Wall clock time and date at job start Mon Mar 30 2020 06:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 120.00151 * 2 1 4 4 H 1.48501 * 109.47023 * 269.99804 * 3 2 1 5 5 H 1.48500 * 109.47101 * 29.99952 * 3 2 1 6 6 H 1.48499 * 109.47133 * 149.99891 * 3 2 1 7 7 C 1.38751 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00215 * 179.97438 * 7 2 1 9 9 N 1.36811 * 119.99578 * 0.02562 * 7 2 1 10 10 C 1.39351 * 120.00020 * 179.97438 * 9 7 2 11 11 C 1.38929 * 120.12485 * 359.97438 * 10 9 7 12 12 C 1.38127 * 119.98544 * 180.02562 * 11 10 9 13 13 C 1.38380 * 120.23846 * 359.97438 * 12 11 10 14 14 C 1.38213 * 120.24297 * 359.71973 * 13 12 11 15 15 C 1.38728 * 120.01336 * 0.55781 * 14 13 12 16 16 N 1.39769 * 120.11717 * 179.71823 * 15 14 13 17 17 C 1.39670 * 119.99964 * 352.35430 * 16 15 14 18 18 C 1.38943 * 120.08120 * 317.76847 * 17 16 15 19 19 C 1.38088 * 119.92412 * 180.25217 * 18 17 16 20 20 C 1.38298 * 120.07734 * 359.44333 * 19 18 17 21 21 C 1.38290 * 120.15286 * 0.55701 * 20 19 18 22 22 C 1.38101 * 120.08093 * 359.72069 * 21 20 19 23 23 H 0.97005 * 119.99899 * 359.97438 * 1 2 3 24 24 H 0.97012 * 120.00030 * 359.97438 * 9 7 2 25 25 H 1.08003 * 120.00885 * 359.97438 * 11 10 9 26 26 H 1.08004 * 119.88091 * 179.97438 * 12 11 10 27 27 H 1.08000 * 119.87550 * 180.02562 * 13 12 11 28 28 H 1.08004 * 119.99173 * 180.29974 * 14 13 12 29 29 H 0.96997 * 120.00119 * 172.35378 * 16 15 14 30 30 H 1.08006 * 120.03075 * 359.97395 * 18 17 16 31 31 H 1.08005 * 119.95791 * 179.69371 * 19 18 17 32 32 H 1.07996 * 119.92140 * 180.25096 * 20 19 18 33 33 H 1.08002 * 119.96409 * 179.74336 * 21 20 19 34 34 H 1.07996 * 120.03891 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0101 -1.2016 0.0005 8 1 3.0901 -1.2016 0.0001 9 7 1.3260 -2.3864 0.0005 10 6 2.0227 -3.5932 0.0005 11 6 3.4120 -3.5963 0.0000 12 6 4.0997 -4.7942 -0.0005 13 6 3.4098 -5.9938 0.0000 14 6 2.0277 -6.0020 0.0069 15 6 1.3267 -4.8049 0.0017 16 7 -0.0710 -4.8107 0.0027 17 6 -0.7645 -6.0132 -0.1520 18 6 -0.3385 -6.9473 -1.0882 19 6 -1.0296 -8.1329 -1.2420 20 6 -2.1378 -8.3960 -0.4575 21 6 -2.5646 -7.4685 0.4753 22 6 -1.8816 -6.2783 0.6305 23 1 -0.4850 0.8401 0.0004 24 1 0.3559 -2.3864 0.0005 25 1 3.9542 -2.6622 -0.0008 26 1 5.1797 -4.7946 -0.0014 27 1 3.9534 -6.9270 0.0000 28 1 1.4934 -6.9406 0.0122 29 1 -0.5594 -3.9797 0.1108 30 1 0.5295 -6.7444 -1.6980 31 1 -0.7019 -8.8573 -1.9730 32 1 -2.6740 -9.3258 -0.5772 33 1 -3.4328 -7.6754 1.0834 34 1 -2.2157 -5.5543 1.3589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006399825.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:54 Heat of formation + Delta-G solvation = 64.477036 kcal Electronic energy + Delta-G solvation = -17603.336546 eV Core-core repulsion = 14886.849428 eV Total energy + Delta-G solvation = -2716.487118 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.69479 -38.17789 -35.09408 -34.69228 -31.89859 -30.79231 -29.66455 -28.44557 -27.13138 -24.74538 -22.48707 -22.35290 -20.70634 -20.50721 -17.96302 -17.14299 -16.90100 -15.89785 -15.53038 -14.63354 -14.48378 -14.33148 -13.62630 -13.39982 -13.28348 -13.18532 -12.85086 -12.53779 -12.18035 -11.65021 -11.41141 -11.30556 -11.01996 -10.72081 -10.65510 -10.42034 -10.30749 -10.02847 -9.84063 -8.74598 -8.68673 -8.33079 -7.22713 -6.55814 -6.27390 -3.71042 1.59532 1.62408 2.50074 2.60411 3.15818 3.16774 3.19659 3.85569 4.04161 4.07583 4.71838 5.13666 5.15645 5.20752 5.22122 5.36751 5.64484 5.74918 5.81345 5.90051 5.95027 6.21114 6.26670 6.43721 6.59103 6.66761 6.73002 6.76543 6.94349 7.06301 7.15592 7.26127 7.34155 7.62105 7.74069 7.84005 8.17026 8.26627 8.75156 9.33564 9.51076 10.61835 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.024140 B = 0.005731 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.634871 B = 4884.244094 C = 5879.264914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.016 3.984 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.294 4.294 8 H 0.102 0.898 9 N -0.572 5.572 10 C 0.181 3.819 11 C -0.205 4.205 12 C -0.092 4.092 13 C -0.210 4.210 14 C -0.125 4.125 15 C 0.068 3.932 16 N -0.687 5.687 17 C 0.197 3.803 18 C -0.159 4.159 19 C -0.095 4.095 20 C -0.164 4.164 21 C -0.093 4.093 22 C -0.169 4.169 23 H 0.273 0.727 24 H 0.393 0.607 25 H 0.117 0.883 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.403 0.597 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 -11.104 -0.430 11.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.186 4.186 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.423 4.423 8 H 0.119 0.881 9 N -0.178 5.178 10 C 0.062 3.938 11 C -0.231 4.231 12 C -0.112 4.112 13 C -0.233 4.233 14 C -0.148 4.148 15 C -0.032 4.032 16 N -0.311 5.311 17 C 0.098 3.902 18 C -0.180 4.180 19 C -0.114 4.114 20 C -0.184 4.184 21 C -0.112 4.112 22 C -0.190 4.190 23 H 0.083 0.917 24 H 0.228 0.772 25 H 0.135 0.865 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.131 0.869 29 H 0.240 0.760 30 H 0.146 0.854 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.826 -10.659 -0.432 10.823 hybrid contribution -0.281 1.270 0.057 1.302 sum -2.107 -9.389 -0.375 9.630 Atomic orbital electron populations 1.69676 1.05913 1.28343 1.49901 1.25236 0.95752 0.99740 0.97900 0.85828 0.79085 0.80831 0.78447 1.20358 1.20817 1.19408 1.19666 0.92984 0.82613 1.47067 0.88061 1.40722 1.07462 1.01782 1.67791 1.17535 0.91822 0.84518 0.99921 1.20242 0.91654 0.97802 1.13420 1.20557 0.97994 0.92319 1.00297 1.20172 0.93152 0.96731 1.13257 1.20440 0.94201 0.95125 1.05038 1.17083 0.81484 0.93046 1.11590 1.41811 1.03487 1.06572 1.79256 1.17696 0.92193 0.87435 0.92905 1.21191 1.02632 0.95607 0.98564 1.20930 0.95137 0.96509 0.98835 1.20931 0.98565 0.99885 0.99001 1.20868 0.98961 0.93430 0.97957 1.21019 0.99001 0.98551 1.00478 0.91696 0.77226 0.86497 0.88107 0.88234 0.86899 0.76037 0.85363 0.86365 0.86728 0.86444 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.04 13.05 55.49 0.72 -23.32 16 2 C 0.02 0.40 5.50 -17.45 -0.10 0.31 16 3 Si 0.93 20.01 29.55 -169.99 -5.02 14.98 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.29 -7.54 9.55 -15.14 -0.14 -7.69 16 8 H 0.10 2.51 5.68 -52.49 -0.30 2.21 16 9 N -0.57 -13.99 5.42 -9.49 -0.05 -14.04 16 10 C 0.18 4.11 6.64 -83.62 -0.56 3.55 16 11 C -0.21 -4.41 9.30 -39.37 -0.37 -4.78 16 12 C -0.09 -1.74 10.03 -39.57 -0.40 -2.13 16 13 C -0.21 -3.85 10.04 -39.54 -0.40 -4.25 16 14 C -0.13 -2.38 8.05 -39.41 -0.32 -2.70 16 15 C 0.07 1.40 6.45 -83.50 -0.54 0.86 16 16 N -0.69 -12.85 5.45 -8.25 -0.04 -12.89 16 17 C 0.20 3.29 5.85 -83.76 -0.49 2.80 16 18 C -0.16 -2.46 7.38 -39.38 -0.29 -2.75 16 19 C -0.10 -1.24 10.04 -39.61 -0.40 -1.64 16 20 C -0.16 -2.01 10.04 -39.54 -0.40 -2.41 16 21 C -0.09 -1.19 10.04 -39.61 -0.40 -1.59 16 22 C -0.17 -2.51 9.97 -39.37 -0.39 -2.90 16 23 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 24 H 0.39 9.65 6.09 -40.81 -0.25 9.40 16 25 H 0.12 2.52 5.96 -52.48 -0.31 2.20 16 26 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 27 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 28 H 0.11 1.98 5.39 -52.48 -0.28 1.70 16 29 H 0.40 7.63 7.05 -40.82 -0.29 7.35 16 30 H 0.13 2.06 6.71 -52.48 -0.35 1.71 16 31 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 287.23 15.07 4.33 4.33 Total: -1.00 -26.91 287.23 -8.70 -35.61 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -3.45 Total: 20.65 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -5.18 Total: -25.32 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.63 Total: -50.25 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.91 -8.70 -35.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006399825.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.087 kcal (2) G-P(sol) polarization free energy of solvation -26.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds