Wall clock time and date at job start Mon Mar 30 2020 06:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 120.00151 * 2 1 4 4 H 1.48501 * 109.47023 * 269.99804 * 3 2 1 5 5 H 1.48500 * 109.47101 * 29.99952 * 3 2 1 6 6 H 1.48499 * 109.47133 * 149.99891 * 3 2 1 7 7 C 1.38751 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00215 * 179.97438 * 7 2 1 9 9 N 1.36811 * 119.99578 * 0.02562 * 7 2 1 10 10 C 1.39351 * 120.00020 * 179.97438 * 9 7 2 11 11 C 1.38929 * 120.12485 * 359.97438 * 10 9 7 12 12 C 1.38127 * 119.98544 * 180.02562 * 11 10 9 13 13 C 1.38380 * 120.23846 * 359.97438 * 12 11 10 14 14 C 1.38213 * 120.24297 * 359.71973 * 13 12 11 15 15 C 1.38728 * 120.01336 * 0.55781 * 14 13 12 16 16 N 1.39769 * 120.11717 * 179.71823 * 15 14 13 17 17 C 1.39670 * 119.99964 * 352.35430 * 16 15 14 18 18 C 1.38943 * 120.08120 * 317.76847 * 17 16 15 19 19 C 1.38088 * 119.92412 * 180.25217 * 18 17 16 20 20 C 1.38298 * 120.07734 * 359.44333 * 19 18 17 21 21 C 1.38290 * 120.15286 * 0.55701 * 20 19 18 22 22 C 1.38101 * 120.08093 * 359.72069 * 21 20 19 23 23 H 0.97005 * 119.99899 * 359.97438 * 1 2 3 24 24 H 0.97012 * 120.00030 * 359.97438 * 9 7 2 25 25 H 1.08003 * 120.00885 * 359.97438 * 11 10 9 26 26 H 1.08004 * 119.88091 * 179.97438 * 12 11 10 27 27 H 1.08000 * 119.87550 * 180.02562 * 13 12 11 28 28 H 1.08004 * 119.99173 * 180.29974 * 14 13 12 29 29 H 0.96997 * 120.00119 * 172.35378 * 16 15 14 30 30 H 1.08006 * 120.03075 * 359.97395 * 18 17 16 31 31 H 1.08005 * 119.95791 * 179.69371 * 19 18 17 32 32 H 1.07996 * 119.92140 * 180.25096 * 20 19 18 33 33 H 1.08002 * 119.96409 * 179.74336 * 21 20 19 34 34 H 1.07996 * 120.03891 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0101 -1.2016 0.0005 8 1 3.0901 -1.2016 0.0001 9 7 1.3260 -2.3864 0.0005 10 6 2.0227 -3.5932 0.0005 11 6 3.4120 -3.5963 0.0000 12 6 4.0997 -4.7942 -0.0005 13 6 3.4098 -5.9938 0.0000 14 6 2.0277 -6.0020 0.0069 15 6 1.3267 -4.8049 0.0017 16 7 -0.0710 -4.8107 0.0027 17 6 -0.7645 -6.0132 -0.1520 18 6 -0.3385 -6.9473 -1.0882 19 6 -1.0296 -8.1329 -1.2420 20 6 -2.1378 -8.3960 -0.4575 21 6 -2.5646 -7.4685 0.4753 22 6 -1.8816 -6.2783 0.6305 23 1 -0.4850 0.8401 0.0004 24 1 0.3559 -2.3864 0.0005 25 1 3.9542 -2.6622 -0.0008 26 1 5.1797 -4.7946 -0.0014 27 1 3.9534 -6.9270 0.0000 28 1 1.4934 -6.9406 0.0122 29 1 -0.5594 -3.9797 0.1108 30 1 0.5295 -6.7444 -1.6980 31 1 -0.7019 -8.8573 -1.9730 32 1 -2.6740 -9.3258 -0.5772 33 1 -3.4328 -7.6754 1.0834 34 1 -2.2157 -5.5543 1.3589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006399825.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:54 Heat of formation + Delta-G solvation = 50.856505 kcal Electronic energy + Delta-G solvation = -17603.927176 eV Core-core repulsion = 14886.849428 eV Total energy + Delta-G solvation = -2717.077748 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.06709 -39.55345 -36.76482 -36.08419 -33.68958 -31.91967 -30.98556 -30.02486 -28.61104 -26.55070 -23.76454 -23.60658 -22.19204 -21.93945 -19.70462 -18.57844 -18.33617 -17.28177 -16.88830 -16.29857 -15.87006 -15.71872 -14.99456 -14.89084 -14.75786 -14.46117 -14.32948 -14.03727 -13.53998 -13.36700 -13.00331 -12.60368 -12.29093 -12.26003 -12.15246 -12.02285 -11.94239 -11.54480 -11.34900 -10.55389 -9.78410 -9.63781 -8.81469 -8.42846 -7.86041 -5.63095 0.41024 0.53309 0.90090 1.07629 1.40719 1.47778 1.52738 2.28164 2.48118 2.91375 3.00643 3.45144 3.49853 4.08031 4.14843 4.20026 4.37226 4.45210 4.61468 4.64784 4.72092 4.84908 4.86563 5.09957 5.19111 5.30002 5.38013 5.51232 5.51881 5.62772 5.70212 5.71836 5.92551 6.06493 6.07226 6.33598 6.69617 6.76054 6.87411 7.56734 7.67687 8.76618 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.024140 B = 0.005731 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.634871 B = 4884.244094 C = 5879.264914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.038 4.038 3 Si 0.995 3.005 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.306 4.306 8 H 0.102 0.898 9 N -0.599 5.599 10 C 0.152 3.848 11 C -0.218 4.218 12 C -0.098 4.098 13 C -0.189 4.189 14 C -0.133 4.133 15 C 0.071 3.929 16 N -0.694 5.694 17 C 0.165 3.835 18 C -0.171 4.171 19 C -0.093 4.093 20 C -0.153 4.153 21 C -0.092 4.092 22 C -0.180 4.180 23 H 0.271 0.729 24 H 0.386 0.614 25 H 0.109 0.891 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.130 0.870 29 H 0.396 0.604 30 H 0.117 0.883 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.387 -14.119 -0.531 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.235 4.235 3 Si 0.820 3.180 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.436 4.436 8 H 0.119 0.881 9 N -0.209 5.209 10 C 0.037 3.963 11 C -0.244 4.244 12 C -0.118 4.118 13 C -0.211 4.211 14 C -0.156 4.156 15 C -0.030 4.030 16 N -0.319 5.319 17 C 0.068 3.932 18 C -0.192 4.192 19 C -0.112 4.112 20 C -0.172 4.172 21 C -0.111 4.111 22 C -0.201 4.201 23 H 0.080 0.920 24 H 0.219 0.781 25 H 0.126 0.874 26 H 0.151 0.849 27 H 0.154 0.846 28 H 0.148 0.852 29 H 0.231 0.769 30 H 0.135 0.865 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.165 0.835 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.400 -13.769 -0.536 13.851 hybrid contribution -0.411 1.780 0.077 1.828 sum -1.811 -11.990 -0.459 12.134 Atomic orbital electron populations 1.69794 1.07179 1.28632 1.52517 1.26053 0.96549 1.02623 0.98237 0.84857 0.77996 0.76868 0.78316 1.20138 1.20862 1.18567 1.19917 0.93185 0.83582 1.46929 0.88073 1.40624 1.06971 1.02013 1.71249 1.17972 0.92637 0.84885 1.00758 1.20454 0.91477 0.98804 1.13631 1.20890 0.99688 0.91447 0.99789 1.20680 0.92995 0.97978 1.09472 1.20740 0.94803 0.95165 1.04877 1.17362 0.82621 0.92951 1.10031 1.41851 1.02912 1.07268 1.79821 1.17992 0.93401 0.87182 0.94623 1.21219 1.02945 0.96524 0.98550 1.21284 0.94865 0.95867 0.99168 1.21394 0.97757 1.00720 0.97361 1.21254 0.99332 0.92352 0.98137 1.21192 0.98756 0.99688 1.00487 0.92036 0.78083 0.87351 0.84927 0.84616 0.85217 0.76879 0.86508 0.83542 0.83200 0.83545 0.86359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.82 13.05 21.64 0.28 -52.54 16 2 C -0.04 -2.00 5.50 84.85 0.47 -1.54 16 3 Si 1.00 42.44 29.55 68.60 2.03 44.47 16 4 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.31 -16.49 9.55 84.04 0.80 -15.69 16 8 H 0.10 5.24 5.68 -2.91 -0.02 5.22 16 9 N -0.60 -30.97 5.42 -183.92 -1.00 -31.97 16 10 C 0.15 7.13 6.64 38.48 0.26 7.39 16 11 C -0.22 -9.45 9.30 22.41 0.21 -9.24 16 12 C -0.10 -3.53 10.03 22.28 0.22 -3.31 16 13 C -0.19 -6.37 10.04 22.30 0.22 -6.14 16 14 C -0.13 -4.86 8.05 22.38 0.18 -4.68 16 15 C 0.07 2.97 6.45 38.36 0.25 3.22 16 16 N -0.69 -26.89 5.45 -180.01 -0.98 -27.87 16 17 C 0.17 5.48 5.85 38.23 0.22 5.71 16 18 C -0.17 -5.07 7.38 22.40 0.17 -4.90 16 19 C -0.09 -2.13 10.04 22.25 0.22 -1.90 16 20 C -0.15 -3.11 10.04 22.30 0.22 -2.89 16 21 C -0.09 -2.08 10.04 22.25 0.22 -1.85 16 22 C -0.18 -5.19 9.97 22.41 0.22 -4.97 16 23 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 24 H 0.39 20.35 6.09 -92.70 -0.56 19.79 16 25 H 0.11 4.80 5.96 -2.91 -0.02 4.78 16 26 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 27 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 28 H 0.13 4.29 5.39 -2.91 -0.02 4.27 16 29 H 0.40 16.10 7.05 -92.71 -0.65 15.44 16 30 H 0.12 3.66 6.71 -2.91 -0.02 3.64 16 31 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.12 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -60.31 287.23 4.15 -56.16 By element: Atomic # 1 Polarization: 52.62 SS G_CDS: -0.08 Total: 52.55 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 3.89 Total: -40.79 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -1.70 Total: -112.38 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -60.31 4.15 -56.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006399825.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.017 kcal (2) G-P(sol) polarization free energy of solvation -60.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds