Wall clock time and date at job start Mon Mar 30 2020 06:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48504 * 109.46829 * 270.00169 * 3 2 1 5 5 H 1.48498 * 109.47356 * 29.99999 * 3 2 1 6 6 H 1.48493 * 109.47128 * 150.00225 * 3 2 1 7 7 C 1.37872 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00308 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99772 * 0.02562 * 7 2 1 10 10 N 1.46509 * 109.46936 * 179.97438 * 9 7 2 11 11 C 1.39763 * 119.99646 * 269.99814 * 10 9 7 12 12 C 1.38917 * 120.07382 * 5.19574 * 11 10 9 13 13 C 1.38101 * 119.92130 * 179.72336 * 12 11 10 14 14 C 1.38292 * 120.07606 * 0.55535 * 13 12 11 15 15 C 1.38288 * 120.14843 * 359.71798 * 14 13 12 16 16 C 1.38107 * 120.07466 * 0.02562 * 15 14 13 17 17 C 1.39080 * 120.00223 * 89.99574 * 10 9 7 18 18 C 1.39135 * 119.70445 * 84.99125 * 17 10 9 19 19 C 1.38305 * 119.09253 * 180.02562 * 18 17 10 20 20 C 1.38875 * 118.50948 * 0.02562 * 19 18 17 21 21 C 1.38036 * 119.33023 * 0.27908 * 20 19 18 22 22 N 1.31967 * 120.85492 * 359.40219 * 21 20 19 23 23 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47457 * 59.99858 * 9 7 2 25 25 H 1.08997 * 109.47004 * 299.99166 * 9 7 2 26 26 H 1.07991 * 120.03914 * 359.97438 * 12 11 10 27 27 H 1.08002 * 119.96511 * 180.27640 * 13 12 11 28 28 H 1.07997 * 119.93100 * 179.70482 * 14 13 12 29 29 H 1.08000 * 119.96659 * 180.02562 * 15 14 13 30 30 H 1.08000 * 120.03483 * 179.97438 * 16 15 14 31 31 H 1.07993 * 120.45120 * 0.02703 * 18 17 10 32 32 H 1.08004 * 120.74404 * 180.02562 * 19 18 17 33 33 H 1.08008 * 120.33763 * 180.02562 * 20 19 18 34 34 H 1.08000 * 119.57558 * 179.70021 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6570 -4.1439 -1.2099 12 6 2.2921 -3.5496 -2.4113 13 6 2.7472 -4.0736 -3.6053 14 6 3.5559 -5.1955 -3.6063 15 6 3.9164 -5.7929 -2.4123 16 6 3.4691 -5.2709 -1.2145 17 6 2.6550 -4.1413 1.2050 18 6 1.9046 -5.1162 1.8549 19 6 2.3657 -5.6326 3.0522 20 6 3.5660 -5.1548 3.5618 21 6 4.2558 -4.1817 2.8671 22 7 3.7950 -3.7114 1.7235 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 1.6567 -2.6764 -2.4115 27 1 2.4676 -3.6095 -4.5395 28 1 3.9066 -5.6061 -4.5416 29 1 4.5484 -6.6686 -2.4165 30 1 3.7507 -5.7382 -0.2824 31 1 0.9749 -5.4648 1.4302 32 1 1.8048 -6.3905 3.5790 33 1 3.9537 -5.5378 4.4943 34 1 5.1872 -3.8038 3.2622 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019432789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:03 Heat of formation + Delta-G solvation = 60.367416 kcal Electronic energy + Delta-G solvation = -17992.685883 eV Core-core repulsion = 15276.020559 eV Total energy + Delta-G solvation = -2716.665324 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.43370 -39.87994 -37.13772 -34.81800 -33.33831 -32.06783 -31.43286 -30.52442 -28.30159 -25.24294 -24.39506 -24.06490 -22.90389 -21.62548 -18.89705 -18.67862 -17.70177 -17.30893 -16.87044 -16.64233 -16.03944 -15.53755 -15.26567 -14.74709 -14.61141 -14.44077 -14.08225 -13.96413 -13.76825 -13.30270 -13.06212 -12.80156 -12.61080 -12.34929 -12.12254 -11.98692 -11.67332 -10.89160 -10.81469 -10.67339 -10.25963 -9.87136 -9.74710 -8.45777 -8.03838 -6.38507 0.13679 0.41849 0.61719 0.80514 1.33116 1.33622 1.45651 2.21313 2.38214 2.85906 3.02914 3.08925 3.75179 4.01352 4.06883 4.18247 4.22267 4.26596 4.36494 4.43965 4.69361 4.76263 4.80575 4.86675 5.02059 5.05648 5.20366 5.23455 5.25081 5.52231 5.64877 5.67712 5.75941 5.80616 6.02184 6.13728 6.45442 6.77817 6.83204 7.21703 7.32172 8.80588 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.009341 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.198107 B = 2996.746810 C = 4429.904081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.015 3.985 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.534 4.534 8 H 0.043 0.957 9 C 0.279 3.721 10 N -0.581 5.581 11 C 0.209 3.791 12 C -0.205 4.205 13 C -0.080 4.080 14 C -0.181 4.181 15 C -0.076 4.076 16 C -0.205 4.205 17 C 0.347 3.653 18 C -0.182 4.182 19 C -0.062 4.062 20 C -0.167 4.167 21 C 0.092 3.908 22 N -0.528 5.528 23 H 0.268 0.732 24 H 0.024 0.976 25 H 0.004 0.996 26 H 0.103 0.897 27 H 0.138 0.862 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.105 0.895 31 H 0.133 0.867 32 H 0.176 0.824 33 H 0.179 0.821 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.382 -13.495 2.363 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.185 4.185 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.062 0.938 9 C 0.159 3.841 10 N -0.288 5.288 11 C 0.108 3.892 12 C -0.228 4.228 13 C -0.098 4.098 14 C -0.201 4.201 15 C -0.095 4.095 16 C -0.228 4.228 17 C 0.122 3.878 18 C -0.205 4.205 19 C -0.088 4.088 20 C -0.186 4.186 21 C -0.066 4.066 22 N -0.240 5.240 23 H 0.077 0.923 24 H 0.042 0.958 25 H 0.022 0.978 26 H 0.121 0.879 27 H 0.156 0.844 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.123 0.877 31 H 0.151 0.849 32 H 0.193 0.807 33 H 0.197 0.803 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.608 -12.643 2.066 14.414 hybrid contribution -0.443 0.915 0.504 1.134 sum 6.165 -11.728 2.570 13.497 Atomic orbital electron populations 1.70024 1.07123 1.28120 1.51182 1.25719 0.95729 1.02434 0.94573 0.85534 0.78401 0.79011 0.78616 1.19525 1.19922 1.20218 1.21676 0.92964 0.91896 1.50779 0.93844 1.18797 0.86726 0.82740 0.95873 1.44214 1.47119 1.36827 1.00684 1.18162 0.93161 0.92360 0.85537 1.20897 1.06938 1.02685 0.92234 1.21162 0.96065 0.95871 0.96716 1.21180 1.02311 0.97855 0.98766 1.21136 0.97800 0.99339 0.91177 1.20635 1.04777 0.98226 0.99132 1.18343 0.90114 0.91477 0.87896 1.22377 1.01773 0.98101 0.98220 1.21930 0.95626 0.98204 0.93050 1.22539 0.95696 0.98004 1.02410 1.23175 1.00222 0.93888 0.89328 1.67506 1.15230 1.27042 1.14235 0.92306 0.95769 0.97801 0.87876 0.84369 0.83298 0.83462 0.87708 0.84890 0.80694 0.80321 0.80731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.42 13.29 21.45 0.28 -55.14 16 2 C 0.01 0.85 5.46 84.65 0.46 1.32 16 3 Si 0.96 46.26 29.54 68.60 2.03 48.28 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 7 C -0.53 -31.85 9.35 25.60 0.24 -31.62 16 8 H 0.04 2.73 7.81 -2.91 -0.02 2.71 16 9 C 0.28 15.45 4.79 85.63 0.41 15.86 16 10 N -0.58 -27.94 2.68 -517.33 -1.39 -29.32 16 11 C 0.21 9.29 6.52 38.20 0.25 9.54 16 12 C -0.21 -8.91 9.17 22.40 0.21 -8.70 16 13 C -0.08 -2.72 10.04 22.25 0.22 -2.50 16 14 C -0.18 -5.28 10.04 22.29 0.22 -5.06 16 15 C -0.08 -2.31 10.04 22.25 0.22 -2.09 16 16 C -0.20 -7.72 9.31 22.40 0.21 -7.51 16 17 C 0.35 14.79 4.49 133.03 0.60 15.39 16 18 C -0.18 -6.19 10.02 22.50 0.23 -5.96 16 19 C -0.06 -1.50 10.17 22.44 0.23 -1.27 16 20 C -0.17 -3.76 10.10 22.37 0.23 -3.53 16 21 C 0.09 2.77 11.17 84.62 0.95 3.72 16 22 N -0.53 -22.17 10.40 -193.19 -2.01 -24.18 16 23 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 24 H 0.02 1.41 6.43 -2.39 -0.02 1.39 16 25 H 0.00 0.23 8.05 -2.39 -0.02 0.22 16 26 H 0.10 5.06 6.26 -2.91 -0.02 5.04 16 27 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 28 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 29 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.10 3.89 7.00 -2.91 -0.02 3.87 16 31 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 33 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.18 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -72.68 298.16 4.68 -68.01 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.09 Total: 14.76 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 4.67 Total: -22.41 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -3.11 Total: -108.64 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -72.68 4.68 -68.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019432789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.374 kcal (2) G-P(sol) polarization free energy of solvation -72.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds