Wall clock time and date at job start Mon Mar 30 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99750 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 119.99818 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46963 * 90.00024 * 8 6 4 10 10 H 1.48502 * 109.47084 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.47321 * 330.00380 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.50703 * 109.47107 * 293.95458 * 12 2 1 14 14 C 1.38128 * 119.96733 * 104.72657 * 13 12 2 15 15 C 1.38880 * 119.93130 * 179.73057 * 14 13 12 16 16 N 1.39749 * 120.05600 * 180.27232 * 15 14 13 17 17 C 1.38915 * 119.87971 * 0.54005 * 15 14 13 18 18 C 1.38079 * 119.93740 * 359.73115 * 17 15 14 19 19 C 1.38364 * 119.96762 * 284.99579 * 13 12 2 20 20 Cl 1.73598 * 119.93804 * 0.02756 * 19 13 12 21 21 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 22 22 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 23 23 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 24 24 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 25 25 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 26 26 H 0.97008 * 119.99731 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 28 28 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 29 29 H 1.07997 * 120.03516 * 359.97438 * 14 13 12 30 30 H 0.97005 * 119.99521 * 180.26545 * 16 15 14 31 31 H 0.96999 * 120.00231 * 0.27082 * 16 15 14 32 32 H 1.08005 * 120.03168 * 179.71032 * 17 15 14 33 33 H 1.08003 * 119.96676 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 1.7142 3.9391 2.6617 8 14 3.0000 4.2761 0.2308 9 1 2.0634 4.9797 -0.6819 10 1 3.8863 5.2679 0.8912 11 1 3.8240 3.3174 -0.5484 12 6 1.9955 -0.7660 -1.1375 13 6 1.6370 -2.2205 -0.9727 14 6 0.6267 -2.7728 -1.7357 15 6 0.3007 -4.1146 -1.5872 16 7 -0.7171 -4.6775 -2.3619 17 6 0.9845 -4.8948 -0.6633 18 6 1.9897 -4.3359 0.1007 19 6 2.3164 -2.9999 -0.0533 20 17 3.5804 -2.3004 0.9095 21 1 -0.3632 -1.0253 0.0709 22 1 -0.3633 0.5740 0.8524 23 1 -0.3633 0.4511 -0.9233 24 1 3.0797 1.3445 -0.1083 25 1 1.5611 1.9273 -0.8310 26 1 1.9889 4.8553 2.8236 27 1 1.5612 -0.3873 -2.0628 28 1 3.0798 -0.6612 -1.1755 29 1 0.0935 -2.1628 -2.4498 30 1 -0.9467 -5.6139 -2.2547 31 1 -1.1939 -4.1319 -3.0068 32 1 0.7298 -5.9374 -0.5425 33 1 2.5213 -4.9420 0.8195 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036964799.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:35 Heat of formation + Delta-G solvation = 23.912519 kcal Electronic energy + Delta-G solvation = -16414.644525 eV Core-core repulsion = 13693.965548 eV Total energy + Delta-G solvation = -2720.678977 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.53194 -36.70058 -35.95257 -34.14101 -32.54665 -31.27837 -28.52661 -27.73817 -26.54694 -23.74840 -22.36664 -21.11231 -19.97237 -17.05078 -16.99599 -16.55021 -16.02753 -14.85645 -14.80097 -14.30689 -13.83878 -13.77772 -13.27248 -13.21681 -12.51070 -12.20876 -12.00348 -11.78992 -11.51637 -11.25639 -11.15405 -10.87880 -10.64318 -10.32041 -10.03477 -9.92810 -9.77442 -9.22717 -8.75587 -8.51864 -7.42576 -7.29429 -5.99340 -3.95714 1.42041 1.56005 2.76064 3.31692 3.39490 3.42075 3.74659 3.83077 4.47028 4.81162 4.93980 5.07672 5.28575 5.33796 5.51509 5.60544 5.82548 5.95226 6.11153 6.19838 6.24969 6.26128 6.32195 6.63233 6.75940 6.80015 6.90339 7.05710 7.36923 7.62240 7.66182 7.95854 8.11014 8.72342 9.10612 9.62668 11.13952 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.030249 B = 0.005812 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.422775 B = 4816.476008 C = 5250.350326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.515 5.515 3 C 0.163 3.837 4 C -0.503 4.503 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.902 5.902 8 Si 0.873 3.127 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.085 3.915 13 C -0.010 4.010 14 C -0.182 4.182 15 C 0.212 3.788 16 N -0.880 5.880 17 C -0.194 4.194 18 C -0.068 4.068 19 C -0.067 4.067 20 Cl -0.059 7.059 21 H 0.048 0.952 22 H 0.079 0.921 23 H 0.009 0.991 24 H 0.029 0.971 25 H -0.018 1.018 26 H 0.263 0.737 27 H 0.032 0.968 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.396 0.604 31 H 0.397 0.603 32 H 0.123 0.877 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 -17.582 -10.414 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.239 5.239 3 C 0.037 3.963 4 C -0.542 4.542 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.541 5.541 8 Si 0.701 3.299 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.191 1.191 12 C -0.043 4.043 13 C -0.012 4.012 14 C -0.206 4.206 15 C 0.108 3.892 16 N -0.419 5.419 17 C -0.217 4.217 18 C -0.087 4.087 19 C -0.096 4.096 20 Cl -0.030 7.030 21 H 0.067 0.933 22 H 0.098 0.902 23 H 0.027 0.973 24 H 0.047 0.953 25 H 0.000 1.000 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.141 0.859 30 H 0.224 0.776 31 H 0.225 0.775 32 H 0.140 0.860 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.709 -17.528 -9.765 20.137 hybrid contribution -0.016 0.906 -1.488 1.742 sum -1.725 -16.622 -11.253 20.147 Atomic orbital electron populations 1.22269 0.88324 1.00021 1.00560 1.61947 1.07220 1.16055 1.38630 1.20196 0.95263 0.83833 0.96989 1.21025 1.35263 0.97015 1.00865 0.90057 1.24881 0.95813 0.97365 0.95276 1.69897 1.47110 1.13193 1.23907 0.86891 0.80692 0.80084 0.82254 1.20453 1.21207 1.19146 1.21111 1.00920 0.88952 0.93324 1.19547 0.93105 0.95660 0.92917 1.20407 1.01639 0.93516 1.05027 1.17739 0.88567 0.92058 0.90789 1.42430 1.40299 1.13873 1.45333 1.20404 1.00748 0.99747 1.00833 1.20749 0.96497 0.93105 0.98375 1.20506 0.97211 0.93255 0.98606 1.98375 1.49934 1.84558 1.70139 0.93318 0.90197 0.97285 0.95311 1.00005 0.92760 0.94968 0.89865 0.85923 0.77602 0.77492 0.85951 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.15 60.07 0.55 1.28 16 2 N -0.52 -11.01 4.64 -245.82 -1.14 -12.15 16 3 C 0.16 4.03 3.79 -4.98 -0.02 4.01 16 4 C -0.50 -14.50 9.01 -34.44 -0.31 -14.81 16 5 H 0.08 2.56 7.37 -52.48 -0.39 2.17 16 6 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 8 Si 0.87 21.81 27.47 -169.99 -4.67 17.14 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 12 C 0.09 1.52 4.42 -4.98 -0.02 1.50 16 13 C -0.01 -0.16 4.43 -104.61 -0.46 -0.63 16 14 C -0.18 -2.44 8.95 -39.38 -0.35 -2.79 16 15 C 0.21 2.45 6.76 -83.76 -0.57 1.88 16 16 N -0.88 -6.99 9.09 32.42 0.29 -6.69 16 17 C -0.19 -2.22 9.90 -39.39 -0.39 -2.61 16 18 C -0.07 -0.89 9.82 -39.58 -0.39 -1.27 16 19 C -0.07 -1.05 6.31 -39.48 -0.25 -1.30 16 20 Cl -0.06 -1.01 27.53 -51.86 -1.43 -2.44 16 21 H 0.05 0.88 6.87 -51.93 -0.36 0.52 16 22 H 0.08 1.76 6.76 -51.93 -0.35 1.41 16 23 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 24 H 0.03 0.72 6.99 -51.93 -0.36 0.36 16 25 H -0.02 -0.43 7.55 -51.93 -0.39 -0.83 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 27 H 0.03 0.54 7.93 -51.93 -0.41 0.13 16 28 H 0.08 1.51 7.37 -51.93 -0.38 1.12 16 29 H 0.12 1.49 8.00 -52.49 -0.42 1.07 16 30 H 0.40 2.32 8.84 -40.82 -0.36 1.95 16 31 H 0.40 2.60 8.84 -40.82 -0.36 2.24 16 32 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 33 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 290.54 15.07 4.38 4.38 Total: -1.00 -31.82 290.54 -8.32 -40.14 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.22 Total: -0.32 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -2.31 Total: -12.85 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.07 Total: -46.05 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.43 Total: -2.44 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.82 -8.32 -40.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036964799.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.050 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds