Wall clock time and date at job start Mon Mar 30 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00013 * 2 1 4 4 C 1.50700 * 109.47005 * 293.95449 * 3 2 1 5 5 H 1.07994 * 120.00445 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99590 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00185 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99703 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46730 * 90.00160 * 8 6 4 10 10 H 1.48501 * 109.46833 * 210.00185 * 8 6 4 11 11 H 1.48501 * 109.47187 * 330.00278 * 8 6 4 12 12 C 1.46901 * 111.00014 * 123.95842 * 2 1 3 13 13 C 1.50693 * 109.47370 * 66.04400 * 12 2 1 14 14 C 1.38296 * 119.95020 * 270.29640 * 13 12 2 15 15 C 1.38275 * 120.15514 * 180.25431 * 14 13 12 16 16 C 1.38216 * 120.05817 * 359.44562 * 15 14 13 17 17 Cl 1.73598 * 120.04503 * 180.29740 * 16 15 14 18 18 C 1.38987 * 119.90716 * 0.27971 * 16 15 14 19 19 N 1.39753 * 120.07631 * 179.97438 * 18 16 15 20 20 C 1.38115 * 119.95470 * 89.99768 * 13 12 2 21 21 H 1.09007 * 109.47201 * 296.04749 * 1 2 3 22 22 H 1.09000 * 109.47287 * 56.03868 * 1 2 3 23 23 H 1.08999 * 109.47621 * 176.04901 * 1 2 3 24 24 H 1.09000 * 109.47228 * 53.95412 * 3 2 1 25 25 H 1.09001 * 109.46740 * 173.95828 * 3 2 1 26 26 H 0.97000 * 120.00123 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.46700 * 306.04168 * 12 2 1 28 28 H 1.09000 * 109.46683 * 186.04194 * 12 2 1 29 29 H 1.07996 * 119.92391 * 0.02562 * 14 13 12 30 30 H 1.08002 * 119.97295 * 179.72704 * 15 14 13 31 31 H 0.96992 * 120.00015 * 359.97438 * 19 18 16 32 32 H 0.96994 * 119.99575 * 180.02562 * 19 18 16 33 33 H 1.07999 * 120.03410 * 0.04311 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5116 -2.0485 6 6 2.0268 3.3495 -1.5284 7 7 2.7119 4.0019 -0.6149 8 14 1.5817 4.1873 -3.1377 9 1 0.2693 4.8674 -2.9951 10 1 2.6238 5.1888 -3.4790 11 1 1.4984 3.1718 -4.2179 12 6 1.9954 -0.7661 1.1375 13 6 1.6369 -2.2204 0.9728 14 6 0.4475 -2.7011 1.4892 15 6 0.1167 -4.0360 1.3451 16 6 0.9694 -4.8919 0.6738 17 17 0.5502 -6.5660 0.4863 18 6 2.1628 -4.4103 0.1488 19 7 3.0279 -5.2728 -0.5301 20 6 2.4938 -3.0701 0.3009 21 1 -0.3634 0.4513 0.9233 22 1 -0.3634 0.5741 -0.8523 23 1 -0.3634 -1.0252 -0.0708 24 1 1.5611 1.9273 0.8309 25 1 3.0797 1.3443 0.1082 26 1 2.9865 4.9180 -0.7769 27 1 1.5611 -0.3873 2.0627 28 1 3.0797 -0.6612 1.1755 29 1 -0.2229 -2.0332 2.0096 30 1 -0.8109 -4.4091 1.7534 31 1 2.7959 -6.2087 -0.6350 32 1 3.8606 -4.9355 -0.8957 33 1 3.4205 -2.6928 -0.1057 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037402467.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:40 Heat of formation + Delta-G solvation = -3.350994 kcal Electronic energy + Delta-G solvation = -16106.864313 eV Core-core repulsion = 13385.003102 eV Total energy + Delta-G solvation = -2721.861212 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62629 -38.31096 -37.19938 -35.52824 -34.57934 -32.27922 -29.85744 -28.92788 -28.00611 -25.62308 -23.50743 -22.70610 -21.58060 -18.55790 -17.96490 -17.89652 -17.00409 -16.76800 -16.11519 -15.85524 -15.27003 -15.02231 -14.61918 -14.60887 -14.16894 -13.76122 -13.32073 -13.00996 -12.79821 -12.70786 -12.59028 -12.42451 -12.26821 -12.17433 -11.75983 -11.72790 -11.49171 -11.25172 -10.60442 -9.62492 -9.00206 -8.45576 -8.18865 -6.28790 0.28722 0.60318 1.25972 1.42554 1.43588 1.55394 2.41581 2.73608 2.92279 3.13744 3.54409 3.82117 3.97203 4.29241 4.41755 4.47978 4.57296 4.71462 4.74648 4.83413 4.99221 5.11311 5.14213 5.21845 5.30053 5.37795 5.66131 5.74083 5.85300 6.06312 6.34008 6.46402 6.62900 6.87277 6.90881 7.40812 8.91982 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.039277 B = 0.004163 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.717006 B = 6723.953439 C = 6836.355412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.968 3.032 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.089 3.911 13 C -0.021 4.021 14 C -0.167 4.167 15 C -0.061 4.061 16 C -0.131 4.131 17 Cl -0.072 7.072 18 C 0.226 3.774 19 N -0.864 5.864 20 C -0.178 4.178 21 H 0.014 0.986 22 H 0.054 0.946 23 H 0.077 0.923 24 H -0.035 1.035 25 H 0.006 0.994 26 H 0.264 0.736 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.133 0.867 30 H 0.150 0.850 31 H 0.405 0.595 32 H 0.410 0.590 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.824 -19.288 3.056 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.265 5.265 3 C 0.080 3.920 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.195 4.195 7 N -0.575 5.575 8 Si 0.792 3.208 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.039 4.039 13 C -0.022 4.022 14 C -0.187 4.187 15 C -0.080 4.080 16 C -0.162 4.162 17 Cl -0.043 7.043 18 C 0.118 3.882 19 N -0.405 5.405 20 C -0.202 4.202 21 H 0.033 0.967 22 H 0.073 0.927 23 H 0.095 0.905 24 H -0.017 1.017 25 H 0.025 0.975 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.150 0.850 30 H 0.168 0.832 31 H 0.235 0.765 32 H 0.240 0.760 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.619 -19.487 2.647 19.840 hybrid contribution 0.007 0.915 -0.050 0.917 sum -2.612 -18.572 2.597 18.933 Atomic orbital electron populations 1.22261 0.87588 1.01276 0.99742 1.62042 1.08327 1.15053 1.41062 1.19420 0.93837 0.83607 0.95095 1.21461 1.34810 0.97474 1.02385 0.92017 1.25882 0.95000 0.98011 1.00606 1.70077 1.39353 1.11883 1.36184 0.85404 0.77970 0.78102 0.79276 1.19809 1.20712 1.19027 1.21068 1.00199 0.90303 0.92288 1.19612 0.94050 0.93964 0.94591 1.20888 0.97411 0.95381 1.05056 1.20950 0.98825 0.92134 0.96075 1.20414 0.97910 0.86414 1.11506 1.98312 1.93068 1.16078 1.96862 1.17472 0.89145 0.90128 0.91433 1.42505 1.23757 1.11367 1.62854 1.20474 1.02690 0.91095 1.05902 0.96727 0.92675 0.90469 1.01740 0.97541 0.92674 0.94347 0.90913 0.84959 0.83235 0.76470 0.76025 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 8.94 127.69 1.14 2.68 16 2 N -0.54 -23.49 4.74 -931.66 -4.42 -27.91 16 3 C 0.21 11.03 4.72 85.56 0.40 11.43 16 4 C -0.52 -29.76 8.46 25.60 0.22 -29.55 16 5 H 0.06 3.46 7.12 -2.91 -0.02 3.44 16 6 C 0.00 0.17 5.46 84.66 0.46 0.63 16 7 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 8 Si 0.97 44.29 29.54 68.60 2.03 46.31 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 C 0.09 3.19 5.12 85.55 0.44 3.62 16 13 C -0.02 -0.62 4.89 -19.88 -0.10 -0.72 16 14 C -0.17 -4.35 7.94 22.29 0.18 -4.18 16 15 C -0.06 -1.40 9.82 22.27 0.22 -1.19 16 16 C -0.13 -3.09 6.34 22.44 0.14 -2.95 16 17 Cl -0.07 -1.43 27.60 -2.72 -0.08 -1.50 16 18 C 0.23 5.49 6.75 38.21 0.26 5.75 16 19 N -0.86 -15.86 9.05 -51.29 -0.46 -16.32 16 20 C -0.18 -4.99 9.55 22.39 0.21 -4.78 16 21 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 22 H 0.05 2.33 6.76 -2.39 -0.02 2.31 16 23 H 0.08 2.59 6.15 -2.39 -0.01 2.57 16 24 H -0.04 -2.02 8.12 -2.39 -0.02 -2.04 16 25 H 0.01 0.37 7.93 -2.39 -0.02 0.35 16 26 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 27 H 0.04 1.34 8.07 -2.39 -0.02 1.32 16 28 H 0.07 2.62 7.87 -2.39 -0.02 2.61 16 29 H 0.13 3.19 8.01 -2.91 -0.02 3.16 16 30 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 31 H 0.40 6.40 7.50 -92.71 -0.70 5.70 16 32 H 0.41 6.17 8.84 -92.71 -0.82 5.35 16 33 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -63.67 292.46 0.54 -63.12 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -0.38 Total: 11.40 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 3.57 Total: -19.23 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -4.60 Total: -100.11 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.50 kcal Total: -63.67 0.54 -63.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037402467.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.774 kcal (2) G-P(sol) polarization free energy of solvation -63.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds