Wall clock time and date at job start Mon Mar 30 2020 06:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35889 * 116.99652 * 2 1 4 4 C 1.40171 * 119.88893 * 0.02562 * 3 2 1 5 5 C 1.36367 * 122.25551 * 179.97438 * 4 3 2 6 6 C 1.41029 * 118.96235 * 359.86951 * 5 4 3 7 7 C 1.40452 * 124.38708 * 180.02562 * 6 5 4 8 8 C 1.36493 * 118.83721 * 180.17041 * 7 6 5 9 9 C 1.39685 * 122.32819 * 0.02984 * 8 7 6 10 10 C 1.36124 * 120.34037 * 359.95033 * 9 8 7 11 11 C 1.39161 * 117.98042 * 0.03976 * 10 9 8 12 12 C 1.36602 * 119.88337 * 180.02562 * 3 2 1 13 13 C 1.50926 * 134.61764 * 0.04495 * 12 3 2 14 14 H 1.08997 * 110.27586 * 60.95603 * 13 12 3 15 15 C 1.50697 * 110.27876 * 298.95953 * 13 12 3 16 16 H 1.08004 * 120.00018 * 358.12711 * 15 13 12 17 17 C 1.37879 * 120.00135 * 178.12256 * 15 13 12 18 18 N 1.31512 * 119.99814 * 353.53940 * 17 15 13 19 19 Si 1.86796 * 120.00003 * 173.53578 * 17 15 13 20 20 H 1.48503 * 109.47286 * 265.14651 * 19 17 15 21 21 H 1.48503 * 109.46853 * 145.14856 * 19 17 15 22 22 H 1.48500 * 109.47311 * 25.15160 * 19 17 15 23 23 C 1.50933 * 134.62093 * 180.02562 * 10 9 8 24 24 H 1.09001 * 109.47432 * 299.99867 * 1 2 3 25 25 H 1.08998 * 109.47563 * 60.00079 * 1 2 3 26 26 H 1.09008 * 109.46976 * 180.02562 * 1 2 3 27 27 H 1.07995 * 118.87025 * 359.97438 * 4 3 2 28 28 H 1.08009 * 120.54557 * 179.97438 * 5 4 3 29 29 H 1.08004 * 120.57899 * 0.14700 * 7 6 5 30 30 H 1.07998 * 118.83437 * 180.02562 * 8 7 6 31 31 H 1.07998 * 119.83108 * 179.97438 * 9 8 7 32 32 H 0.97001 * 119.99864 * 179.97438 * 18 17 15 33 33 H 1.09000 * 110.28029 * 61.06453 * 23 10 9 34 34 H 1.08994 * 110.28271 * 298.97287 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 1.2800 2.3849 0.0005 5 6 1.8484 3.6245 0.0011 6 6 3.2546 3.7310 0.0039 7 6 3.9580 4.9467 0.0053 8 6 5.3226 4.9177 0.0044 9 6 6.0444 3.7217 0.0017 10 6 5.3938 2.5260 0.0008 11 6 4.0023 2.5398 0.0017 12 6 3.4101 1.2796 -0.0005 13 6 4.5229 0.2601 -0.0020 14 1 4.4657 -0.3602 -0.8965 15 6 4.4462 -0.5986 1.2340 16 1 3.6844 -0.4102 1.9760 17 6 5.3485 -1.6249 1.4176 18 7 6.1938 -1.9365 0.4595 19 14 5.3703 -2.5726 3.0271 20 1 6.3891 -1.9851 3.9338 21 1 5.7065 -3.9942 2.7599 22 1 4.0327 -2.4922 3.6671 23 6 5.8308 1.0813 -0.0015 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2030 2.3049 0.0005 28 1 1.2315 4.5111 0.0011 29 1 3.4284 5.8879 0.0065 30 1 5.8635 5.8525 0.0059 31 1 7.1241 3.7459 0.0007 32 1 6.8289 -2.6582 0.5888 33 1 6.4145 0.8618 0.8925 34 1 6.4134 0.8642 -0.8967 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039150175.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:08 Heat of formation + Delta-G solvation = 7.644799 kcal Electronic energy + Delta-G solvation = -18341.352904 eV Core-core repulsion = 15590.108605 eV Total energy + Delta-G solvation = -2751.244300 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.105 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.62834 -38.31842 -35.44749 -34.91666 -32.28745 -29.45022 -29.21658 -28.19718 -26.58100 -25.00024 -23.25641 -21.94179 -20.41257 -19.95214 -17.78190 -16.54274 -16.15711 -15.66897 -15.11494 -14.86756 -14.51517 -13.98461 -13.68227 -13.52440 -13.12642 -12.42363 -12.31554 -12.28998 -11.82446 -11.57122 -11.29271 -10.96492 -10.79858 -10.67122 -10.47134 -10.36995 -10.19930 -9.96933 -9.46168 -9.15694 -8.84556 -8.39053 -7.83246 -6.74743 -6.00271 -4.02823 1.16133 1.63525 2.66041 3.32623 3.39466 3.44129 3.56777 3.97006 4.45683 4.74117 5.05301 5.17340 5.25043 5.35593 5.37267 5.47817 5.49794 5.63917 5.76240 5.80528 5.88013 6.06226 6.23947 6.32475 6.43885 6.68788 6.75941 6.78916 6.89509 7.00503 7.06424 7.33076 7.37558 7.55249 7.59381 7.76240 7.94857 8.09216 8.38161 8.98238 9.59505 11.07824 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.009319 C = 0.006639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.718367 B = 3003.845944 C = 4216.750562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.296 6.296 3 C 0.106 3.894 4 C -0.173 4.173 5 C -0.107 4.107 6 C -0.068 4.068 7 C -0.125 4.125 8 C -0.115 4.115 9 C -0.135 4.135 10 C -0.050 4.050 11 C -0.061 4.061 12 C -0.059 4.059 13 C 0.092 3.908 14 H 0.054 0.946 15 C -0.496 4.496 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.062 4.062 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.093 0.907 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.261 0.739 33 H 0.086 0.914 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.739 9.726 -1.743 11.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.209 6.209 3 C 0.062 3.938 4 C -0.191 4.191 5 C -0.125 4.125 6 C -0.068 4.068 7 C -0.143 4.143 8 C -0.133 4.133 9 C -0.153 4.153 10 C -0.050 4.050 11 C -0.061 4.061 12 C -0.059 4.059 13 C 0.074 3.926 14 H 0.072 0.928 15 C -0.534 4.534 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.099 4.099 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.111 0.889 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.520 9.399 -1.786 11.577 hybrid contribution -0.283 -0.267 0.916 0.995 sum -6.802 9.132 -0.870 11.420 Atomic orbital electron populations 1.22934 0.80550 1.03182 1.00183 1.86319 1.19287 1.26320 1.89017 1.18141 0.90787 0.83887 1.01018 1.20963 0.99383 0.92359 1.06431 1.20707 0.93255 0.96445 1.02049 1.17815 0.93185 0.93175 1.02646 1.20750 0.94088 0.96192 1.03308 1.20705 0.94083 0.97315 1.01202 1.20196 0.99446 0.91126 1.04532 1.20670 0.93395 0.96785 0.94142 1.18256 0.94863 0.92745 1.00206 1.19994 0.91820 0.96322 0.97813 1.18148 0.84916 0.90523 0.98973 0.92790 1.20928 1.14673 1.13625 1.04139 0.92355 1.24941 0.95810 0.96588 0.96534 1.69967 1.21218 1.30107 1.31569 0.86579 0.78378 0.79089 0.84029 1.20728 1.21239 1.19842 1.21267 1.00378 0.86286 1.01961 0.93514 0.93613 0.88879 0.86244 0.86044 0.86470 0.87016 0.86606 0.92924 0.89579 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.80 101.05 0.99 1.38 16 2 O -0.30 -6.11 10.48 -19.39 -0.20 -6.32 16 3 C 0.11 2.23 6.65 -39.45 -0.26 1.97 16 4 C -0.17 -2.98 8.93 -39.53 -0.35 -3.33 16 5 C -0.11 -1.76 9.98 -39.20 -0.39 -2.15 16 6 C -0.07 -1.27 5.75 -107.10 -0.62 -1.89 16 7 C -0.13 -2.00 9.96 -39.38 -0.39 -2.40 16 8 C -0.11 -1.81 9.89 -39.67 -0.39 -2.20 16 9 C -0.13 -2.41 10.00 -39.80 -0.40 -2.81 16 10 C -0.05 -1.06 6.38 -104.93 -0.67 -1.73 16 11 C -0.06 -1.31 5.62 -108.27 -0.61 -1.92 16 12 C -0.06 -1.37 5.56 -104.73 -0.58 -1.96 16 13 C 0.09 2.39 2.81 -92.06 -0.26 2.13 16 14 H 0.05 1.52 8.14 -51.93 -0.42 1.10 16 15 C -0.50 -13.84 8.34 -34.44 -0.29 -14.13 16 16 H 0.06 1.67 7.77 -52.48 -0.41 1.27 16 17 C 0.06 1.74 5.13 -17.82 -0.09 1.65 16 18 N -0.89 -25.30 12.92 55.43 0.72 -24.58 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.06 -1.46 6.01 -27.01 -0.16 -1.62 16 24 H 0.05 0.59 7.64 -51.93 -0.40 0.20 16 25 H 0.05 0.55 7.64 -51.93 -0.40 0.16 16 26 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 27 H 0.12 1.65 6.20 -52.49 -0.33 1.32 16 28 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 29 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.09 2.16 7.53 -51.93 -0.39 1.77 16 34 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 286.84 15.07 4.32 4.32 Total: -1.00 -30.44 286.84 -8.67 -39.11 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.01 Total: -0.04 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -4.47 Total: -28.99 kcal Atomic # 7 Polarization: -25.30 SS G_CDS: 0.72 Total: -24.58 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.20 Total: -6.32 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.44 -8.67 -39.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039150175.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.754 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds