Wall clock time and date at job start Mon Mar 30 2020 06:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35891 * 117.00329 * 2 1 4 4 C 1.40169 * 119.88258 * 359.90729 * 3 2 1 5 5 C 1.36375 * 122.25717 * 179.97438 * 4 3 2 6 6 C 1.40518 * 118.90318 * 0.06519 * 5 4 3 7 7 C 1.40449 * 124.25164 * 180.21931 * 6 5 4 8 8 C 1.36485 * 118.84087 * 180.24759 * 7 6 5 9 9 C 1.39695 * 122.32283 * 359.49643 * 8 7 6 10 10 C 1.36123 * 120.34413 * 0.25948 * 9 8 7 11 11 C 1.39157 * 117.97656 * 0.02562 * 10 9 8 12 12 C 1.36598 * 119.89152 * 179.97438 * 3 2 1 13 13 C 1.50925 * 134.61444 * 359.95254 * 12 3 2 14 14 H 1.08997 * 110.35449 * 299.01809 * 13 12 3 15 15 C 1.50703 * 110.27719 * 61.06211 * 13 12 3 16 16 H 1.07992 * 120.00305 * 357.33334 * 15 13 12 17 17 C 1.37877 * 119.99689 * 177.32655 * 15 13 12 18 18 N 1.31522 * 119.99824 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99934 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46834 * 90.00626 * 19 17 15 21 21 H 1.48505 * 109.47060 * 210.00240 * 19 17 15 22 22 H 1.48493 * 109.47140 * 330.00570 * 19 17 15 23 23 C 1.50933 * 134.62259 * 180.02562 * 10 9 8 24 24 H 1.08998 * 109.46815 * 60.00193 * 1 2 3 25 25 H 1.08997 * 109.47193 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46916 * 299.99958 * 1 2 3 27 27 H 1.08002 * 118.87068 * 0.07518 * 4 3 2 28 28 H 1.08005 * 120.54379 * 180.08385 * 5 4 3 29 29 H 1.08009 * 120.57910 * 0.03103 * 7 6 5 30 30 H 1.08002 * 118.84079 * 179.78123 * 8 7 6 31 31 H 1.08002 * 119.82857 * 180.28496 * 9 8 7 32 32 H 0.97002 * 119.99566 * 179.97438 * 18 17 15 33 33 H 1.09011 * 110.27686 * 298.96505 * 23 10 9 34 34 H 1.08997 * 110.27995 * 60.95712 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2802 2.3848 -0.0020 5 6 1.8486 3.6245 -0.0015 6 6 3.2498 3.7292 -0.0004 7 6 3.9516 4.9458 0.0045 8 6 5.3162 4.9188 -0.0001 9 6 6.0396 3.7237 0.0008 10 6 5.3907 2.5271 0.0011 11 6 3.9992 2.5390 -0.0001 12 6 3.4102 1.2796 0.0005 13 6 4.5230 0.2600 0.0021 14 1 4.4673 -0.3607 0.8963 15 6 4.4466 -0.5984 -1.2342 16 1 3.6416 -0.4579 -1.9403 17 6 5.4045 -1.5632 -1.4639 18 7 6.3846 -1.7346 -0.6037 19 14 5.3094 -2.6277 -2.9959 20 1 6.0586 -1.9750 -4.0994 21 1 5.9053 -3.9580 -2.7121 22 1 3.8888 -2.7964 -3.3940 23 6 5.8297 1.0830 0.0025 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2032 2.3049 -0.0022 28 1 1.2317 4.5111 -0.0017 29 1 3.4207 5.8864 0.0083 30 1 5.8558 5.8543 0.0001 31 1 7.1193 3.7493 0.0017 32 1 7.0582 -2.4136 -0.7651 33 1 6.4142 0.8650 -0.8915 34 1 6.4137 0.8665 0.8970 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039150176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:11 Heat of formation + Delta-G solvation = 8.063690 kcal Electronic energy + Delta-G solvation = -18354.466482 eV Core-core repulsion = 15603.240347 eV Total energy + Delta-G solvation = -2751.226135 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.64634 -38.32017 -35.46488 -34.92474 -32.28592 -29.43850 -29.21940 -28.16595 -26.58839 -25.00828 -23.24825 -21.93838 -20.38794 -19.94907 -17.77942 -16.54511 -16.14181 -15.65439 -15.12210 -14.85061 -14.55548 -13.97817 -13.68048 -13.49992 -13.12166 -12.41939 -12.33507 -12.27760 -11.75678 -11.56442 -11.26393 -10.96550 -10.81313 -10.65355 -10.46999 -10.36088 -10.17662 -9.95712 -9.50151 -9.16234 -8.81580 -8.38824 -7.81923 -6.74226 -5.99964 -4.03763 1.17053 1.64362 2.67756 3.32875 3.39151 3.44016 3.57657 3.96217 4.45551 4.75368 5.06119 5.18407 5.26737 5.35916 5.37854 5.47290 5.49896 5.65580 5.75841 5.81225 5.89545 6.07842 6.25425 6.34081 6.45533 6.69905 6.77697 6.82553 6.91907 7.02375 7.07520 7.35470 7.43997 7.56092 7.60494 7.77542 7.94881 8.08596 8.37911 8.97260 9.59070 11.07562 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.017628 B = 0.009379 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.009623 B = 2984.707107 C = 4226.954692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.297 6.297 3 C 0.106 3.894 4 C -0.174 4.174 5 C -0.106 4.106 6 C -0.068 4.068 7 C -0.127 4.127 8 C -0.114 4.114 9 C -0.136 4.136 10 C -0.050 4.050 11 C -0.061 4.061 12 C -0.058 4.058 13 C 0.094 3.906 14 H 0.049 0.951 15 C -0.495 4.495 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.057 4.057 24 H 0.046 0.954 25 H 0.093 0.907 26 H 0.045 0.955 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.261 0.739 33 H 0.090 0.910 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.054 9.312 1.981 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.211 6.211 3 C 0.061 3.939 4 C -0.192 4.192 5 C -0.124 4.124 6 C -0.068 4.068 7 C -0.145 4.145 8 C -0.132 4.132 9 C -0.154 4.154 10 C -0.050 4.050 11 C -0.061 4.061 12 C -0.059 4.059 13 C 0.075 3.925 14 H 0.067 0.933 15 C -0.533 4.533 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.095 4.095 24 H 0.065 0.935 25 H 0.111 0.889 26 H 0.064 0.936 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.820 9.000 2.013 11.470 hybrid contribution -0.347 -0.318 -0.879 0.997 sum -7.167 8.682 1.135 11.315 Atomic orbital electron populations 1.22932 0.80529 1.03170 1.00208 1.86308 1.19317 1.26380 1.89057 1.18152 0.90794 0.83878 1.01062 1.20960 0.99368 0.92367 1.06527 1.20597 0.93331 0.96456 1.02046 1.17701 0.93223 0.93207 1.02640 1.20751 0.94112 0.96177 1.03460 1.20710 0.94079 0.97324 1.01102 1.20198 0.99455 0.91126 1.04629 1.20743 0.93381 0.96955 0.93888 1.18210 0.94908 0.92731 1.00243 1.19954 0.91790 0.96399 0.97755 1.18143 0.85108 0.90580 0.98622 0.93338 1.20948 1.10230 1.16492 1.05650 0.92318 1.24949 0.95422 0.96973 0.96669 1.69965 1.13609 1.34015 1.35437 0.86564 0.78303 0.79765 0.83260 1.20729 1.21216 1.19857 1.21184 1.00160 0.85805 1.02307 0.93500 0.88889 0.93602 0.86271 0.86054 0.86491 0.87040 0.86609 0.92911 0.89152 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.80 101.05 0.99 1.38 16 2 O -0.30 -6.10 10.48 -19.40 -0.20 -6.31 16 3 C 0.11 2.22 6.65 -39.45 -0.26 1.96 16 4 C -0.17 -2.99 8.93 -39.53 -0.35 -3.35 16 5 C -0.11 -1.76 9.95 -39.39 -0.39 -2.15 16 6 C -0.07 -1.27 5.73 -107.30 -0.61 -1.88 16 7 C -0.13 -2.05 9.96 -39.38 -0.39 -2.44 16 8 C -0.11 -1.81 9.89 -39.67 -0.39 -2.20 16 9 C -0.14 -2.46 10.00 -39.80 -0.40 -2.86 16 10 C -0.05 -1.06 6.38 -104.93 -0.67 -1.73 16 11 C -0.06 -1.33 5.61 -108.35 -0.61 -1.93 16 12 C -0.06 -1.36 5.56 -104.81 -0.58 -1.95 16 13 C 0.09 2.42 2.94 -92.06 -0.27 2.15 16 14 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.50 -13.82 8.44 -34.44 -0.29 -14.12 16 16 H 0.06 1.68 7.76 -52.49 -0.41 1.27 16 17 C 0.06 1.69 5.09 -17.82 -0.09 1.60 16 18 N -0.89 -25.18 12.35 55.43 0.68 -24.50 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.06 -1.37 5.65 -27.02 -0.15 -1.52 16 24 H 0.05 0.59 7.64 -51.93 -0.40 0.20 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.05 0.55 7.65 -51.93 -0.40 0.16 16 27 H 0.12 1.65 6.20 -52.49 -0.33 1.32 16 28 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 29 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.09 2.32 7.23 -51.92 -0.38 1.95 16 34 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 LS Contribution 285.71 15.07 4.31 4.31 Total: -1.00 -30.28 285.71 -8.71 -38.99 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.00 Total: 0.05 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -4.48 Total: -29.04 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.68 Total: -24.50 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.20 Total: -6.31 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.28 -8.71 -38.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039150176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.051 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds