Wall clock time and date at job start Mon Mar 30 2020 06:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35891 * 117.00329 * 2 1 4 4 C 1.40169 * 119.88258 * 359.90729 * 3 2 1 5 5 C 1.36375 * 122.25717 * 179.97438 * 4 3 2 6 6 C 1.40518 * 118.90318 * 0.06519 * 5 4 3 7 7 C 1.40449 * 124.25164 * 180.21931 * 6 5 4 8 8 C 1.36485 * 118.84087 * 180.24759 * 7 6 5 9 9 C 1.39695 * 122.32283 * 359.49643 * 8 7 6 10 10 C 1.36123 * 120.34413 * 0.25948 * 9 8 7 11 11 C 1.39157 * 117.97656 * 0.02562 * 10 9 8 12 12 C 1.36598 * 119.89152 * 179.97438 * 3 2 1 13 13 C 1.50925 * 134.61444 * 359.95254 * 12 3 2 14 14 H 1.08997 * 110.35449 * 299.01809 * 13 12 3 15 15 C 1.50703 * 110.27719 * 61.06211 * 13 12 3 16 16 H 1.07992 * 120.00305 * 357.33334 * 15 13 12 17 17 C 1.37877 * 119.99689 * 177.32655 * 15 13 12 18 18 N 1.31522 * 119.99824 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99934 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46834 * 90.00626 * 19 17 15 21 21 H 1.48505 * 109.47060 * 210.00240 * 19 17 15 22 22 H 1.48493 * 109.47140 * 330.00570 * 19 17 15 23 23 C 1.50933 * 134.62259 * 180.02562 * 10 9 8 24 24 H 1.08998 * 109.46815 * 60.00193 * 1 2 3 25 25 H 1.08997 * 109.47193 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46916 * 299.99958 * 1 2 3 27 27 H 1.08002 * 118.87068 * 0.07518 * 4 3 2 28 28 H 1.08005 * 120.54379 * 180.08385 * 5 4 3 29 29 H 1.08009 * 120.57910 * 0.03103 * 7 6 5 30 30 H 1.08002 * 118.84079 * 179.78123 * 8 7 6 31 31 H 1.08002 * 119.82857 * 180.28496 * 9 8 7 32 32 H 0.97002 * 119.99566 * 179.97438 * 18 17 15 33 33 H 1.09011 * 110.27686 * 298.96505 * 23 10 9 34 34 H 1.08997 * 110.27995 * 60.95712 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2802 2.3848 -0.0020 5 6 1.8486 3.6245 -0.0015 6 6 3.2498 3.7292 -0.0004 7 6 3.9516 4.9458 0.0045 8 6 5.3162 4.9188 -0.0001 9 6 6.0396 3.7237 0.0008 10 6 5.3907 2.5271 0.0011 11 6 3.9992 2.5390 -0.0001 12 6 3.4102 1.2796 0.0005 13 6 4.5230 0.2600 0.0021 14 1 4.4673 -0.3607 0.8963 15 6 4.4466 -0.5984 -1.2342 16 1 3.6416 -0.4579 -1.9403 17 6 5.4045 -1.5632 -1.4639 18 7 6.3846 -1.7346 -0.6037 19 14 5.3094 -2.6277 -2.9959 20 1 6.0586 -1.9750 -4.0994 21 1 5.9053 -3.9580 -2.7121 22 1 3.8888 -2.7964 -3.3940 23 6 5.8297 1.0830 0.0025 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2032 2.3049 -0.0022 28 1 1.2317 4.5111 -0.0017 29 1 3.4207 5.8864 0.0083 30 1 5.8558 5.8543 0.0001 31 1 7.1193 3.7493 0.0017 32 1 7.0582 -2.4136 -0.7651 33 1 6.4142 0.8650 -0.8915 34 1 6.4137 0.8665 0.8970 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039150176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:10 Heat of formation + Delta-G solvation = -9.015056 kcal Electronic energy + Delta-G solvation = -18355.207072 eV Core-core repulsion = 15603.240347 eV Total energy + Delta-G solvation = -2751.966725 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.11820 -39.75650 -37.12172 -36.30556 -34.28923 -30.89309 -30.61936 -29.90969 -27.85010 -26.89365 -24.85281 -23.34462 -22.08442 -21.46946 -19.14833 -18.50687 -17.67972 -17.13280 -16.60630 -16.49508 -16.11800 -15.44579 -15.32510 -15.01006 -14.50017 -14.03703 -13.78439 -13.53174 -13.50722 -13.23153 -12.88992 -12.71180 -12.49201 -12.27085 -12.13708 -11.99274 -11.70509 -11.44754 -11.24223 -11.11425 -10.59362 -10.29558 -9.20648 -8.34709 -8.05413 -6.25045 -0.23669 0.23417 1.23775 1.37668 1.38238 1.49677 2.16723 2.41996 2.64517 3.13369 3.29591 3.66890 3.86856 3.99899 4.14323 4.33375 4.39316 4.44007 4.44535 4.52802 4.67656 4.71934 4.75627 4.81824 4.88398 5.08911 5.26577 5.36354 5.41364 5.45869 5.57011 5.67987 5.72732 5.79567 5.81944 6.09782 6.23249 6.28642 6.70532 6.79108 7.40520 8.93667 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.017628 B = 0.009379 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.009623 B = 2984.707107 C = 4226.954692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.338 6.338 3 C 0.105 3.895 4 C -0.183 4.183 5 C -0.078 4.078 6 C -0.092 4.092 7 C -0.104 4.104 8 C -0.121 4.121 9 C -0.118 4.118 10 C -0.102 4.102 11 C -0.074 4.074 12 C -0.124 4.124 13 C 0.092 3.908 14 H 0.001 0.999 15 C -0.510 4.510 16 H 0.042 0.958 17 C 0.014 3.986 18 N -0.918 5.918 19 Si 0.956 3.044 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.272 1.272 23 C -0.041 4.041 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.069 0.931 27 H 0.159 0.841 28 H 0.174 0.826 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.133 0.867 32 H 0.263 0.737 33 H 0.057 0.943 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 12.842 1.303 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.061 3.939 4 C -0.201 4.201 5 C -0.096 4.096 6 C -0.092 4.092 7 C -0.121 4.121 8 C -0.139 4.139 9 C -0.136 4.136 10 C -0.102 4.102 11 C -0.074 4.074 12 C -0.125 4.125 13 C 0.074 3.926 14 H 0.019 0.981 15 C -0.548 4.548 16 H 0.060 0.940 17 C -0.185 4.185 18 N -0.557 5.557 19 Si 0.781 3.219 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.197 1.197 23 C -0.078 4.078 24 H 0.083 0.917 25 H 0.126 0.874 26 H 0.088 0.912 27 H 0.176 0.824 28 H 0.192 0.808 29 H 0.184 0.816 30 H 0.174 0.826 31 H 0.151 0.849 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.909 12.532 1.338 15.434 hybrid contribution 0.197 -1.310 -0.616 1.461 sum -8.711 11.222 0.722 14.225 Atomic orbital electron populations 1.23300 0.77308 1.04985 1.02142 1.86245 1.22893 1.27206 1.88930 1.18545 0.90445 0.85413 0.99524 1.21296 1.01026 0.91201 1.06604 1.21214 0.92733 0.97862 0.97762 1.18156 0.94518 0.93023 1.03541 1.21320 0.94287 0.96779 0.99721 1.21152 0.94573 0.97749 1.00439 1.20609 1.00686 0.90839 1.01424 1.20550 0.94135 0.96255 0.99232 1.18336 0.95104 0.93441 1.00517 1.19847 0.92764 0.96402 1.03515 1.17889 0.87987 0.91056 0.95671 0.98149 1.21119 1.09846 1.17530 1.06305 0.93980 1.25730 0.94998 0.98135 0.99643 1.70086 1.14098 1.34519 1.36989 0.85584 0.78287 0.78266 0.79735 1.19853 1.20242 1.19700 1.20703 0.98542 0.88698 0.99890 0.91725 0.87409 0.91209 0.82351 0.80835 0.81639 0.82585 0.84941 0.92758 0.92442 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.80 113.37 1.11 1.57 16 2 O -0.34 -14.34 10.48 -92.33 -0.97 -15.31 16 3 C 0.11 4.52 6.65 22.36 0.15 4.66 16 4 C -0.18 -5.80 8.93 22.30 0.20 -5.60 16 5 C -0.08 -2.23 9.95 22.39 0.22 -2.00 16 6 C -0.09 -3.19 5.73 -21.60 -0.12 -3.31 16 7 C -0.10 -2.79 9.96 22.40 0.22 -2.56 16 8 C -0.12 -3.34 9.89 22.21 0.22 -3.12 16 9 C -0.12 -4.13 10.00 22.13 0.22 -3.90 16 10 C -0.10 -4.55 6.38 -20.06 -0.13 -4.67 16 11 C -0.07 -3.29 5.61 -22.28 -0.13 -3.41 16 12 C -0.12 -6.20 5.56 -19.99 -0.11 -6.31 16 13 C 0.09 5.27 2.94 -11.73 -0.03 5.23 16 14 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 15 C -0.51 -30.76 8.44 25.60 0.22 -30.55 16 16 H 0.04 2.59 7.76 -2.91 -0.02 2.57 16 17 C 0.01 0.80 5.09 84.65 0.43 1.23 16 18 N -0.92 -55.33 12.35 21.45 0.26 -55.07 16 19 Si 0.96 46.04 29.54 68.60 2.03 48.06 16 20 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 23 C -0.04 -2.15 5.65 30.41 0.17 -1.98 16 24 H 0.06 1.48 7.64 -2.39 -0.02 1.46 16 25 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.07 1.51 7.65 -2.39 -0.02 1.49 16 27 H 0.16 3.65 6.20 -2.91 -0.02 3.63 16 28 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 29 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 31 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 32 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.06 3.26 7.23 -2.38 -0.02 3.25 16 34 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -73.94 285.71 5.07 -68.87 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.10 Total: 8.17 kcal Atomic # 6 Polarization: -57.38 SS G_CDS: 2.64 Total: -54.74 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.26 Total: -55.07 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.97 Total: -15.31 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -73.94 5.07 -68.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039150176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.858 kcal (2) G-P(sol) polarization free energy of solvation -73.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds