Wall clock time and date at job start Mon Mar 30 2020 07:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29022 * 124.91319 * 2 1 4 4 C 1.31789 * 117.11726 * 179.75093 * 3 2 1 5 5 C 1.50709 * 122.74604 * 180.33175 * 4 3 2 6 6 C 1.33636 * 114.50099 * 0.51928 * 4 3 2 7 7 C 1.50706 * 126.03451 * 179.78478 * 6 4 3 8 8 H 1.08996 * 109.47505 * 344.72127 * 7 6 4 9 9 C 1.53004 * 109.46799 * 104.71836 * 7 6 4 10 10 N 1.46901 * 109.47096 * 224.71921 * 7 6 4 11 11 C 1.46890 * 110.99970 * 85.40450 * 10 7 6 12 12 H 1.09001 * 109.47204 * 326.69134 * 11 10 7 13 13 C 1.53000 * 109.47303 * 86.69514 * 11 10 7 14 14 C 1.50705 * 109.47038 * 206.69412 * 11 10 7 15 15 H 1.08000 * 119.99959 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00180 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99892 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00189 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47177 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47324 * 119.99895 * 18 16 14 21 21 H 1.48504 * 109.46933 * 240.00037 * 18 16 14 22 22 S 1.70968 * 124.91552 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.47223 * 269.96233 * 1 2 3 24 24 H 1.09007 * 109.46902 * 29.95790 * 1 2 3 25 25 H 1.08999 * 109.47536 * 149.95809 * 1 2 3 26 26 H 1.08993 * 109.47099 * 270.20088 * 5 4 3 27 27 H 1.08994 * 109.46998 * 30.20729 * 5 4 3 28 28 H 1.08998 * 109.46793 * 150.20274 * 5 4 3 29 29 H 1.08992 * 109.46920 * 177.64589 * 9 7 6 30 30 H 1.08989 * 109.47276 * 297.65067 * 9 7 6 31 31 H 1.09007 * 109.46669 * 57.65024 * 9 7 6 32 32 H 1.00902 * 110.99683 * 209.36070 * 10 7 6 33 33 H 1.08996 * 109.47349 * 66.30592 * 13 11 10 34 34 H 1.09003 * 109.46933 * 186.30588 * 13 11 10 35 35 H 1.09004 * 109.46930 * 306.30186 * 13 11 10 36 36 H 0.96994 * 120.00287 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8792 0.0051 5 6 4.5308 2.0245 0.0131 6 6 3.9353 -0.4007 -0.0014 7 6 5.3575 -0.8995 -0.0024 8 1 6.0288 -0.0829 -0.2679 9 6 5.7157 -1.4217 1.3905 10 7 5.4950 -1.9849 -0.9826 11 6 5.7574 -1.4512 -2.3257 12 1 5.2401 -0.4993 -2.4459 13 6 7.2621 -1.2403 -2.5057 14 6 5.2597 -2.4274 -3.3603 15 1 4.7953 -3.3521 -3.0510 16 6 5.3982 -2.1406 -4.7018 17 7 5.9642 -1.0148 -5.0786 18 14 4.7819 -3.3509 -5.9842 19 1 4.1901 -4.5321 -5.3061 20 1 3.7505 -2.6957 -6.8281 21 1 5.9158 -3.7876 -6.8380 22 16 2.4856 -1.4019 -0.0006 23 1 -0.3634 -0.0007 1.0277 24 1 -0.3633 0.8904 -0.5132 25 1 -0.3634 -0.8896 -0.5145 26 1 4.7686 2.3063 -1.0126 27 1 4.0898 2.8762 0.5310 28 1 5.4424 1.7193 0.5267 29 1 6.7299 -1.8207 1.3791 30 1 5.6540 -0.6063 2.1111 31 1 5.0182 -2.2101 1.6733 32 1 6.2154 -2.6343 -0.7044 33 1 7.7679 -2.2057 -2.4973 34 1 7.4478 -0.7411 -3.4568 35 1 7.6425 -0.6236 -1.6914 36 1 6.0613 -0.8128 -6.0223 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040518698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:31 Heat of formation + Delta-G solvation = 29.748449 kcal Electronic energy + Delta-G solvation = -17067.205540 eV Core-core repulsion = 14484.656429 eV Total energy + Delta-G solvation = -2582.549111 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.51291 -36.73353 -33.61834 -32.19796 -30.55256 -28.94112 -26.88413 -26.74433 -25.10870 -22.50342 -21.55458 -20.26227 -18.26970 -17.31114 -16.27085 -15.06162 -14.89440 -14.78437 -14.12544 -13.64557 -13.40937 -13.03418 -12.93510 -12.44473 -12.40127 -12.21892 -12.04237 -11.73802 -11.49666 -11.45249 -11.27674 -10.92526 -10.83898 -10.57505 -10.43272 -10.12348 -9.87906 -9.18041 -8.97636 -8.62894 -8.36529 -8.03763 -7.37487 -5.98102 -4.00354 1.22817 1.90639 2.38651 3.22640 3.31569 3.39394 3.44407 4.44053 4.47152 5.03121 5.26537 5.31584 5.34405 5.51770 5.54675 5.56841 5.64259 5.70222 5.90327 5.95741 6.07138 6.12084 6.17600 6.31698 6.39141 6.64938 6.72040 6.81021 7.06310 7.33656 7.70266 7.87737 8.22392 8.24346 8.49227 8.57528 9.06340 9.64563 11.09620 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.019608 B = 0.007526 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.666839 B = 3719.546896 C = 4296.425349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.005 3.995 3 N -0.473 5.473 4 C 0.041 3.959 5 C -0.073 4.073 6 C -0.177 4.177 7 C 0.152 3.848 8 H 0.060 0.940 9 C -0.147 4.147 10 N -0.678 5.678 11 C 0.213 3.787 12 H 0.033 0.967 13 C -0.166 4.166 14 C -0.492 4.492 15 H 0.063 0.937 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.286 1.286 22 S 0.170 5.830 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.331 0.669 33 H 0.031 0.969 34 H 0.085 0.915 35 H 0.004 0.996 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.605 1.476 12.009 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.272 4.272 3 N -0.189 5.189 4 C -0.091 4.091 5 C -0.132 4.132 6 C -0.299 4.299 7 C 0.039 3.961 8 H 0.077 0.923 9 C -0.206 4.206 10 N -0.310 5.310 11 C 0.106 3.894 12 H 0.051 0.949 13 C -0.225 4.225 14 C -0.531 4.531 15 H 0.081 0.919 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.212 1.212 22 S 0.426 5.574 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.150 0.850 33 H 0.050 0.950 34 H 0.104 0.896 35 H 0.023 0.977 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.747 0.925 11.731 13.096 hybrid contribution 1.258 0.463 -0.926 1.629 sum -4.489 1.388 10.806 11.783 Atomic orbital electron populations 1.20303 0.85995 1.03722 1.02967 1.26821 1.01454 0.92644 1.06289 1.66045 1.04413 1.32220 1.16241 1.20007 0.90164 0.94025 1.04914 1.20272 0.95626 0.94485 1.02819 1.25818 0.99878 0.95096 1.09104 1.19798 0.88296 0.95131 0.92853 0.92265 1.21989 1.01499 1.01234 0.95837 1.60832 1.52110 1.14984 1.03043 1.19201 0.91068 0.95745 0.83432 0.94930 1.22416 0.99729 0.99050 1.01299 1.21152 1.37420 1.04780 0.89754 0.91898 1.24941 0.95533 0.95482 0.98551 1.69903 1.44506 1.23417 1.15851 0.86490 0.78415 0.81333 0.81473 1.19694 1.21186 1.21220 1.83860 0.96420 1.10674 1.66461 0.90414 0.89967 0.90480 0.90860 0.91341 0.91252 0.92152 0.92485 0.91992 0.85044 0.94988 0.89628 0.97738 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.46 36.01 0.38 -0.46 16 2 C 0.01 0.08 7.39 -13.46 -0.10 -0.02 16 3 N -0.47 -8.75 10.53 -8.05 -0.08 -8.83 16 4 C 0.04 0.75 6.74 -84.22 -0.57 0.19 16 5 C -0.07 -1.12 9.81 36.01 0.35 -0.77 16 6 C -0.18 -3.25 5.16 -35.92 -0.19 -3.44 16 7 C 0.15 2.68 2.57 -68.86 -0.18 2.50 16 8 H 0.06 1.08 5.87 -51.93 -0.30 0.78 16 9 C -0.15 -2.05 9.18 37.16 0.34 -1.71 16 10 N -0.68 -13.90 5.94 -102.17 -0.61 -14.51 16 11 C 0.21 5.27 2.37 -68.87 -0.16 5.11 16 12 H 0.03 0.92 7.64 -51.93 -0.40 0.52 16 13 C -0.17 -3.91 8.84 37.16 0.33 -3.58 16 14 C -0.49 -13.57 8.84 -34.44 -0.30 -13.87 16 15 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 16 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 17 N -0.90 -25.87 11.39 55.43 0.63 -25.23 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 S 0.17 2.90 23.07 -107.50 -2.48 0.42 16 23 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.95 7.04 -51.93 -0.37 0.58 16 29 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.33 6.33 8.03 -39.29 -0.32 6.01 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 2.26 6.27 -51.93 -0.33 1.93 16 35 H 0.00 0.08 7.51 -51.93 -0.39 -0.31 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 310.14 15.07 4.67 4.67 Total: -1.00 -30.42 310.14 -8.52 -38.94 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.44 Total: 2.44 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -0.19 Total: -14.58 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.06 Total: -48.57 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.48 Total: 0.42 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.42 -8.52 -38.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040518698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.688 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds