Wall clock time and date at job start Mon Mar 30 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47194 * 2 1 4 4 N 1.46499 * 109.47588 * 120.00312 * 2 1 3 5 5 C 1.46500 * 119.99635 * 306.02478 * 4 2 1 6 6 C 1.50706 * 109.47471 * 89.99682 * 5 4 2 7 7 H 1.08003 * 119.99355 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00330 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00241 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99887 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47159 * 89.99508 * 10 8 6 12 12 H 1.48505 * 109.46933 * 209.99348 * 10 8 6 13 13 H 1.48496 * 109.46961 * 329.99133 * 10 8 6 14 14 C 1.39060 * 120.00308 * 126.02156 * 4 2 1 15 15 C 1.39126 * 119.69377 * 12.90645 * 14 4 2 16 16 C 1.38299 * 119.11219 * 179.97438 * 15 14 4 17 17 C 1.38970 * 118.49519 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 120.34579 * 179.97438 * 17 16 15 19 19 C 1.38128 * 119.30363 * 359.97438 * 17 16 15 20 20 N 1.31981 * 120.83915 * 359.75260 * 19 17 16 21 21 H 1.08996 * 109.47143 * 59.99537 * 1 2 3 22 22 H 1.09001 * 109.47230 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46691 * 299.99376 * 1 2 3 24 24 H 1.08997 * 109.47262 * 240.00140 * 2 1 3 25 25 H 1.08996 * 109.47183 * 60.00384 * 3 2 1 26 26 H 1.09000 * 109.47242 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47453 * 300.00273 * 3 2 1 28 28 H 1.09004 * 109.47235 * 209.99364 * 5 4 2 29 29 H 1.09002 * 109.47575 * 329.99520 * 5 4 2 30 30 H 0.96997 * 120.00257 * 180.02562 * 9 8 6 31 31 H 1.08003 * 120.44226 * 359.95708 * 15 14 4 32 32 H 1.07998 * 120.75310 * 180.02562 * 16 15 14 33 33 H 1.07995 * 119.57890 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5591 -0.2717 2.5226 6 6 0.3182 -1.0432 2.8915 7 1 -0.0880 -1.7724 2.2060 8 6 -0.2986 -0.8183 4.1038 9 7 -1.3818 -1.4912 4.4255 10 14 0.4035 0.4434 5.2891 11 1 -0.2032 1.7710 5.0154 12 1 0.0963 0.0369 6.6840 13 1 1.8753 0.5253 5.1101 14 6 2.9180 -1.7439 1.0723 15 6 3.5561 -1.9659 -0.1439 16 6 4.4488 -3.0164 -0.2535 17 6 4.6742 -3.8140 0.8620 18 17 5.7844 -5.1459 0.7780 19 6 4.0056 -3.5358 2.0383 20 7 3.1632 -2.5227 2.1143 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 2.3407 -0.4683 3.2566 29 1 1.3333 0.7946 2.5091 30 1 -1.8160 -1.3326 5.2783 31 1 3.3567 -1.3265 -0.9912 32 1 4.9592 -3.2126 -1.1848 33 1 4.1771 -4.1530 2.9077 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530849.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:23 Heat of formation + Delta-G solvation = 37.468819 kcal Electronic energy + Delta-G solvation = -16768.346555 eV Core-core repulsion = 14048.255424 eV Total energy + Delta-G solvation = -2720.091132 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.91275 -37.21950 -36.07463 -32.87665 -32.15607 -31.60058 -29.59587 -27.07779 -26.72568 -23.66506 -22.68434 -21.70851 -19.41509 -17.40989 -16.83927 -16.18631 -15.88798 -14.75549 -14.49274 -14.03587 -13.79020 -13.27209 -12.99997 -12.86229 -12.51115 -12.23680 -11.88856 -11.79852 -11.68257 -11.42373 -11.03903 -10.95560 -10.84725 -10.50651 -10.29522 -10.14807 -9.49853 -9.46947 -9.00985 -8.83525 -8.55863 -6.86564 -6.05032 -4.01477 1.57924 1.68880 2.47424 3.26280 3.34689 3.38202 3.59424 4.25676 4.41160 4.89435 5.06700 5.17642 5.27832 5.35455 5.38747 5.47951 5.60991 5.89127 5.98870 6.04012 6.13173 6.18536 6.28250 6.33115 6.53261 6.63197 6.77969 6.97808 7.00272 7.63207 7.66650 8.04485 8.52964 8.71190 9.00933 9.55470 11.08417 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.020771 B = 0.006967 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.678002 B = 4018.022479 C = 4868.332224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.146 3.854 3 C -0.163 4.163 4 N -0.575 5.575 5 C 0.225 3.775 6 C -0.512 4.512 7 H 0.075 0.925 8 C 0.071 3.929 9 N -0.899 5.899 10 Si 0.869 3.131 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.422 3.578 15 C -0.248 4.248 16 C -0.026 4.026 17 C -0.172 4.172 18 Cl -0.087 7.087 19 C 0.171 3.829 20 N -0.504 5.504 21 H 0.050 0.950 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.023 0.977 30 H 0.263 0.737 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.553 0.863 -9.979 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 C -0.222 4.222 4 N -0.283 5.283 5 C 0.105 3.895 6 C -0.551 4.551 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.538 5.538 10 Si 0.697 3.303 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.185 3.815 15 C -0.273 4.273 16 C -0.052 4.052 17 C -0.205 4.205 18 Cl -0.059 7.059 19 C 0.009 3.991 20 N -0.220 5.220 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.894 1.137 -9.030 13.443 hybrid contribution 0.685 0.230 -0.007 0.722 sum 10.578 1.367 -9.037 13.980 Atomic orbital electron populations 1.22119 0.93945 1.03073 1.02078 1.21014 0.95239 0.92310 0.87276 1.22209 1.00989 0.96624 1.02347 1.46966 1.42979 1.30373 1.07943 1.19621 0.96268 0.94603 0.79055 1.21314 1.08118 1.22454 1.03189 0.90666 1.24832 0.94738 0.95967 0.97506 1.69892 1.19464 1.41550 1.22931 0.86957 0.80201 0.81963 0.81224 1.20351 1.21088 1.19000 1.18534 0.87336 0.86857 0.88734 1.21403 1.03743 1.03221 0.98975 1.21031 0.94985 0.92208 0.97006 1.21560 1.03812 0.97120 0.98001 1.98306 1.62190 1.46729 1.98649 1.22467 0.88849 0.92459 0.95344 1.67647 1.17835 1.05841 1.30699 0.93119 0.92112 0.90314 0.90345 0.91819 0.92795 0.91936 0.94408 0.95945 0.92737 0.84824 0.84960 0.82713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.34 37.16 0.31 -2.29 16 2 C 0.15 2.32 3.06 -67.93 -0.21 2.11 16 3 C -0.16 -2.21 9.27 37.16 0.34 -1.87 16 4 N -0.58 -11.42 2.50 -167.60 -0.42 -11.84 16 5 C 0.23 5.24 3.44 -5.19 -0.02 5.22 16 6 C -0.51 -13.97 8.41 -34.44 -0.29 -14.26 16 7 H 0.08 2.29 7.76 -52.48 -0.41 1.89 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 9 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 10 Si 0.87 21.09 27.47 -169.99 -4.67 16.42 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 14 C 0.42 8.19 7.30 -154.98 -1.13 7.06 16 15 C -0.25 -3.85 9.22 -39.23 -0.36 -4.21 16 16 C -0.03 -0.37 9.97 -39.29 -0.39 -0.76 16 17 C -0.17 -2.62 6.34 -39.35 -0.25 -2.87 16 18 Cl -0.09 -1.14 28.98 -51.86 -1.50 -2.65 16 19 C 0.17 2.96 10.97 -17.53 -0.19 2.77 16 20 N -0.50 -10.51 9.30 -12.40 -0.12 -10.63 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.06 1.15 7.95 -51.93 -0.41 0.73 16 23 H 0.08 1.53 6.93 -51.93 -0.36 1.17 16 24 H 0.08 1.08 5.60 -51.93 -0.29 0.79 16 25 H 0.06 0.95 6.91 -51.93 -0.36 0.59 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.94 6.66 -51.93 -0.35 0.60 16 29 H 0.02 0.51 6.15 -51.93 -0.32 0.19 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.13 1.74 6.06 -52.48 -0.32 1.42 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 33 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 287.61 15.07 4.33 4.33 Total: -1.00 -30.25 287.61 -7.98 -38.23 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.09 Total: -0.24 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -2.28 Total: -7.19 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.24 Total: -48.91 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.65 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.25 -7.98 -38.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530849.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.694 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds