Wall clock time and date at job start Mon Mar 30 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47380 * 2 1 4 4 N 1.46910 * 109.46722 * 119.99366 * 2 1 3 5 5 C 1.46897 * 111.00023 * 52.14672 * 4 2 1 6 6 C 1.50709 * 109.47124 * 58.88777 * 5 4 2 7 7 H 1.08000 * 119.99316 * 4.37248 * 6 5 4 8 8 C 1.37870 * 120.00235 * 184.36115 * 6 5 4 9 9 N 1.31513 * 119.99693 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00187 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47049 * 0.02562 * 10 8 6 12 12 H 1.48491 * 109.47002 * 120.00418 * 10 8 6 13 13 H 1.48501 * 109.47076 * 240.00422 * 10 8 6 14 14 C 1.39068 * 110.99551 * 176.10203 * 4 2 1 15 15 N 1.32391 * 119.71316 * 337.44642 * 14 4 2 16 16 C 1.31964 * 121.63472 * 180.02562 * 15 14 4 17 17 C 1.38050 * 120.87815 * 359.97438 * 16 15 14 18 18 C 1.38853 * 119.33580 * 0.02562 * 17 16 15 19 19 C 1.38416 * 118.49565 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.46119 * 179.97438 * 19 18 17 21 21 H 1.09007 * 109.47515 * 294.07303 * 1 2 3 22 22 H 1.09003 * 109.46741 * 54.07328 * 1 2 3 23 23 H 1.09001 * 109.47663 * 174.07095 * 1 2 3 24 24 H 1.08993 * 109.47488 * 239.99312 * 2 1 3 25 25 H 1.08991 * 109.47240 * 183.86425 * 3 2 1 26 26 H 1.08998 * 109.46482 * 303.86601 * 3 2 1 27 27 H 1.08999 * 109.46973 * 63.86044 * 3 2 1 28 28 H 1.08992 * 109.47434 * 178.88920 * 5 4 2 29 29 H 1.09003 * 109.46978 * 298.89543 * 5 4 2 30 30 H 0.97006 * 119.99489 * 179.97438 * 9 8 6 31 31 H 1.07998 * 119.56202 * 180.02562 * 16 15 14 32 32 H 1.07993 * 120.33364 * 179.74699 * 17 16 15 33 33 H 1.08000 * 120.75044 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 1.4016 -2.0186 1.3311 6 6 1.7152 -2.8424 0.1087 7 1 2.3714 -2.4491 -0.6536 8 6 1.1646 -4.0980 -0.0364 9 7 0.3653 -4.5767 0.8919 10 14 1.5539 -5.1194 -1.5512 11 1 2.4717 -4.3598 -2.4378 12 1 2.2034 -6.3893 -1.1384 13 1 0.2965 -5.4210 -2.2814 14 6 3.4069 -0.7879 1.1885 15 7 4.0608 -0.7109 0.0399 16 6 5.3765 -0.7973 -0.0147 17 6 6.1233 -0.9718 1.1331 18 6 5.4767 -1.0576 2.3589 19 6 4.0959 -0.9647 2.3851 20 17 3.2354 -1.0660 3.8894 21 1 -0.3634 0.4192 0.9383 22 1 -0.3633 0.6030 -0.8322 23 1 -0.3634 -1.0221 -0.1062 24 1 1.8933 -0.5139 -0.8898 25 1 3.1277 1.4433 -0.0693 26 1 1.6212 1.9759 -0.8533 27 1 1.7343 1.9360 0.9226 28 1 1.7962 -2.5172 2.2163 29 1 0.3214 -1.9081 1.4274 30 1 -0.0224 -5.4600 0.7896 31 1 5.8757 -0.7297 -0.9700 32 1 7.1993 -1.0454 1.0778 33 1 6.0384 -1.1936 3.2712 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530867.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:26 Heat of formation + Delta-G solvation = 38.523480 kcal Electronic energy + Delta-G solvation = -17329.789882 eV Core-core repulsion = 14609.744484 eV Total energy + Delta-G solvation = -2720.045398 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.09030 -37.05356 -35.95647 -32.78395 -31.87778 -31.57901 -29.28949 -26.85380 -25.85920 -23.36935 -22.79664 -21.74956 -19.27247 -17.10823 -16.20811 -16.11536 -15.46868 -15.17194 -14.33365 -14.01435 -13.79008 -13.11311 -12.92148 -12.44593 -12.08541 -11.82805 -11.64157 -11.43665 -11.31928 -11.09860 -10.99601 -10.66635 -10.47577 -10.36960 -10.07734 -9.89387 -9.74446 -9.28425 -8.95232 -8.45327 -8.42379 -7.32944 -6.05912 -4.12548 1.49622 1.65595 2.69347 3.26268 3.34594 3.40072 4.12742 4.40984 4.52766 5.01541 5.13014 5.27505 5.38678 5.55354 5.75683 5.78939 5.85331 6.11872 6.22448 6.30636 6.36767 6.46047 6.52743 6.59650 6.80016 7.05996 7.09432 7.23139 7.49074 7.74029 7.91043 8.14414 8.22554 8.52881 8.97941 9.53709 11.00548 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.009430 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.270753 B = 2968.628572 C = 3146.920118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.090 3.910 3 C -0.141 4.141 4 N -0.482 5.482 5 C 0.190 3.810 6 C -0.548 4.548 7 H 0.070 0.930 8 C 0.067 3.933 9 N -0.890 5.890 10 Si 0.888 3.112 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.283 1.283 14 C 0.367 3.633 15 N -0.495 5.495 16 C 0.118 3.882 17 C -0.206 4.206 18 C -0.059 4.059 19 C -0.093 4.093 20 Cl -0.054 7.054 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.052 0.948 30 H 0.262 0.738 31 H 0.151 0.849 32 H 0.132 0.868 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.782 8.435 1.262 11.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.017 4.017 3 C -0.199 4.199 4 N -0.201 5.201 5 C 0.068 3.932 6 C -0.587 4.587 7 H 0.088 0.912 8 C -0.136 4.136 9 N -0.529 5.529 10 Si 0.716 3.284 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.209 1.209 14 C 0.135 3.865 15 N -0.209 5.209 16 C -0.041 4.041 17 C -0.227 4.227 18 C -0.086 4.086 19 C -0.124 4.124 20 Cl -0.026 7.026 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.168 0.832 32 H 0.150 0.850 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.875 8.657 1.096 11.109 hybrid contribution 0.872 -1.364 -0.533 1.704 sum 7.747 7.293 0.564 10.654 Atomic orbital electron populations 1.21855 0.94856 1.02963 1.00354 1.21338 0.94713 0.92844 0.92819 1.21860 1.00820 0.96549 1.00679 1.60300 0.99635 1.22603 1.37589 1.20004 0.95759 0.80043 0.97398 1.21894 1.29405 1.01078 1.06335 0.91167 1.24911 0.94828 0.97593 0.96254 1.69958 1.31452 1.17936 1.33513 0.86585 0.78235 0.80226 0.83340 1.19681 1.21090 1.20914 1.19741 0.91927 0.88453 0.86422 1.68046 1.09837 1.15918 1.27101 1.22578 0.89495 0.93870 0.98183 1.21806 1.00976 1.07063 0.92850 1.21281 0.92012 0.96365 0.98935 1.21465 0.92562 1.10226 0.88168 1.98335 1.77412 1.96584 1.30240 0.93090 0.93485 0.90750 0.91015 0.93133 0.93051 0.93147 0.94299 0.93044 0.92865 0.83205 0.85031 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.46 37.16 0.31 -2.38 16 2 C 0.09 1.81 1.84 -67.71 -0.12 1.69 16 3 C -0.14 -2.41 9.01 37.16 0.33 -2.08 16 4 N -0.48 -10.47 4.09 -166.95 -0.68 -11.15 16 5 C 0.19 4.80 4.33 -4.97 -0.02 4.78 16 6 C -0.55 -14.89 7.56 -34.44 -0.26 -15.15 16 7 H 0.07 1.95 5.84 -52.49 -0.31 1.64 16 8 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 9 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 10 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.37 7.61 4.40 -154.94 -0.68 6.92 16 15 N -0.50 -9.80 6.86 -12.40 -0.09 -9.89 16 16 C 0.12 1.88 11.17 -17.56 -0.20 1.69 16 17 C -0.21 -2.90 10.10 -39.42 -0.40 -3.30 16 18 C -0.06 -0.92 9.97 -39.29 -0.39 -1.31 16 19 C -0.09 -1.75 6.19 -39.16 -0.24 -1.99 16 20 Cl -0.05 -0.99 27.14 -51.86 -1.41 -2.40 16 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 1.60 6.49 -51.93 -0.34 1.27 16 24 H 0.07 1.61 6.08 -51.93 -0.32 1.29 16 25 H 0.05 0.88 6.60 -51.93 -0.34 0.54 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.04 1.05 6.77 -51.93 -0.35 0.70 16 29 H 0.05 1.37 6.40 -51.93 -0.33 1.04 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.15 1.91 8.06 -52.49 -0.42 1.48 16 32 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 283.95 15.07 4.28 4.28 Total: -1.00 -29.43 283.95 -8.03 -37.45 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.08 Total: -0.50 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -1.76 Total: -9.36 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.03 Total: -46.09 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.41 Total: -2.40 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.43 -8.03 -37.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530867.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.977 kcal (2) G-P(sol) polarization free energy of solvation -29.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds