Wall clock time and date at job start Mon Mar 30 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47380 * 2 1 4 4 N 1.46910 * 109.46722 * 119.99366 * 2 1 3 5 5 C 1.46897 * 111.00023 * 52.14672 * 4 2 1 6 6 C 1.50709 * 109.47124 * 58.88777 * 5 4 2 7 7 H 1.08000 * 119.99316 * 4.37248 * 6 5 4 8 8 C 1.37870 * 120.00235 * 184.36115 * 6 5 4 9 9 N 1.31513 * 119.99693 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00187 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47049 * 0.02562 * 10 8 6 12 12 H 1.48491 * 109.47002 * 120.00418 * 10 8 6 13 13 H 1.48501 * 109.47076 * 240.00422 * 10 8 6 14 14 C 1.39068 * 110.99551 * 176.10203 * 4 2 1 15 15 N 1.32391 * 119.71316 * 337.44642 * 14 4 2 16 16 C 1.31964 * 121.63472 * 180.02562 * 15 14 4 17 17 C 1.38050 * 120.87815 * 359.97438 * 16 15 14 18 18 C 1.38853 * 119.33580 * 0.02562 * 17 16 15 19 19 C 1.38416 * 118.49565 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.46119 * 179.97438 * 19 18 17 21 21 H 1.09007 * 109.47515 * 294.07303 * 1 2 3 22 22 H 1.09003 * 109.46741 * 54.07328 * 1 2 3 23 23 H 1.09001 * 109.47663 * 174.07095 * 1 2 3 24 24 H 1.08993 * 109.47488 * 239.99312 * 2 1 3 25 25 H 1.08991 * 109.47240 * 183.86425 * 3 2 1 26 26 H 1.08998 * 109.46482 * 303.86601 * 3 2 1 27 27 H 1.08999 * 109.46973 * 63.86044 * 3 2 1 28 28 H 1.08992 * 109.47434 * 178.88920 * 5 4 2 29 29 H 1.09003 * 109.46978 * 298.89543 * 5 4 2 30 30 H 0.97006 * 119.99489 * 179.97438 * 9 8 6 31 31 H 1.07998 * 119.56202 * 180.02562 * 16 15 14 32 32 H 1.07993 * 120.33364 * 179.74699 * 17 16 15 33 33 H 1.08000 * 120.75044 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 1.4016 -2.0186 1.3311 6 6 1.7152 -2.8424 0.1087 7 1 2.3714 -2.4491 -0.6536 8 6 1.1646 -4.0980 -0.0364 9 7 0.3653 -4.5767 0.8919 10 14 1.5539 -5.1194 -1.5512 11 1 2.4717 -4.3598 -2.4378 12 1 2.2034 -6.3893 -1.1384 13 1 0.2965 -5.4210 -2.2814 14 6 3.4069 -0.7879 1.1885 15 7 4.0608 -0.7109 0.0399 16 6 5.3765 -0.7973 -0.0147 17 6 6.1233 -0.9718 1.1331 18 6 5.4767 -1.0576 2.3589 19 6 4.0959 -0.9647 2.3851 20 17 3.2354 -1.0660 3.8894 21 1 -0.3634 0.4192 0.9383 22 1 -0.3633 0.6030 -0.8322 23 1 -0.3634 -1.0221 -0.1062 24 1 1.8933 -0.5139 -0.8898 25 1 3.1277 1.4433 -0.0693 26 1 1.6212 1.9759 -0.8533 27 1 1.7343 1.9360 0.9226 28 1 1.7962 -2.5172 2.2163 29 1 0.3214 -1.9081 1.4274 30 1 -0.0224 -5.4600 0.7896 31 1 5.8757 -0.7297 -0.9700 32 1 7.1993 -1.0454 1.0778 33 1 6.0384 -1.1936 3.2712 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530867.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:26 Heat of formation + Delta-G solvation = 21.337882 kcal Electronic energy + Delta-G solvation = -17330.535106 eV Core-core repulsion = 14609.744484 eV Total energy + Delta-G solvation = -2720.790622 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.50130 -38.58577 -37.34912 -34.82284 -33.26325 -33.04379 -30.87629 -28.45713 -27.60346 -24.85678 -24.40820 -23.26239 -20.84964 -18.81493 -17.84375 -17.56802 -16.97758 -16.88979 -16.01037 -15.44447 -15.38227 -14.68353 -14.28312 -14.17880 -13.51473 -13.37149 -13.12346 -13.06867 -12.89096 -12.76437 -12.70575 -12.33362 -12.18148 -12.07576 -11.79187 -11.60381 -11.54966 -10.65629 -10.57817 -10.32833 -9.94842 -8.94176 -8.15743 -6.30690 0.17056 0.36504 1.31663 1.32771 1.35058 1.46635 2.37064 2.75231 3.09493 3.12581 3.74311 3.98573 4.13438 4.22774 4.31203 4.39881 4.57695 4.66407 4.86804 4.95278 5.02223 5.05542 5.13980 5.15854 5.24319 5.40817 5.47805 5.50161 5.65115 5.78702 5.98716 6.16639 6.58065 6.85812 7.15387 7.38864 8.88439 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.009430 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.270753 B = 2968.628572 C = 3146.920118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.090 3.910 3 C -0.127 4.127 4 N -0.484 5.484 5 C 0.210 3.790 6 C -0.546 4.546 7 H 0.063 0.937 8 C 0.017 3.983 9 N -0.923 5.923 10 Si 0.949 3.051 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.277 1.277 14 C 0.331 3.669 15 N -0.521 5.521 16 C 0.104 3.896 17 C -0.181 4.181 18 C -0.059 4.059 19 C -0.114 4.114 20 Cl -0.061 7.061 21 H 0.054 0.946 22 H 0.074 0.926 23 H 0.038 0.962 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.015 0.985 29 H 0.027 0.973 30 H 0.263 0.737 31 H 0.183 0.817 32 H 0.180 0.820 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.050 9.105 0.398 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.018 4.018 3 C -0.184 4.184 4 N -0.204 5.204 5 C 0.086 3.914 6 C -0.586 4.586 7 H 0.081 0.919 8 C -0.183 4.183 9 N -0.563 5.563 10 Si 0.775 3.225 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.203 1.203 14 C 0.100 3.900 15 N -0.235 5.235 16 C -0.055 4.055 17 C -0.201 4.201 18 C -0.085 4.085 19 C -0.145 4.145 20 Cl -0.033 7.033 21 H 0.074 0.926 22 H 0.093 0.907 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.200 0.800 32 H 0.198 0.802 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 9.163 9.347 0.230 13.091 hybrid contribution 0.319 -1.527 -0.272 1.584 sum 9.482 7.819 -0.042 12.291 Atomic orbital electron populations 1.21773 0.94431 1.01281 1.01753 1.21368 0.95071 0.94218 0.91113 1.21720 1.00443 0.94453 1.01828 1.60209 1.00934 1.20632 1.38579 1.19528 0.94336 0.81946 0.95626 1.22051 1.28639 1.01300 1.06560 0.91930 1.25666 0.94871 0.98823 0.98908 1.70065 1.32607 1.18397 1.35267 0.85630 0.78144 0.78604 0.80083 1.19515 1.20692 1.20255 1.19775 0.91373 0.91263 0.87565 1.67966 1.11905 1.16555 1.27076 1.23264 0.88498 0.93154 1.00537 1.22331 1.03158 1.03316 0.91308 1.21755 0.90728 0.95023 1.01025 1.21762 0.94044 1.11203 0.87541 1.98323 1.77906 1.96690 1.30373 0.92649 0.90669 0.94260 0.93817 0.93636 0.90739 0.92823 0.96711 0.95497 0.92756 0.79997 0.80250 0.81528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.46 71.98 0.61 -4.56 16 2 C 0.09 3.64 1.84 44.91 0.08 3.72 16 3 C -0.13 -4.19 9.01 71.98 0.65 -3.54 16 4 N -0.48 -21.50 4.09 -682.10 -2.79 -24.29 16 5 C 0.21 11.01 4.33 85.56 0.37 11.38 16 6 C -0.55 -30.44 7.56 25.60 0.19 -30.25 16 7 H 0.06 3.54 5.84 -2.91 -0.02 3.52 16 8 C 0.02 0.94 5.46 84.65 0.46 1.40 16 9 N -0.92 -54.85 13.29 21.44 0.28 -54.57 16 10 Si 0.95 44.84 29.54 68.60 2.03 46.86 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 14 C 0.33 13.70 4.40 133.06 0.58 14.28 16 15 N -0.52 -20.12 6.86 -193.15 -1.32 -21.44 16 16 C 0.10 3.02 11.17 84.63 0.95 3.97 16 17 C -0.18 -4.34 10.10 22.37 0.23 -4.11 16 18 C -0.06 -1.65 9.97 22.46 0.22 -1.43 16 19 C -0.11 -4.22 6.19 22.55 0.14 -4.08 16 20 Cl -0.06 -2.26 27.14 -2.72 -0.07 -2.33 16 21 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 22 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 23 H 0.04 1.75 6.49 -2.39 -0.02 1.74 16 24 H 0.04 2.00 6.08 -2.39 -0.01 1.99 16 25 H 0.04 1.54 6.60 -2.39 -0.02 1.52 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.01 0.84 6.77 -2.39 -0.02 0.82 16 29 H 0.03 1.52 6.40 -2.39 -0.02 1.51 16 30 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 31 H 0.18 3.94 8.06 -2.91 -0.02 3.91 16 32 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -65.63 283.95 3.72 -61.91 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.11 Total: 7.07 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.49 Total: -13.21 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -3.83 Total: -100.30 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.07 Total: -2.33 kcal Total: -65.63 3.72 -61.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530867.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.251 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds