Wall clock time and date at job start Mon Mar 30 2020 06:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47312 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46948 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.46809 * 239.99811 * 8 6 4 12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 13 13 O 1.21266 * 119.99889 * 270.00355 * 12 2 1 14 14 C 1.47065 * 119.99876 * 90.00175 * 12 2 1 15 15 C 1.40891 * 119.78216 * 359.73027 * 14 12 2 16 16 C 1.35637 * 120.81850 * 179.70881 * 15 14 12 17 17 C 1.40768 * 120.06460 * 0.55861 * 16 15 14 18 18 C 1.40453 * 121.00388 * 179.72371 * 17 16 15 19 19 C 1.36171 * 119.73149 * 180.02562 * 18 17 16 20 20 C 1.39359 * 121.01416 * 359.97438 * 19 18 17 21 21 C 1.36098 * 120.94832 * 359.97438 * 20 19 18 22 22 C 1.40692 * 119.65954 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.77638 * 179.97438 * 14 12 2 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 28 28 H 1.08000 * 119.59183 * 359.97438 * 15 14 12 29 29 H 1.08006 * 119.96934 * 180.27700 * 16 15 14 30 30 H 1.07997 * 120.13220 * 0.04157 * 18 17 16 31 31 H 1.08003 * 119.48998 * 180.02562 * 19 18 17 32 32 H 1.07994 * 119.52372 * 180.02562 * 20 19 18 33 33 H 1.07996 * 120.16764 * 180.02562 * 21 20 19 34 34 H 1.08005 * 120.28911 * 359.97438 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1454 -2.2877 3.6038 10 1 3.1467 -0.1874 4.8165 11 1 1.1660 -1.5866 4.8160 12 6 2.0323 -0.7104 -1.2305 13 8 2.2343 -1.9058 -1.2004 14 6 2.2774 0.0459 -2.4677 15 6 2.0357 1.4336 -2.4991 16 6 2.2601 2.1527 -3.6270 17 6 2.7292 1.5127 -4.7897 18 6 2.9627 2.2371 -5.9702 19 6 3.4161 1.5916 -7.0801 20 6 3.6541 0.2186 -7.0653 21 6 3.4406 -0.5167 -5.9402 22 6 2.9723 0.1155 -4.7738 23 6 2.7406 -0.6131 -3.5983 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7090 1.1614 3.4844 28 1 1.6712 1.9316 -1.6128 29 1 2.0743 3.2166 -3.6345 30 1 2.7837 3.3018 -5.9973 31 1 3.5948 2.1526 -7.9856 32 1 4.0140 -0.2688 -7.9593 33 1 3.6296 -1.5800 -5.9427 34 1 2.9217 -1.6775 -3.5725 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048258986.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:07 Heat of formation + Delta-G solvation = -3.897114 kcal Electronic energy + Delta-G solvation = -17512.570500 eV Core-core repulsion = 14760.825706 eV Total energy + Delta-G solvation = -2751.744795 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.105 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.28747 -38.48633 -35.92478 -33.83147 -32.61949 -31.04855 -29.79455 -29.08940 -25.20162 -24.67490 -23.02638 -22.14473 -21.58484 -19.21848 -17.15666 -16.71676 -16.53844 -15.73438 -15.02689 -14.66287 -14.45960 -13.87686 -13.67895 -13.41871 -13.25738 -13.07547 -12.90489 -12.53838 -11.79418 -11.57506 -11.17446 -11.08909 -11.04973 -10.79647 -10.68528 -10.64341 -10.25340 -10.08550 -9.90142 -8.98691 -8.55836 -8.48718 -8.31581 -7.81293 -6.05839 -4.10536 0.48897 0.96342 2.05655 2.70167 3.29965 3.37725 3.44808 3.59675 4.30276 4.41244 4.62403 4.81285 4.82751 4.99063 5.16148 5.22940 5.26988 5.40496 5.43336 5.54615 5.81747 5.98496 6.02643 6.23263 6.28819 6.42864 6.46610 6.65464 6.67783 6.79317 6.86277 6.90228 6.98904 7.07856 7.48890 7.74761 7.98691 8.22575 8.61056 8.94094 9.54249 11.01047 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.042954 B = 0.004710 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.708603 B = 5943.797761 C = 6279.684630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.005 3.995 3 H 0.053 0.947 4 C -0.505 4.505 5 H 0.066 0.934 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.396 3.604 13 O -0.463 6.463 14 C -0.147 4.147 15 C -0.068 4.068 16 C -0.127 4.127 17 C -0.036 4.036 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.129 4.129 21 C -0.095 4.095 22 C -0.066 4.066 23 C -0.056 4.056 24 H 0.014 0.986 25 H 0.032 0.968 26 H 0.094 0.906 27 H 0.261 0.739 28 H 0.142 0.858 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.820 3.874 -16.566 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.014 4.014 3 H 0.071 0.929 4 C -0.544 4.544 5 H 0.084 0.916 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.274 3.726 13 O -0.338 6.338 14 C -0.148 4.148 15 C -0.086 4.086 16 C -0.145 4.145 17 C -0.036 4.036 18 C -0.129 4.129 19 C -0.134 4.134 20 C -0.147 4.147 21 C -0.113 4.113 22 C -0.066 4.066 23 C -0.074 4.074 24 H 0.033 0.967 25 H 0.051 0.949 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.159 0.841 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.848 3.350 -16.404 16.983 hybrid contribution 0.294 -0.279 0.790 0.888 sum 3.142 3.071 -15.613 16.220 Atomic orbital electron populations 1.21671 0.95868 1.00056 1.01068 1.19161 0.94477 0.97290 0.90440 0.92942 1.21105 1.31338 1.12502 0.89407 0.91556 1.24931 0.94991 0.94995 0.99059 1.69874 1.36860 1.22949 1.23493 0.86436 0.78697 0.79777 0.82594 1.19620 1.20966 1.20928 1.23417 0.72266 0.88434 0.88463 1.90360 1.40399 1.17531 1.85509 1.21121 1.01920 0.95209 0.96543 1.21324 0.95568 0.93017 0.98663 1.20946 1.01329 0.99915 0.92294 1.18231 0.98317 0.92702 0.94384 1.21037 0.99874 0.99673 0.92358 1.20847 0.99490 0.94714 0.98324 1.20788 1.01413 0.94273 0.98270 1.21114 0.98152 0.99869 0.92192 1.18083 1.01144 0.93044 0.94343 1.21701 0.94633 1.00100 0.90952 0.96703 0.94870 0.88697 0.92924 0.84053 0.85295 0.85616 0.86204 0.86158 0.85547 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.95 37.16 0.33 -2.71 16 2 C 0.01 0.13 2.05 -92.92 -0.19 -0.07 16 3 H 0.05 1.30 6.44 -51.93 -0.33 0.97 16 4 C -0.51 -14.19 8.32 -34.44 -0.29 -14.48 16 5 H 0.07 1.94 7.14 -52.49 -0.37 1.57 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.82 11.32 55.43 0.63 -24.20 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.40 9.08 6.16 -30.73 -0.19 8.89 16 13 O -0.46 -11.65 15.90 5.57 0.09 -11.56 16 14 C -0.15 -2.79 5.86 -105.10 -0.62 -3.40 16 15 C -0.07 -1.13 9.26 -39.51 -0.37 -1.50 16 16 C -0.13 -1.79 9.73 -39.56 -0.38 -2.17 16 17 C -0.04 -0.51 5.75 -106.74 -0.61 -1.12 16 18 C -0.11 -1.26 9.75 -39.49 -0.39 -1.65 16 19 C -0.12 -1.18 9.95 -39.91 -0.40 -1.57 16 20 C -0.13 -1.36 9.95 -39.93 -0.40 -1.75 16 21 C -0.10 -1.17 9.77 -39.42 -0.39 -1.56 16 22 C -0.07 -0.99 5.74 -106.85 -0.61 -1.60 16 23 C -0.06 -0.94 9.34 -38.62 -0.36 -1.31 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.14 2.35 6.30 -52.49 -0.33 2.02 16 29 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 30 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.14 2.23 7.61 -52.48 -0.40 1.83 16 LS Contribution 292.40 15.07 4.41 4.41 Total: -1.00 -30.46 292.40 -8.69 -39.15 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -3.85 Total: 0.07 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -4.95 Total: -24.41 kcal Atomic # 7 Polarization: -24.82 SS G_CDS: 0.63 Total: -24.20 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.46 -8.69 -39.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048258986.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.257 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds