Wall clock time and date at job start Mon Mar 30 2020 06:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30918 * 1 3 3 Si 1.86802 * 119.99654 * 2 1 4 4 H 1.48500 * 109.46805 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46879 * 299.99657 * 3 2 1 6 6 H 1.48495 * 109.47289 * 59.99904 * 3 2 1 7 7 C 1.39843 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00202 * 192.27724 * 7 2 1 9 9 C 1.41110 * 119.99867 * 12.27497 * 7 2 1 10 10 C 1.40904 * 120.15204 * 207.72065 * 9 7 2 11 11 C 1.36311 * 119.84147 * 180.02562 * 10 9 7 12 12 C 1.39607 * 120.15317 * 0.02562 * 11 10 9 13 13 N 1.38823 * 119.84120 * 179.97438 * 12 11 10 14 14 C 1.39593 * 119.99565 * 154.65945 * 13 12 11 15 15 C 1.39050 * 120.04382 * 328.29327 * 14 13 12 16 16 C 1.38112 * 120.06420 * 179.97438 * 15 14 13 17 17 C 1.38188 * 120.15663 * 359.97438 * 16 15 14 18 18 C 1.38969 * 120.08278 * 0.02562 * 17 16 15 19 19 N 1.39677 * 120.03185 * 179.97438 * 18 17 16 20 20 C 1.38770 * 119.93090 * 359.70374 * 18 17 16 21 21 C 1.39601 * 120.31374 * 0.25493 * 12 11 10 22 22 C 1.36313 * 120.15654 * 359.47985 * 21 12 11 23 23 H 0.96997 * 120.00185 * 0.02562 * 1 2 3 24 24 H 1.08006 * 120.07931 * 0.02562 * 10 9 7 25 25 H 1.07994 * 119.92536 * 179.97438 * 11 10 9 26 26 H 0.96998 * 119.99733 * 334.38626 * 13 12 11 27 27 H 1.08004 * 119.96655 * 359.97438 * 15 14 13 28 28 H 1.07998 * 119.91735 * 180.02562 * 16 15 14 29 29 H 1.08006 * 119.96006 * 179.97438 * 17 16 15 30 30 H 0.96996 * 119.99843 * 0.02562 * 19 18 17 31 31 H 0.96996 * 119.99763 * 179.97438 * 19 18 17 32 32 H 1.08005 * 120.07562 * 180.32040 * 20 18 17 33 33 H 1.07997 * 119.92029 * 179.71899 * 21 12 11 34 34 H 1.07998 * 120.07838 * 180.27401 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7031 1.3465 0.0006 5 1 1.8843 2.3964 -1.2126 6 1 1.8843 2.3965 1.2124 7 6 2.0084 -1.2111 0.0005 8 1 3.0699 -1.2217 0.1994 9 6 1.3271 -2.4193 -0.2587 10 6 1.8043 -3.6306 0.2799 11 6 1.1415 -4.7941 0.0250 12 6 -0.0074 -4.7874 -0.7682 13 7 -0.6771 -5.9762 -1.0241 14 6 -2.0387 -5.9580 -1.3311 15 6 -2.8633 -4.9825 -0.7815 16 6 -4.2104 -4.9638 -1.0853 17 6 -4.7434 -5.9132 -1.9364 18 6 -3.9250 -6.8909 -2.4892 19 7 -4.4650 -7.8503 -3.3488 20 6 -2.5699 -6.9097 -2.1907 21 6 -0.4826 -3.5918 -1.3099 22 6 0.1672 -2.4201 -1.0587 23 1 -0.4850 0.8400 -0.0004 24 1 2.6933 -3.6373 0.8934 25 1 1.5063 -5.7234 0.4368 26 1 -0.1979 -6.8190 -0.9935 27 1 -2.4499 -4.2388 -0.1163 28 1 -4.8486 -4.2049 -0.6575 29 1 -5.7974 -5.8958 -2.1715 30 1 -5.4114 -7.8341 -3.5605 31 1 -3.8933 -8.5323 -3.7347 32 1 -1.9309 -7.6654 -2.6232 33 1 -1.3694 -3.5946 -1.9263 34 1 -0.2040 -1.4953 -1.4749 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:48 Heat of formation + Delta-G solvation = 46.360622 kcal Electronic energy + Delta-G solvation = -17388.942036 eV Core-core repulsion = 14671.669331 eV Total energy + Delta-G solvation = -2717.272705 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.38726 -37.72864 -35.45676 -33.72272 -32.85831 -29.97569 -29.60796 -28.28386 -27.61949 -24.63867 -22.37348 -21.56982 -20.87815 -20.01112 -17.33044 -17.06357 -16.83699 -15.96126 -15.55737 -15.06139 -14.51424 -13.94832 -13.71337 -13.21711 -13.06363 -12.89538 -12.58579 -12.05525 -11.82129 -11.67546 -11.26018 -11.06171 -10.90100 -10.81968 -10.63031 -10.37408 -9.81172 -9.69778 -9.31434 -9.02651 -7.96942 -7.56764 -7.25738 -6.69104 -6.42764 -4.20365 1.89065 2.08206 2.83545 3.05229 3.11127 3.16093 3.24481 3.91892 3.98412 4.29925 4.36253 4.71671 5.32667 5.54299 5.70981 5.86203 6.02290 6.08076 6.14427 6.20971 6.32034 6.63534 6.84851 6.87889 6.95976 7.08989 7.11714 7.18891 7.28012 7.51828 7.61543 7.71598 7.82246 7.89934 8.06649 8.21856 8.40068 8.54582 8.67881 8.94257 9.02122 10.27967 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.004712 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.523203 B = 5940.873084 C = 6502.402582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.092 3.908 10 C -0.200 4.200 11 C -0.128 4.128 12 C 0.040 3.960 13 N -0.678 5.678 14 C 0.249 3.751 15 C -0.215 4.215 16 C -0.043 4.043 17 C -0.251 4.251 18 C 0.239 3.761 19 N -0.884 5.884 20 C -0.265 4.265 21 C -0.129 4.129 22 C -0.135 4.135 23 H 0.278 0.722 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.394 0.606 27 H 0.127 0.873 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.394 0.606 31 H 0.393 0.607 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.498 -9.228 -3.951 11.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.090 3.910 10 C -0.221 4.221 11 C -0.149 4.149 12 C -0.055 4.055 13 N -0.298 5.298 14 C 0.145 3.855 15 C -0.238 4.238 16 C -0.063 4.063 17 C -0.275 4.275 18 C 0.135 3.865 19 N -0.423 5.423 20 C -0.292 4.292 21 C -0.149 4.149 22 C -0.155 4.155 23 H 0.089 0.911 24 H 0.113 0.887 25 H 0.107 0.893 26 H 0.228 0.772 27 H 0.145 0.855 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.221 0.779 31 H 0.220 0.780 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.635 -8.868 -3.875 11.734 hybrid contribution 0.357 0.165 -0.165 0.427 sum -6.277 -8.704 -4.041 11.467 Atomic orbital electron populations 1.69835 1.07341 1.28807 1.37002 1.25858 0.94803 1.01114 0.92572 0.86262 0.80803 0.81171 0.78451 1.18570 1.19851 1.20092 1.19499 0.96242 0.90705 1.42719 0.90625 1.17623 0.91877 0.92101 0.89440 1.20596 1.02759 0.92870 1.05836 1.19997 0.97326 0.97282 1.00275 1.17250 0.97162 0.85419 1.05624 1.41651 1.05561 1.07263 1.75337 1.17477 0.83764 0.93569 0.90642 1.20908 0.93180 1.03649 1.06104 1.20632 0.94455 0.96227 0.94967 1.20270 0.98788 1.00356 1.08067 1.17400 0.91635 0.88424 0.89025 1.42398 1.11759 1.34069 1.54108 1.20048 0.94070 1.07045 1.08011 1.20408 1.00653 0.92267 1.01606 1.21017 0.97982 0.96366 1.00102 0.91102 0.88743 0.89295 0.77212 0.85500 0.86561 0.87284 0.77888 0.77968 0.86993 0.88477 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.89 10.84 55.54 0.60 -20.29 16 2 C 0.07 1.83 5.23 -17.34 -0.09 1.74 16 3 Si 0.91 18.84 29.58 -169.99 -5.03 13.81 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.46 -12.23 9.04 -37.89 -0.34 -12.58 16 8 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 9 C 0.09 2.45 5.56 -106.79 -0.59 1.85 16 10 C -0.20 -4.86 9.74 -39.27 -0.38 -5.24 16 11 C -0.13 -2.83 9.87 -39.76 -0.39 -3.22 16 12 C 0.04 0.87 6.06 -83.68 -0.51 0.36 16 13 N -0.68 -12.52 5.42 -8.32 -0.05 -12.56 16 14 C 0.25 4.46 5.89 -83.81 -0.49 3.96 16 15 C -0.22 -3.98 7.72 -39.33 -0.30 -4.28 16 16 C -0.04 -0.69 10.03 -39.65 -0.40 -1.09 16 17 C -0.25 -3.62 9.89 -39.33 -0.39 -4.01 16 18 C 0.24 3.38 6.75 -83.82 -0.57 2.81 16 19 N -0.88 -8.96 9.09 32.40 0.29 -8.67 16 20 C -0.26 -4.12 9.81 -39.17 -0.38 -4.50 16 21 C -0.13 -3.04 7.77 -39.77 -0.31 -3.35 16 22 C -0.13 -3.50 8.61 -39.27 -0.34 -3.84 16 23 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 24 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 25 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 26 H 0.39 6.25 8.88 -40.82 -0.36 5.89 16 27 H 0.13 2.63 6.56 -52.48 -0.34 2.29 16 28 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.39 3.17 8.84 -40.82 -0.36 2.81 16 31 H 0.39 3.31 8.84 -40.82 -0.36 2.94 16 32 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 33 H 0.10 2.22 6.30 -52.49 -0.33 1.89 16 34 H 0.12 3.30 6.18 -52.49 -0.32 2.98 16 LS Contribution 290.28 15.07 4.37 4.37 Total: -1.00 -28.23 290.28 -9.04 -37.27 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -3.75 Total: 17.44 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: -5.49 Total: -31.38 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.85 Total: -41.51 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.23 -9.04 -37.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.626 kcal (2) G-P(sol) polarization free energy of solvation -28.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds