Wall clock time and date at job start Mon Mar 30 2020 06:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30918 * 1 3 3 Si 1.86802 * 119.99654 * 2 1 4 4 H 1.48500 * 109.46805 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46879 * 299.99657 * 3 2 1 6 6 H 1.48495 * 109.47289 * 59.99904 * 3 2 1 7 7 C 1.39843 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00202 * 192.27724 * 7 2 1 9 9 C 1.41110 * 119.99867 * 12.27497 * 7 2 1 10 10 C 1.40904 * 120.15204 * 207.72065 * 9 7 2 11 11 C 1.36311 * 119.84147 * 180.02562 * 10 9 7 12 12 C 1.39607 * 120.15317 * 0.02562 * 11 10 9 13 13 N 1.38823 * 119.84120 * 179.97438 * 12 11 10 14 14 C 1.39593 * 119.99565 * 154.65945 * 13 12 11 15 15 C 1.39050 * 120.04382 * 328.29327 * 14 13 12 16 16 C 1.38112 * 120.06420 * 179.97438 * 15 14 13 17 17 C 1.38188 * 120.15663 * 359.97438 * 16 15 14 18 18 C 1.38969 * 120.08278 * 0.02562 * 17 16 15 19 19 N 1.39677 * 120.03185 * 179.97438 * 18 17 16 20 20 C 1.38770 * 119.93090 * 359.70374 * 18 17 16 21 21 C 1.39601 * 120.31374 * 0.25493 * 12 11 10 22 22 C 1.36313 * 120.15654 * 359.47985 * 21 12 11 23 23 H 0.96997 * 120.00185 * 0.02562 * 1 2 3 24 24 H 1.08006 * 120.07931 * 0.02562 * 10 9 7 25 25 H 1.07994 * 119.92536 * 179.97438 * 11 10 9 26 26 H 0.96998 * 119.99733 * 334.38626 * 13 12 11 27 27 H 1.08004 * 119.96655 * 359.97438 * 15 14 13 28 28 H 1.07998 * 119.91735 * 180.02562 * 16 15 14 29 29 H 1.08006 * 119.96006 * 179.97438 * 17 16 15 30 30 H 0.96996 * 119.99843 * 0.02562 * 19 18 17 31 31 H 0.96996 * 119.99763 * 179.97438 * 19 18 17 32 32 H 1.08005 * 120.07562 * 180.32040 * 20 18 17 33 33 H 1.07997 * 119.92029 * 179.71899 * 21 12 11 34 34 H 1.07998 * 120.07838 * 180.27401 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7031 1.3465 0.0006 5 1 1.8843 2.3964 -1.2126 6 1 1.8843 2.3965 1.2124 7 6 2.0084 -1.2111 0.0005 8 1 3.0699 -1.2217 0.1994 9 6 1.3271 -2.4193 -0.2587 10 6 1.8043 -3.6306 0.2799 11 6 1.1415 -4.7941 0.0250 12 6 -0.0074 -4.7874 -0.7682 13 7 -0.6771 -5.9762 -1.0241 14 6 -2.0387 -5.9580 -1.3311 15 6 -2.8633 -4.9825 -0.7815 16 6 -4.2104 -4.9638 -1.0853 17 6 -4.7434 -5.9132 -1.9364 18 6 -3.9250 -6.8909 -2.4892 19 7 -4.4650 -7.8503 -3.3488 20 6 -2.5699 -6.9097 -2.1907 21 6 -0.4826 -3.5918 -1.3099 22 6 0.1672 -2.4201 -1.0587 23 1 -0.4850 0.8400 -0.0004 24 1 2.6933 -3.6373 0.8934 25 1 1.5063 -5.7234 0.4368 26 1 -0.1979 -6.8190 -0.9935 27 1 -2.4499 -4.2388 -0.1163 28 1 -4.8486 -4.2049 -0.6575 29 1 -5.7974 -5.8958 -2.1715 30 1 -5.4114 -7.8341 -3.5605 31 1 -3.8933 -8.5323 -3.7347 32 1 -1.9309 -7.6654 -2.6232 33 1 -1.3694 -3.5946 -1.9263 34 1 -0.2040 -1.4953 -1.4749 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:47 Heat of formation + Delta-G solvation = 29.963968 kcal Electronic energy + Delta-G solvation = -17389.653048 eV Core-core repulsion = 14671.669331 eV Total energy + Delta-G solvation = -2717.983717 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.79372 -39.34299 -36.97101 -35.21880 -34.35514 -31.56409 -31.43304 -29.78026 -28.95087 -26.44324 -23.76703 -23.09135 -22.56352 -21.60799 -19.21617 -18.38541 -18.18023 -17.32895 -16.84907 -16.77908 -15.85042 -15.67419 -15.13656 -14.70764 -14.55833 -14.31851 -14.11890 -13.76451 -13.61452 -13.39688 -12.82511 -12.67321 -12.44187 -12.29092 -12.15969 -11.81263 -11.57994 -11.39086 -11.10333 -10.64651 -9.50685 -9.43262 -8.56425 -8.47863 -8.01677 -6.14558 0.56745 0.78912 1.11231 1.17577 1.40604 1.55250 1.55858 2.25343 2.65132 2.80554 3.12706 3.19612 3.78150 4.13912 4.41451 4.42649 4.45385 4.55551 4.75887 4.79969 5.00268 5.03946 5.16892 5.23995 5.38354 5.44993 5.57595 5.64609 5.76446 5.81973 5.97357 5.99813 6.13814 6.34028 6.61612 6.69287 6.81485 7.00879 7.04815 7.12419 7.17996 8.43944 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.004712 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.523203 B = 5940.873084 C = 6502.402582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.030 3.970 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.499 4.499 8 H 0.074 0.926 9 C 0.057 3.943 10 C -0.208 4.208 11 C -0.132 4.132 12 C 0.062 3.938 13 N -0.675 5.675 14 C 0.228 3.772 15 C -0.245 4.245 16 C -0.048 4.048 17 C -0.246 4.246 18 C 0.245 3.755 19 N -0.865 5.865 20 C -0.264 4.264 21 C -0.135 4.135 22 C -0.154 4.154 23 H 0.284 0.716 24 H 0.104 0.896 25 H 0.124 0.876 26 H 0.408 0.592 27 H 0.092 0.908 28 H 0.130 0.870 29 H 0.139 0.861 30 H 0.408 0.592 31 H 0.405 0.595 32 H 0.132 0.868 33 H 0.099 0.901 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.545 -11.069 -4.880 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.529 4.529 8 H 0.092 0.908 9 C 0.054 3.946 10 C -0.228 4.228 11 C -0.153 4.153 12 C -0.034 4.034 13 N -0.299 5.299 14 C 0.126 3.874 15 C -0.269 4.269 16 C -0.067 4.067 17 C -0.270 4.270 18 C 0.138 3.862 19 N -0.405 5.405 20 C -0.291 4.291 21 C -0.156 4.156 22 C -0.174 4.174 23 H 0.094 0.906 24 H 0.122 0.878 25 H 0.141 0.859 26 H 0.245 0.755 27 H 0.110 0.890 28 H 0.148 0.852 29 H 0.156 0.844 30 H 0.238 0.762 31 H 0.234 0.766 32 H 0.150 0.850 33 H 0.117 0.883 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.730 -10.787 -4.838 14.126 hybrid contribution 0.457 0.472 0.042 0.658 sum -7.274 -10.315 -4.796 13.502 Atomic orbital electron populations 1.69912 1.08800 1.29955 1.38000 1.26699 0.95562 1.04346 0.91636 0.85156 0.79326 0.76452 0.78717 1.18177 1.19143 1.19291 1.19728 0.96387 0.91896 1.44933 0.90796 1.17932 0.92707 0.93281 0.90648 1.20819 1.03227 0.93005 1.05749 1.20297 0.97084 0.98002 0.99925 1.17313 0.96542 0.86143 1.03392 1.41501 1.06026 1.06542 1.75781 1.17641 0.83285 0.94583 0.91843 1.20780 0.94710 1.03991 1.07375 1.20836 0.93608 0.97060 0.95191 1.20603 1.00298 0.99377 1.06686 1.17513 0.91171 0.88734 0.88799 1.42355 1.12797 1.32930 1.52433 1.20230 0.95075 1.06602 1.07221 1.20427 1.00657 0.92499 1.01976 1.20910 0.98845 0.96443 1.01228 0.90568 0.87788 0.85856 0.75519 0.88956 0.85233 0.84363 0.76247 0.76573 0.85026 0.88304 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.62 10.84 21.81 0.24 -45.39 16 2 C 0.03 1.56 5.23 85.22 0.45 2.01 16 3 Si 0.98 39.59 29.58 68.60 2.03 41.62 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 7 C -0.50 -27.62 9.04 23.36 0.21 -27.41 16 8 H 0.07 3.94 7.87 -2.91 -0.02 3.91 16 9 C 0.06 3.15 5.56 -21.27 -0.12 3.03 16 10 C -0.21 -10.28 9.74 22.47 0.22 -10.06 16 11 C -0.13 -5.78 9.87 22.15 0.22 -5.56 16 12 C 0.06 2.72 6.06 38.69 0.23 2.95 16 13 N -0.68 -24.23 5.42 -180.24 -0.98 -25.21 16 14 C 0.23 7.93 5.89 38.24 0.23 8.16 16 15 C -0.25 -9.12 7.72 22.43 0.17 -8.95 16 16 C -0.05 -1.46 10.03 22.23 0.22 -1.24 16 17 C -0.25 -6.34 9.89 22.43 0.22 -6.11 16 18 C 0.24 6.04 6.75 38.19 0.26 6.30 16 19 N -0.86 -13.70 9.09 -51.42 -0.47 -14.17 16 20 C -0.26 -7.51 9.81 22.54 0.22 -7.29 16 21 C -0.13 -6.59 7.77 22.15 0.17 -6.42 16 22 C -0.15 -8.44 8.61 22.47 0.19 -8.25 16 23 H 0.28 14.01 8.30 -92.71 -0.77 13.24 16 24 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 25 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 26 H 0.41 12.12 8.88 -92.71 -0.82 11.30 16 27 H 0.09 4.03 6.56 -2.91 -0.02 4.01 16 28 H 0.13 3.51 8.06 -2.91 -0.02 3.48 16 29 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 30 H 0.41 4.64 8.84 -92.71 -0.82 3.82 16 31 H 0.40 4.98 8.84 -92.71 -0.82 4.16 16 32 H 0.13 3.17 8.06 -2.91 -0.02 3.14 16 33 H 0.10 4.71 6.30 -2.91 -0.02 4.69 16 34 H 0.10 5.88 6.18 -2.91 -0.02 5.86 16 Total: -1.00 -63.53 290.28 2.41 -61.12 By element: Atomic # 1 Polarization: 42.17 SS G_CDS: -1.31 Total: 40.87 kcal Atomic # 6 Polarization: -61.73 SS G_CDS: 2.90 Total: -58.84 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -1.21 Total: -84.76 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -63.53 2.41 -61.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.079 kcal (2) G-P(sol) polarization free energy of solvation -63.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds