Wall clock time and date at job start Mon Mar 30 2020 06:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47413 * 2 1 4 4 O 1.42901 * 109.47628 * 239.99590 * 2 1 3 5 5 C 1.50704 * 109.46960 * 119.99706 * 2 1 3 6 6 C 1.38180 * 120.00378 * 94.99891 * 5 2 1 7 7 C 1.38209 * 120.08200 * 179.97438 * 6 5 2 8 8 C 1.38512 * 120.08309 * 359.97438 * 7 6 5 9 9 F 1.35099 * 119.99575 * 180.02562 * 8 7 6 10 10 C 1.38345 * 120.00832 * 359.97438 * 8 7 6 11 11 C 1.38713 * 119.91932 * 0.02562 * 10 8 7 12 12 O 1.35891 * 120.04439 * 180.02562 * 11 10 8 13 13 C 1.42899 * 116.99973 * 359.97438 * 12 11 10 14 14 C 1.53001 * 109.47261 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47213 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00394 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00087 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99575 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00107 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46956 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47501 * 119.99545 * 19 17 15 22 22 H 1.48500 * 109.47007 * 239.99758 * 19 17 15 23 23 H 1.08998 * 109.47413 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47303 * 300.00777 * 1 2 3 25 25 H 1.09004 * 109.46563 * 60.00005 * 1 2 3 26 26 H 0.96703 * 114.00133 * 59.99853 * 4 2 1 27 27 H 1.07996 * 119.95609 * 359.97438 * 6 5 2 28 28 H 1.08000 * 119.95525 * 179.97438 * 7 6 5 29 29 H 1.08003 * 120.04109 * 179.75104 * 10 8 7 30 30 H 1.08994 * 109.47485 * 300.00226 * 13 12 11 31 31 H 1.08999 * 109.47051 * 60.00416 * 13 12 11 32 32 H 1.09005 * 109.47152 * 299.99991 * 14 13 12 33 33 H 1.09001 * 109.47508 * 60.00132 * 14 13 12 34 34 H 0.97009 * 119.99237 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2305 6 6 2.3609 -2.0511 1.1687 7 6 2.8222 -2.7040 2.2961 8 6 2.9568 -2.0160 3.4906 9 9 3.4084 -2.6558 4.5915 10 6 2.6298 -0.6733 3.5564 11 6 2.1668 -0.0178 2.4250 12 8 1.8454 1.3011 2.4866 13 6 2.0082 1.9503 3.7492 14 6 1.5991 3.4192 3.6239 15 6 1.7714 4.1040 4.9553 16 1 2.1366 3.5473 5.8057 17 6 1.4628 5.4412 5.0879 18 7 1.0185 6.1193 4.0523 19 14 1.6770 6.2902 6.7380 20 1 2.1878 5.3143 7.7340 21 1 2.6449 7.4076 6.5978 22 1 0.3682 6.8232 7.1940 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 1.7211 -0.2703 -1.9980 27 1 2.2571 -2.5894 0.2382 28 1 3.0781 -3.7521 2.2455 29 1 2.7307 -0.1373 4.4886 30 1 1.3799 1.4607 4.4932 31 1 3.0519 1.8885 4.0575 32 1 2.2271 3.9092 2.8798 33 1 0.5554 3.4808 3.3158 34 1 0.8017 7.0602 4.1455 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062749280.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:02 Heat of formation + Delta-G solvation = -127.166104 kcal Electronic energy + Delta-G solvation = -18334.783254 eV Core-core repulsion = 15146.923890 eV Total energy + Delta-G solvation = -3187.859364 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.83963 -40.10538 -37.65651 -36.54524 -33.45533 -31.95496 -30.63171 -29.83983 -28.53771 -25.22737 -23.76828 -22.66714 -21.29472 -20.49900 -18.30576 -17.42752 -16.49878 -16.09944 -15.92292 -15.73294 -15.34094 -15.20186 -14.62088 -14.45359 -14.12261 -13.77761 -13.23939 -12.64614 -12.49021 -12.38156 -12.35741 -11.74826 -11.40023 -11.36867 -11.03902 -10.92922 -10.77293 -10.60715 -10.12304 -9.94095 -9.74361 -9.35367 -8.73794 -8.50759 -7.99011 -6.16018 -4.20711 1.18079 1.41857 3.23542 3.30840 3.34260 3.61916 3.62950 4.13790 4.31621 4.37427 4.81292 4.97894 5.05393 5.20980 5.21240 5.31007 5.34599 5.65170 5.77783 5.88011 5.92737 5.94193 6.11164 6.13870 6.22146 6.32762 6.45760 6.56943 6.83006 7.39309 7.55223 7.62356 7.69668 7.90407 8.16816 8.84838 9.44227 10.95499 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.005148 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.268590 B = 5437.196744 C = 6569.871941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.153 3.847 3 H 0.074 0.926 4 O -0.569 6.569 5 C -0.137 4.137 6 C -0.030 4.030 7 C -0.207 4.207 8 C 0.138 3.862 9 F -0.141 7.141 10 C -0.251 4.251 11 C 0.181 3.819 12 O -0.307 6.307 13 C 0.061 3.939 14 C 0.026 3.974 15 C -0.527 4.527 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.379 0.621 27 H 0.141 0.859 28 H 0.132 0.868 29 H 0.145 0.855 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.841 -14.484 -7.290 16.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.095 3.905 3 H 0.092 0.908 4 O -0.375 6.375 5 C -0.138 4.138 6 C -0.049 4.049 7 C -0.226 4.226 8 C 0.119 3.881 9 F -0.119 7.119 10 C -0.270 4.270 11 C 0.133 3.867 12 O -0.219 6.219 13 C -0.013 4.013 14 C -0.011 4.011 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.527 5.527 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.227 0.773 27 H 0.159 0.841 28 H 0.150 0.850 29 H 0.162 0.838 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.991 -14.556 -6.981 16.174 hybrid contribution -0.011 0.772 1.027 1.285 sum 0.980 -13.784 -5.955 15.047 Atomic orbital electron populations 1.22436 0.95466 1.02462 1.03108 1.20268 0.92781 0.94786 0.82671 0.90795 1.86435 1.77285 1.57844 1.15946 1.18972 1.07862 0.94212 0.92741 1.20597 0.93923 0.92660 0.97673 1.20945 1.08580 1.01092 0.92027 1.17437 0.97407 0.90252 0.83036 1.91483 1.86516 1.81775 1.52140 1.21225 1.10610 0.94612 1.00573 1.18577 0.91389 0.84531 0.92174 1.86191 1.80069 1.17963 1.37696 1.23449 1.00177 0.96438 0.81196 1.19130 0.98057 0.85622 0.98250 1.20999 1.45307 0.94995 0.95264 0.92277 1.24982 0.94803 0.97323 0.96998 1.69982 1.43946 1.09079 1.29707 0.86429 0.77915 0.79537 0.83515 1.19610 1.20791 1.20801 0.92129 0.90774 0.92159 0.77348 0.84087 0.84978 0.83752 0.92798 0.92802 0.95331 0.95323 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 9.52 37.16 0.35 -1.75 16 2 C 0.15 2.03 3.52 -27.88 -0.10 1.93 16 3 H 0.07 1.07 7.69 -51.93 -0.40 0.67 16 4 O -0.57 -6.48 12.16 -35.23 -0.43 -6.91 16 5 C -0.14 -2.04 5.08 -104.46 -0.53 -2.57 16 6 C -0.03 -0.40 9.34 -39.61 -0.37 -0.77 16 7 C -0.21 -2.70 10.02 -39.49 -0.40 -3.09 16 8 C 0.14 2.05 7.30 -39.44 -0.29 1.76 16 9 F -0.14 -2.08 17.27 2.25 0.04 -2.05 16 10 C -0.25 -4.03 9.02 -39.37 -0.35 -4.39 16 11 C 0.18 3.05 6.66 -39.22 -0.26 2.79 16 12 O -0.31 -5.86 9.27 -19.40 -0.18 -6.04 16 13 C 0.06 1.26 4.68 37.16 0.17 1.43 16 14 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 15 C -0.53 -14.39 9.11 -34.44 -0.31 -14.70 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 19 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.38 2.64 9.08 45.56 0.41 3.06 16 27 H 0.14 1.62 7.35 -52.49 -0.39 1.23 16 28 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.14 2.29 6.30 -52.48 -0.33 1.96 16 30 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 31 H 0.05 1.06 7.66 -51.93 -0.40 0.67 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 298.43 15.07 4.50 4.50 Total: -1.00 -29.81 298.43 -6.26 -36.07 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.57 Total: 0.87 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -2.33 Total: -17.24 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.74 Total: -25.17 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.61 Total: -12.95 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.81 -6.26 -36.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062749280.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.092 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds