Wall clock time and date at job start Mon Mar 30 2020 06:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.48019 * 2 1 4 4 O 1.42903 * 109.46982 * 120.00198 * 2 1 3 5 5 C 1.50700 * 109.47076 * 239.99398 * 2 1 3 6 6 C 1.38172 * 120.00852 * 265.25494 * 5 2 1 7 7 C 1.38208 * 120.08025 * 180.23406 * 6 5 2 8 8 C 1.38520 * 120.08636 * 359.78830 * 7 6 5 9 9 F 1.35093 * 119.99700 * 179.97438 * 8 7 6 10 10 C 1.38345 * 120.00341 * 359.96415 * 8 7 6 11 11 C 1.38708 * 119.91877 * 0.02562 * 10 8 7 12 12 O 1.35897 * 120.04095 * 179.97438 * 11 10 8 13 13 C 1.42905 * 117.00093 * 0.02562 * 12 11 10 14 14 C 1.52997 * 109.47264 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47242 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99967 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00542 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00563 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99513 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47173 * 90.00033 * 19 17 15 21 21 H 1.48502 * 109.46811 * 209.99659 * 19 17 15 22 22 H 1.48495 * 109.47087 * 329.99741 * 19 17 15 23 23 H 1.09006 * 109.46757 * 59.99604 * 1 2 3 24 24 H 1.08997 * 109.47497 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46957 * 300.00475 * 1 2 3 26 26 H 0.96700 * 114.00071 * 300.00020 * 4 2 1 27 27 H 1.07996 * 119.95888 * 0.02562 * 6 5 2 28 28 H 1.08000 * 119.95639 * 179.76959 * 7 6 5 29 29 H 1.07995 * 120.03757 * 180.02562 * 10 8 7 30 30 H 1.09001 * 109.47103 * 300.00408 * 13 12 11 31 31 H 1.09004 * 109.47054 * 59.99912 * 13 12 11 32 32 H 1.09001 * 109.46832 * 299.99892 * 14 13 12 33 33 H 1.08992 * 109.47303 * 59.99596 * 14 13 12 34 34 H 0.96999 * 120.00061 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.0323 -0.7105 -1.2304 6 6 2.3559 -2.0524 -1.1697 7 6 2.8213 -2.7044 -2.2960 8 6 2.9603 -2.0153 -3.4896 9 9 3.4159 -2.6542 -4.5892 10 6 2.6325 -0.6729 -3.5556 11 6 2.1651 -0.0185 -2.4254 12 8 1.8428 1.3003 -2.4873 13 6 2.0093 1.9503 -3.7490 14 6 1.5997 3.4191 -3.6240 15 6 1.7747 4.1045 -4.9546 16 1 2.1418 3.5481 -5.8045 17 6 1.4662 5.4417 -5.0873 18 7 1.6194 6.0399 -6.2485 19 14 0.8306 6.4038 -3.6176 20 1 1.9759 6.9963 -2.8810 21 1 -0.0697 7.4874 -4.0872 22 1 0.0805 5.4927 -2.7164 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7209 -0.2702 1.9980 27 1 2.2483 -2.5917 -0.2402 28 1 3.0772 -3.7524 -2.2454 29 1 2.7402 -0.1352 -4.4859 30 1 3.0540 1.8895 -4.0540 31 1 1.3838 1.4606 -4.4954 32 1 0.5551 3.4803 -3.3188 33 1 2.2254 3.9086 -2.8778 34 1 1.4027 6.9808 -6.3417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062749281.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:04 Heat of formation + Delta-G solvation = -143.243791 kcal Electronic energy + Delta-G solvation = -18392.514588 eV Core-core repulsion = 15203.958043 eV Total energy + Delta-G solvation = -3188.556545 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.00394 -41.38382 -38.90741 -37.62652 -35.43502 -33.21872 -32.57767 -31.23232 -29.71468 -27.22561 -24.86141 -23.94032 -22.64431 -21.78658 -19.76850 -18.82775 -18.44752 -17.28728 -17.24249 -17.01095 -16.68390 -16.55328 -16.24707 -15.54703 -15.34315 -15.16335 -14.64570 -14.40961 -14.15086 -13.81745 -13.44980 -13.13947 -13.00246 -12.72000 -12.49929 -12.38747 -12.20791 -11.89257 -11.75659 -11.59504 -11.47505 -11.06987 -10.82651 -9.90860 -9.22744 -8.35738 -6.43328 0.01887 0.23704 1.36322 1.37675 1.49975 2.14435 2.32566 2.47573 2.99537 3.10281 3.23410 3.70239 3.90948 3.98915 4.05491 4.16930 4.20323 4.24212 4.34408 4.57375 4.62727 4.76432 4.92156 4.98515 5.05300 5.06502 5.20801 5.27893 5.28242 5.37009 5.49493 5.71793 6.14179 6.29547 6.62978 6.92232 7.22062 8.80150 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.005629 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.583694 B = 4973.468670 C = 6160.048381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.157 3.843 3 H 0.059 0.941 4 O -0.571 6.571 5 C -0.139 4.139 6 C -0.026 4.026 7 C -0.188 4.188 8 C 0.125 3.875 9 F -0.143 7.143 10 C -0.261 4.261 11 C 0.154 3.846 12 O -0.317 6.317 13 C 0.083 3.917 14 C -0.003 4.003 15 C -0.540 4.540 16 H 0.039 0.961 17 C 0.013 3.987 18 N -0.944 5.944 19 Si 0.950 3.050 20 H -0.265 1.265 21 H -0.281 1.281 22 H -0.245 1.245 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.400 0.600 27 H 0.166 0.834 28 H 0.164 0.836 29 H 0.136 0.864 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.074 -15.891 15.522 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.098 3.902 3 H 0.077 0.923 4 O -0.381 6.381 5 C -0.140 4.140 6 C -0.043 4.043 7 C -0.207 4.207 8 C 0.106 3.894 9 F -0.122 7.122 10 C -0.281 4.281 11 C 0.108 3.892 12 O -0.230 6.230 13 C 0.008 3.992 14 C -0.041 4.041 15 C -0.578 4.578 16 H 0.057 0.943 17 C -0.185 4.185 18 N -0.583 5.583 19 Si 0.772 3.228 20 H -0.189 1.189 21 H -0.206 1.206 22 H -0.169 1.169 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.101 0.899 26 H 0.250 0.750 27 H 0.184 0.816 28 H 0.181 0.819 29 H 0.154 0.846 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.883 -15.990 15.080 21.997 hybrid contribution -0.172 1.086 -0.474 1.198 sum -1.055 -14.904 14.606 20.894 Atomic orbital electron populations 1.22392 0.94391 1.03083 1.03130 1.20124 0.93455 0.93806 0.82829 0.92264 1.86390 1.77389 1.57836 1.16440 1.19301 1.07096 0.94970 0.92642 1.20897 0.92905 0.91949 0.98596 1.21323 1.06111 1.02410 0.90869 1.17590 0.98003 0.90004 0.83846 1.91480 1.86468 1.81684 1.52519 1.21265 1.10949 0.95530 1.00327 1.18713 0.93636 0.83506 0.93355 1.86066 1.81158 1.19621 1.36150 1.22767 1.00521 0.93564 0.82337 1.19420 0.97790 0.90551 0.96314 1.21121 1.45190 0.95708 0.95739 0.94283 1.25907 0.94871 0.98647 0.99079 1.70033 1.49790 1.12232 1.26289 0.85664 0.79264 0.78459 0.79369 1.18946 1.20637 1.16880 0.92851 0.91311 0.89945 0.74978 0.81611 0.81852 0.84650 0.92438 0.92269 0.94956 0.95203 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.39 9.52 71.98 0.68 -2.71 16 2 C 0.16 3.54 3.52 29.85 0.10 3.64 16 3 H 0.06 1.50 7.69 -2.39 -0.02 1.48 16 4 O -0.57 -10.33 12.16 -148.98 -1.81 -12.14 16 5 C -0.14 -3.70 5.08 -19.76 -0.10 -3.80 16 6 C -0.03 -0.57 9.34 22.25 0.21 -0.36 16 7 C -0.19 -4.20 10.02 22.33 0.22 -3.98 16 8 C 0.12 3.47 7.30 22.36 0.16 3.64 16 9 F -0.14 -4.07 17.27 44.97 0.78 -3.29 16 10 C -0.26 -8.18 9.02 22.41 0.20 -7.98 16 11 C 0.15 4.91 6.66 22.50 0.15 5.06 16 12 O -0.32 -11.36 9.27 -92.39 -0.86 -12.22 16 13 C 0.08 3.29 4.68 71.98 0.34 3.63 16 14 C 0.00 -0.15 4.41 29.85 0.13 -0.02 16 15 C -0.54 -30.51 9.66 25.60 0.25 -30.26 16 16 H 0.04 2.41 7.99 -2.91 -0.02 2.38 16 17 C 0.01 0.75 5.47 84.65 0.46 1.21 16 18 N -0.94 -58.02 13.96 21.45 0.30 -57.72 16 19 Si 0.95 43.03 27.47 68.60 1.88 44.92 16 20 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.25 -10.32 6.54 99.48 0.65 -9.67 16 23 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.40 3.60 9.08 -74.06 -0.67 2.93 16 27 H 0.17 2.91 7.35 -2.91 -0.02 2.89 16 28 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 29 H 0.14 4.41 6.30 -2.91 -0.02 4.39 16 30 H 0.06 2.28 7.66 -2.39 -0.02 2.26 16 31 H 0.06 2.33 7.66 -2.38 -0.02 2.31 16 32 H 0.03 1.47 7.20 -2.39 -0.02 1.45 16 33 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 34 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -65.73 294.84 3.49 -62.23 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.39 Total: 10.15 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 2.82 Total: -31.93 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.30 Total: -57.72 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -2.67 Total: -24.35 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.78 Total: -3.29 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.92 kcal Total: -65.73 3.49 -62.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062749281.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.009 kcal (2) G-P(sol) polarization free energy of solvation -65.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds