Wall clock time and date at job start Mon Mar 30 2020 06:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46848 * 2 1 4 4 C 1.50694 * 109.47535 * 119.99988 * 2 1 3 5 5 H 1.08004 * 120.00269 * 119.99562 * 4 2 1 6 6 C 1.37879 * 119.99887 * 300.00854 * 4 2 1 7 7 N 1.31510 * 120.00012 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00003 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47240 * 59.99535 * 8 6 4 10 10 H 1.48503 * 109.47431 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47258 * 299.99652 * 8 6 4 12 12 N 1.46904 * 109.47413 * 240.00257 * 2 1 3 13 13 C 1.46907 * 110.99822 * 61.54341 * 12 2 1 14 14 C 1.40072 * 111.00044 * 185.49461 * 12 2 1 15 15 C 1.38832 * 120.00819 * 303.54720 * 14 12 2 16 16 C 1.38102 * 120.01479 * 180.23104 * 15 14 12 17 17 C 1.38875 * 120.01825 * 359.48808 * 16 15 14 18 18 N 1.39996 * 119.99862 * 180.25942 * 17 16 15 19 19 C 1.38849 * 120.00466 * 0.23526 * 17 16 15 20 20 C 1.38191 * 119.98890 * 0.02562 * 19 17 16 21 21 Cl 1.73599 * 120.01029 * 179.97438 * 20 19 17 22 22 H 1.09004 * 109.46757 * 178.07985 * 1 2 3 23 23 H 1.08995 * 109.47216 * 298.08068 * 1 2 3 24 24 H 1.09002 * 109.47134 * 58.08478 * 1 2 3 25 25 H 0.97004 * 120.00101 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.46903 * 183.95473 * 13 12 2 27 27 H 1.09000 * 109.47034 * 303.95599 * 13 12 2 28 28 H 1.09003 * 109.46727 * 63.95633 * 13 12 2 29 29 H 1.08003 * 119.99327 * 359.97438 * 15 14 12 30 30 H 1.07998 * 119.99626 * 179.76667 * 16 15 14 31 31 H 0.96997 * 119.99776 * 359.97438 * 18 17 16 32 32 H 0.96995 * 119.99833 * 180.02562 * 18 17 16 33 33 H 1.07998 * 120.00341 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.8064 -1.1208 4.0081 10 1 1.8269 -0.4200 5.2204 11 1 1.8260 -2.5202 4.0076 12 7 2.0197 -0.6924 -1.1995 13 6 1.5791 -0.0052 -2.4208 14 6 3.4143 -0.8205 -1.1709 15 6 4.2127 0.3078 -1.0414 16 6 5.5878 0.1822 -1.0181 17 6 6.1723 -1.0740 -1.1134 18 7 7.5662 -1.2014 -1.0842 19 6 5.3745 -2.2035 -1.2371 20 6 3.9986 -2.0776 -1.2660 21 17 3.0005 -3.4895 -1.4213 22 1 -0.3633 -1.0271 -0.0344 23 1 -0.3633 0.4837 0.9066 24 1 -0.3633 0.5433 -0.8723 25 1 0.7093 1.1616 3.4844 26 1 1.8955 -0.5766 -3.2935 27 1 0.4925 0.0809 -2.4174 28 1 2.0224 0.9899 -2.4578 29 1 3.7584 1.2846 -0.9632 30 1 6.2087 1.0605 -0.9211 31 1 8.1236 -0.4123 -0.9978 32 1 7.9745 -2.0787 -1.1511 33 1 5.8291 -3.1804 -1.3108 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063086753.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:20 Heat of formation + Delta-G solvation = 11.176561 kcal Electronic energy + Delta-G solvation = -17065.635941 eV Core-core repulsion = 14344.404691 eV Total energy + Delta-G solvation = -2721.231249 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.75570 -38.28113 -37.16228 -35.14926 -34.06173 -31.53244 -30.96725 -29.03971 -27.06243 -25.74582 -23.90678 -22.72984 -21.09798 -18.50324 -18.22357 -17.69865 -17.23427 -16.42167 -15.69709 -15.51534 -15.25926 -14.91321 -14.58275 -14.25795 -13.71094 -13.68960 -13.51284 -12.91840 -12.70607 -12.61771 -12.44275 -12.33189 -12.27512 -12.14374 -11.79761 -11.49305 -10.95694 -10.82696 -10.48084 -9.59641 -9.00923 -8.23139 -8.05508 -6.13842 0.41655 0.66327 1.40701 1.42184 1.48529 1.49550 2.44831 2.87982 3.08399 3.23309 3.39991 4.02297 4.24164 4.50351 4.57236 4.66869 4.77341 4.86473 4.91854 5.02410 5.10044 5.15762 5.19930 5.31865 5.52199 5.65865 5.77633 5.81741 5.88521 6.32812 6.53792 6.63500 6.83274 7.03468 7.10631 7.53169 8.99569 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.009364 C = 0.008204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.540365 B = 2989.326579 C = 3412.038733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.225 3.775 3 H -0.026 1.026 4 C -0.498 4.498 5 H 0.050 0.950 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.944 3.056 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.275 1.275 12 N -0.505 5.505 13 C 0.033 3.967 14 C 0.064 3.936 15 C -0.097 4.097 16 C -0.187 4.187 17 C 0.216 3.784 18 N -0.864 5.864 19 C -0.196 4.196 20 C 0.014 3.986 21 Cl -0.070 7.070 22 H 0.029 0.971 23 H 0.062 0.938 24 H 0.032 0.968 25 H 0.260 0.740 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.019 0.981 29 H 0.110 0.890 30 H 0.142 0.858 31 H 0.408 0.592 32 H 0.408 0.592 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.886 -3.158 -8.885 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.120 3.880 3 H -0.009 1.009 4 C -0.536 4.536 5 H 0.068 0.932 6 C -0.183 4.183 7 N -0.560 5.560 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.201 1.201 12 N -0.227 5.227 13 C -0.114 4.114 14 C -0.033 4.033 15 C -0.118 4.118 16 C -0.211 4.211 17 C 0.111 3.889 18 N -0.405 5.405 19 C -0.220 4.220 20 C -0.014 4.014 21 Cl -0.041 7.041 22 H 0.048 0.952 23 H 0.081 0.919 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.037 0.963 29 H 0.128 0.872 30 H 0.159 0.841 31 H 0.238 0.762 32 H 0.237 0.763 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.451 -3.636 -8.766 14.116 hybrid contribution 0.462 0.452 1.090 1.267 sum 10.913 -3.184 -7.676 13.717 Atomic orbital electron populations 1.21671 0.97257 0.99062 1.00095 1.19083 0.92394 0.90260 0.86287 1.00895 1.21235 1.29965 1.11669 0.90767 0.93164 1.25516 0.95668 0.95799 1.01284 1.69981 1.38106 1.24137 1.23774 0.85814 0.78656 0.78910 0.79523 1.20125 1.20819 1.20070 1.59796 1.07013 1.52580 1.03286 1.22392 1.01151 0.95934 0.91944 1.18386 0.89689 0.91557 1.03651 1.21313 0.94339 0.98085 0.98025 1.20675 0.94168 0.96844 1.09379 1.17508 0.85544 0.92277 0.93595 1.42308 1.01394 1.12435 1.84383 1.20439 0.90585 0.99133 1.11801 1.20705 0.91065 0.86906 1.02773 1.98307 1.70807 1.39024 1.95959 0.95216 0.91929 0.94882 0.93116 0.91211 0.90953 0.96262 0.87190 0.84068 0.76162 0.76263 0.83605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.07 8.76 71.98 0.63 -5.44 16 2 C 0.23 11.50 1.70 44.17 0.07 11.57 16 3 H -0.03 -1.47 7.16 -2.39 -0.02 -1.49 16 4 C -0.50 -27.78 8.01 25.60 0.21 -27.58 16 5 H 0.05 2.89 7.00 -2.91 -0.02 2.87 16 6 C 0.02 0.87 5.30 84.66 0.45 1.32 16 7 N -0.92 -53.23 11.31 21.45 0.24 -52.99 16 8 Si 0.94 45.10 29.54 68.60 2.03 47.13 16 9 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 N -0.51 -22.14 4.01 -699.84 -2.80 -24.95 16 13 C 0.03 1.20 9.16 127.69 1.17 2.37 16 14 C 0.06 2.63 3.36 38.14 0.13 2.76 16 15 C -0.10 -3.70 8.63 22.38 0.19 -3.51 16 16 C -0.19 -5.82 9.89 22.39 0.22 -5.60 16 17 C 0.22 6.03 6.76 38.14 0.26 6.29 16 18 N -0.86 -15.68 9.10 -51.23 -0.47 -16.15 16 19 C -0.20 -6.07 9.67 22.40 0.22 -5.85 16 20 C 0.01 0.52 6.11 22.43 0.14 0.66 16 21 Cl -0.07 -2.58 28.43 -2.72 -0.08 -2.66 16 22 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 23 H 0.06 3.41 6.02 -2.39 -0.01 3.40 16 24 H 0.03 1.42 6.45 -2.39 -0.02 1.41 16 25 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 26 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.07 2.56 6.18 -2.39 -0.01 2.54 16 28 H 0.02 0.68 7.56 -2.39 -0.02 0.66 16 29 H 0.11 4.39 7.07 -2.91 -0.02 4.37 16 30 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.41 5.67 8.84 -92.71 -0.82 4.85 16 32 H 0.41 5.65 8.84 -92.71 -0.82 4.83 16 33 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -63.67 286.89 2.11 -61.56 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -0.50 Total: 11.06 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 3.68 Total: -23.01 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -3.03 Total: -94.08 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -0.08 Total: -2.66 kcal Total: -63.67 2.11 -61.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063086753.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.741 kcal (2) G-P(sol) polarization free energy of solvation -63.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds