Wall clock time and date at job start Mon Mar 30 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46633 * 2 1 4 4 C 1.50701 * 109.47256 * 240.00620 * 2 1 3 5 5 H 1.07999 * 119.99762 * 239.99803 * 4 2 1 6 6 C 1.37877 * 120.00211 * 59.99249 * 4 2 1 7 7 N 1.31515 * 119.99789 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00169 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47028 * 60.00119 * 8 6 4 10 10 H 1.48500 * 109.47159 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46931 * 300.00396 * 8 6 4 12 12 N 1.46898 * 109.47517 * 120.00033 * 2 1 3 13 13 C 1.46900 * 111.00176 * 299.55192 * 12 2 1 14 14 C 1.40085 * 111.00073 * 175.59482 * 12 2 1 15 15 C 1.38641 * 120.08309 * 60.99725 * 14 12 2 16 16 C 1.38270 * 120.01431 * 180.02562 * 15 14 12 17 17 C 1.38360 * 120.17593 * 0.27516 * 16 15 14 18 18 Cl 1.73602 * 119.91729 * 179.72198 * 17 16 15 19 19 C 1.38363 * 120.16520 * 359.44499 * 17 16 15 20 20 C 1.38660 * 119.98817 * 0.55473 * 19 17 16 21 21 N 1.40009 * 120.09066 * 179.69882 * 20 19 17 22 22 H 1.08997 * 109.47038 * 305.97431 * 1 2 3 23 23 H 1.08990 * 109.47176 * 65.97895 * 1 2 3 24 24 H 1.09003 * 109.46570 * 185.97423 * 1 2 3 25 25 H 0.97000 * 120.00155 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.46928 * 296.04292 * 13 12 2 27 27 H 1.09006 * 109.46984 * 56.04290 * 13 12 2 28 28 H 1.08995 * 109.47049 * 176.04429 * 13 12 2 29 29 H 1.08004 * 119.99671 * 0.03654 * 15 14 12 30 30 H 1.07993 * 119.91739 * 179.97438 * 16 15 14 31 31 H 1.07997 * 120.00591 * 180.29629 * 19 17 16 32 32 H 0.97001 * 119.99833 * 180.02562 * 21 20 19 33 33 H 0.96993 * 120.00209 * 0.02921 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5883 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1200 -4.0081 9 1 1.8259 -2.5200 -4.0079 10 1 1.8268 -0.4196 -5.2205 11 1 3.8064 -1.1205 -4.0083 12 7 2.0198 -0.6925 1.1994 13 6 1.5576 -0.0202 2.4211 14 6 3.4165 -0.7988 1.1826 15 6 4.2003 0.3447 1.1627 16 6 5.5788 0.2381 1.1455 17 6 6.1800 -1.0080 1.1425 18 17 7.9112 -1.1341 1.1137 19 6 5.4050 -2.1540 1.1681 20 6 4.0221 -2.0551 1.1853 21 7 3.2357 -3.2133 1.2049 22 1 -0.3633 0.6037 0.8317 23 1 -0.3633 0.4183 -0.9386 24 1 -0.3632 -1.0221 0.1070 25 1 0.7087 1.1615 -3.4843 26 1 1.9850 0.9814 2.4684 27 1 0.4698 0.0490 2.4083 28 1 1.8751 -0.5923 3.2928 29 1 3.7341 1.3189 1.1607 30 1 6.1878 1.1298 1.1296 31 1 5.8771 -3.1253 1.1705 32 1 2.2683 -3.1426 1.2166 33 1 3.6582 -4.0864 1.2069 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063086790.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:34 Heat of formation + Delta-G solvation = 26.720659 kcal Electronic energy + Delta-G solvation = -17067.574624 eV Core-core repulsion = 14347.017417 eV Total energy + Delta-G solvation = -2720.557207 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.44588 -36.70552 -35.72842 -33.76320 -32.81909 -29.84296 -28.70366 -27.81493 -25.54672 -24.24430 -22.28620 -21.14784 -19.43982 -16.98138 -16.60575 -16.30474 -15.43425 -14.79908 -14.24716 -13.96375 -13.85480 -13.35136 -13.10712 -12.92780 -12.25110 -11.92813 -11.81962 -11.44694 -11.29919 -11.00079 -10.72534 -10.67785 -10.57143 -10.34484 -10.29332 -9.96422 -9.80324 -8.97537 -8.45430 -8.08210 -7.47571 -6.90446 -6.02488 -4.06226 1.76190 2.08408 2.53222 3.32486 3.36304 3.40455 4.26126 4.39922 4.48551 4.84490 5.30487 5.39153 5.61679 5.88973 5.89435 6.04422 6.17956 6.26430 6.38043 6.40005 6.73138 6.78513 6.94621 6.98926 7.04272 7.19863 7.39565 7.68087 7.80770 7.94490 8.23996 8.31147 8.39570 8.54070 8.99933 9.58682 11.04035 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.018770 B = 0.008309 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.419891 B = 3368.933443 C = 4078.008964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.217 3.783 3 H 0.004 0.996 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.893 3.107 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.506 5.506 13 C 0.029 3.971 14 C 0.073 3.927 15 C -0.088 4.088 16 C -0.163 4.163 17 C 0.000 4.000 18 Cl -0.094 7.094 19 C -0.199 4.199 20 C 0.247 3.753 21 N -0.862 5.862 22 H 0.009 0.991 23 H 0.089 0.911 24 H 0.033 0.967 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.411 0.589 33 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.817 -3.865 8.596 11.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.112 3.888 3 H 0.021 0.979 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.228 5.228 13 C -0.118 4.118 14 C -0.025 4.025 15 C -0.109 4.109 16 C -0.185 4.185 17 C -0.027 4.027 18 Cl -0.066 7.066 19 C -0.224 4.224 20 C 0.140 3.860 21 N -0.401 5.401 22 H 0.028 0.972 23 H 0.108 0.892 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.242 0.758 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.644 -4.199 8.437 10.985 hybrid contribution 0.599 0.119 -1.060 1.223 sum 6.244 -4.081 7.377 10.491 Atomic orbital electron populations 1.21866 0.97513 0.98799 1.01126 1.19373 0.92200 0.92056 0.85136 0.97871 1.21054 1.30596 1.12402 0.89569 0.91931 1.24871 0.95194 0.95055 0.98919 1.69861 1.36973 1.22990 1.23529 0.86629 0.79321 0.79693 0.82236 1.20340 1.21383 1.20249 1.59843 1.05507 1.53708 1.03782 1.22376 1.00905 0.96162 0.92397 1.18244 0.89920 0.90658 1.03686 1.21281 0.92921 0.98883 0.97788 1.20526 0.94581 0.95402 1.07959 1.20380 0.82639 0.94694 1.04941 1.98314 1.12549 1.98574 1.97150 1.20126 0.91450 0.97418 1.13388 1.17380 0.89003 0.87049 0.92591 1.42377 1.09508 1.04174 1.84003 0.97223 0.89204 0.94794 0.92939 0.96262 0.91230 0.92966 0.85968 0.86237 0.85911 0.75825 0.78475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.64 37.16 0.32 -2.81 16 2 C 0.22 5.21 1.78 -68.86 -0.12 5.08 16 3 H 0.00 0.10 7.34 -51.93 -0.38 -0.28 16 4 C -0.50 -13.23 8.04 -34.44 -0.28 -13.51 16 5 H 0.06 1.69 6.87 -52.49 -0.36 1.33 16 6 C 0.06 1.65 5.29 -17.82 -0.09 1.56 16 7 N -0.89 -25.06 11.29 55.43 0.63 -24.44 16 8 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.51 -10.21 3.78 -172.45 -0.65 -10.87 16 13 C 0.03 0.50 9.10 60.06 0.55 1.05 16 14 C 0.07 1.45 3.50 -83.48 -0.29 1.15 16 15 C -0.09 -1.68 8.62 -39.42 -0.34 -2.02 16 16 C -0.16 -2.85 9.82 -39.52 -0.39 -3.24 16 17 C 0.00 0.01 6.32 -39.49 -0.25 -0.24 16 18 Cl -0.09 -1.39 28.95 -51.86 -1.50 -2.89 16 19 C -0.20 -3.33 9.67 -39.38 -0.38 -3.71 16 20 C 0.25 4.44 6.33 -83.51 -0.53 3.91 16 21 N -0.86 -13.28 9.09 32.54 0.30 -12.99 16 22 H 0.01 0.19 6.66 -51.93 -0.35 -0.16 16 23 H 0.09 2.33 5.93 -51.93 -0.31 2.02 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.02 0.32 7.29 -51.93 -0.38 -0.05 16 27 H 0.07 1.16 6.24 -51.93 -0.32 0.84 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.12 2.33 7.06 -52.48 -0.37 1.96 16 30 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.41 6.63 8.11 -40.82 -0.33 6.30 16 33 H 0.39 4.78 8.85 -40.82 -0.36 4.42 16 LS Contribution 286.13 15.07 4.31 4.31 Total: -1.00 -27.87 286.13 -7.73 -35.60 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -3.99 Total: 7.52 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -1.80 Total: -12.76 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.27 Total: -48.29 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.50 Total: -2.89 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.87 -7.73 -35.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063086790.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.320 kcal (2) G-P(sol) polarization free energy of solvation -27.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds