Wall clock time and date at job start Mon Mar 30 2020 07:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46895 * 2 1 4 4 N 1.29026 * 124.91681 * 89.99555 * 3 2 1 5 5 C 1.31788 * 117.12317 * 179.97438 * 4 3 2 6 6 C 1.50698 * 122.74660 * 179.97438 * 5 4 3 7 7 C 1.52993 * 109.47393 * 305.02817 * 6 5 4 8 8 N 1.46905 * 109.47039 * 180.02562 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.46917 * 324.99892 * 9 8 7 11 11 C 1.52993 * 109.47269 * 84.99904 * 9 8 7 12 12 C 1.50692 * 109.46945 * 205.00102 * 9 8 7 13 13 H 1.08004 * 120.00412 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00142 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99996 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 120.00298 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.46869 * 89.99787 * 16 14 12 18 18 H 1.48500 * 109.47188 * 210.00019 * 16 14 12 19 19 H 1.48502 * 109.46848 * 330.00340 * 16 14 12 20 20 C 1.33636 * 114.49825 * 0.23909 * 5 4 3 21 21 S 1.70982 * 124.91384 * 269.99675 * 3 2 1 22 22 H 1.09005 * 109.46719 * 60.00221 * 1 2 3 23 23 H 1.08998 * 109.46680 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47270 * 300.00716 * 1 2 3 25 25 H 1.08999 * 109.47451 * 239.99807 * 2 1 3 26 26 H 1.08999 * 109.47002 * 119.99444 * 2 1 3 27 27 H 1.09001 * 109.46495 * 185.02704 * 6 5 4 28 28 H 1.08998 * 109.46910 * 65.03204 * 6 5 4 29 29 H 1.09001 * 109.47393 * 60.00436 * 7 6 5 30 30 H 1.08998 * 109.47408 * 300.00082 * 7 6 5 31 31 H 1.00901 * 110.99869 * 56.04956 * 8 7 6 32 32 H 1.09006 * 109.47343 * 180.02562 * 11 9 8 33 33 H 1.09004 * 109.47587 * 300.00069 * 11 9 8 34 34 H 1.09000 * 109.47161 * 60.00137 * 11 9 8 35 35 H 0.97004 * 120.00312 * 179.97438 * 15 14 12 36 36 H 1.08003 * 126.03677 * 179.77089 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2784 2.1172 1.0580 5 6 2.7141 3.3481 0.8793 6 6 3.0400 4.2718 2.0245 7 6 1.8265 4.3854 2.9493 8 7 2.1441 5.2864 4.0654 9 6 0.9996 5.4194 4.9766 10 1 0.0731 5.3870 4.4033 11 6 1.0151 4.2700 5.9861 12 6 1.0911 6.7330 5.7094 13 1 1.9171 7.4019 5.5179 14 6 0.1208 7.0804 6.6254 15 7 -0.8848 6.2657 6.8591 16 14 0.2346 8.7084 7.5344 17 1 -0.4729 9.7588 6.7590 18 1 -0.3943 8.5730 8.8729 19 1 1.6615 9.0876 7.6939 20 6 2.8379 3.7117 -0.4007 21 16 2.3586 2.3435 -1.4021 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.2937 5.2577 1.6350 28 1 3.8866 3.8730 2.5833 29 1 1.5729 3.3995 3.3388 30 1 0.9799 4.7842 2.3906 31 1 2.4446 6.1884 3.7276 32 1 0.1655 4.3685 6.6620 33 1 0.9489 3.3198 5.4561 34 1 1.9415 4.3024 6.5594 35 1 -1.5672 6.5100 7.5038 36 1 3.1738 4.6739 -0.7582 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068614989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:58 Heat of formation + Delta-G solvation = 25.665895 kcal Electronic energy + Delta-G solvation = -16138.351401 eV Core-core repulsion = 13555.625257 eV Total energy + Delta-G solvation = -2582.726144 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.94973 -36.13080 -34.44182 -32.85687 -31.00167 -29.06550 -26.97691 -25.42247 -25.10536 -22.62983 -21.31493 -19.80392 -19.59823 -17.47802 -16.41385 -15.62210 -15.07013 -14.77977 -14.56507 -14.35133 -13.90446 -13.33896 -13.21441 -12.75650 -12.59029 -12.36051 -11.84735 -11.73824 -11.41414 -11.29733 -11.19492 -10.93503 -10.70478 -10.55671 -10.17490 -10.05577 -9.87856 -9.55444 -9.41429 -8.79700 -8.63661 -8.43980 -7.21773 -5.99035 -4.05569 0.70444 1.34071 1.70832 2.84004 3.31287 3.37820 3.41887 3.99160 4.42705 4.75254 4.94857 5.02312 5.08688 5.27299 5.32214 5.38849 5.57023 5.60250 5.72410 5.79345 5.85833 6.00175 6.02610 6.28524 6.53424 6.65007 6.97022 7.21873 7.30349 7.56762 7.81045 7.81933 7.95390 8.32527 8.44022 8.72539 9.05672 9.60155 11.07329 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.035489 B = 0.003925 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.790549 B = 7131.935734 C = 7587.232833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.055 3.945 4 N -0.460 5.460 5 C 0.086 3.914 6 C -0.044 4.044 7 C 0.071 3.929 8 N -0.689 5.689 9 C 0.212 3.788 10 H -0.001 1.001 11 C -0.124 4.124 12 C -0.518 4.518 13 H 0.060 0.940 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.897 3.103 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.263 4.263 21 S 0.090 5.910 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.014 0.986 31 H 0.328 0.672 32 H 0.079 0.921 33 H 0.005 0.995 34 H 0.031 0.969 35 H 0.260 0.740 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 -10.046 -16.908 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.224 4.224 4 N -0.175 5.175 5 C -0.045 4.045 6 C -0.085 4.085 7 C -0.059 4.059 8 N -0.320 5.320 9 C 0.105 3.895 10 H 0.017 0.983 11 C -0.182 4.182 12 C -0.557 4.557 13 H 0.078 0.922 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.724 3.276 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.402 4.402 21 S 0.344 5.656 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.101 0.899 26 H 0.113 0.887 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.033 0.967 31 H 0.145 0.855 32 H 0.098 0.902 33 H 0.024 0.976 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.123 -10.978 -16.975 20.854 hybrid contribution -0.409 2.081 0.615 2.208 sum 4.715 -8.897 -16.360 19.210 Atomic orbital electron populations 1.21776 0.93426 1.02509 1.02924 1.20222 0.96830 0.87593 1.04103 1.27114 1.02810 1.01749 0.90692 1.66090 1.14134 1.05982 1.31251 1.20438 0.98598 0.91116 0.94394 1.20270 1.00288 0.95832 0.92077 1.21774 0.93622 0.99053 0.91479 1.60731 1.39556 1.15339 1.16394 1.19086 0.86104 0.94730 0.89630 0.98299 1.21700 1.01584 0.95008 0.99917 1.21279 1.08645 1.02531 1.23206 0.92210 1.24929 0.95225 0.97152 0.96744 1.69908 1.12076 1.35977 1.34932 0.86524 0.78230 0.83714 0.79083 1.20801 1.21202 1.19827 1.26795 1.13654 1.04119 0.95622 1.83789 1.61725 1.06486 1.13564 0.92481 0.91422 0.91609 0.89855 0.88697 0.90679 0.89427 0.90915 0.96743 0.85523 0.90199 0.97615 0.94989 0.92961 0.80714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 37.16 0.37 -0.93 16 2 C -0.05 -0.43 6.52 -27.88 -0.18 -0.61 16 3 C 0.06 0.69 6.64 -13.45 -0.09 0.60 16 4 N -0.46 -7.15 10.34 -8.05 -0.08 -7.23 16 5 C 0.09 1.29 6.08 -84.22 -0.51 0.78 16 6 C -0.04 -0.69 5.97 -27.89 -0.17 -0.86 16 7 C 0.07 1.39 5.38 -3.82 -0.02 1.37 16 8 N -0.69 -15.34 6.30 -107.96 -0.68 -16.02 16 9 C 0.21 5.61 2.60 -68.87 -0.18 5.43 16 10 H 0.00 -0.02 7.80 -51.93 -0.40 -0.42 16 11 C -0.12 -3.24 9.19 37.15 0.34 -2.90 16 12 C -0.52 -14.56 8.59 -34.44 -0.30 -14.86 16 13 H 0.06 1.64 7.62 -52.48 -0.40 1.24 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -26.02 11.32 55.43 0.63 -25.39 16 16 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 C -0.26 -3.27 11.07 29.12 0.32 -2.95 16 21 S 0.09 0.96 23.18 -107.50 -2.49 -1.53 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 28 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.07 1.54 7.37 -51.93 -0.38 1.16 16 30 H 0.01 0.29 8.06 -51.93 -0.42 -0.12 16 31 H 0.33 6.95 8.23 -39.29 -0.32 6.63 16 32 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 33 H 0.00 0.12 7.45 -51.93 -0.39 -0.27 16 34 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.18 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 313.22 15.07 4.72 4.72 Total: -1.00 -30.71 313.22 -9.00 -39.71 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.57 Total: 2.51 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.51 Total: -13.29 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.14 Total: -48.65 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.49 Total: -1.53 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.71 -9.00 -39.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.375 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds