Wall clock time and date at job start Mon Mar 30 2020 07:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47214 * 2 1 4 4 N 1.29021 * 124.92126 * 89.99240 * 3 2 1 5 5 C 1.31779 * 117.13078 * 180.02562 * 4 3 2 6 6 C 1.50700 * 122.75453 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46779 * 305.02485 * 6 5 4 8 8 N 1.46894 * 109.47093 * 180.02562 * 7 6 5 9 9 C 1.46904 * 111.00006 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47038 * 34.99283 * 9 8 7 11 11 C 1.53005 * 109.46661 * 274.99752 * 9 8 7 12 12 C 1.50701 * 109.47195 * 155.00140 * 9 8 7 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27796 * 12 9 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 C 1.33641 * 114.49456 * 0.23496 * 5 4 3 21 21 S 1.70982 * 124.91270 * 270.00307 * 3 2 1 22 22 H 1.08999 * 109.47070 * 60.00510 * 1 2 3 23 23 H 1.09000 * 109.46823 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46953 * 300.00290 * 1 2 3 25 25 H 1.08997 * 109.47482 * 240.00255 * 2 1 3 26 26 H 1.09003 * 109.47538 * 119.99379 * 2 1 3 27 27 H 1.08994 * 109.47219 * 185.02706 * 6 5 4 28 28 H 1.08995 * 109.47179 * 65.01764 * 6 5 4 29 29 H 1.08997 * 109.47379 * 59.99708 * 7 6 5 30 30 H 1.09003 * 109.46894 * 299.99827 * 7 6 5 31 31 H 1.00902 * 110.99830 * 303.94975 * 8 7 6 32 32 H 1.08996 * 109.47069 * 60.00362 * 11 9 8 33 33 H 1.09004 * 109.46658 * 179.97438 * 11 9 8 34 34 H 1.08995 * 109.47438 * 299.99503 * 11 9 8 35 35 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 36 36 H 1.08008 * 126.03293 * 179.77115 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2784 2.1172 1.0579 5 6 2.7132 3.3483 0.8793 6 6 3.0390 4.2722 2.0244 7 6 1.8257 4.3849 2.9497 8 7 2.1430 5.2859 4.0657 9 6 0.9982 5.4191 4.9767 10 1 0.4651 4.4699 5.0314 11 6 0.0547 6.5046 4.4546 12 6 1.4903 5.7989 6.3495 13 1 2.5476 5.9281 6.5276 14 6 0.5910 5.9754 7.3796 15 7 -0.6965 5.8178 7.1629 16 14 1.2015 6.4387 9.0832 17 1 2.6818 6.5543 9.0640 18 1 0.6082 7.7394 9.4850 19 1 0.7999 5.3902 10.0551 20 6 2.8363 3.7123 -0.4007 21 16 2.3585 2.3435 -1.4021 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 3.2918 5.2583 1.6351 28 1 3.8860 3.8738 2.5829 29 1 1.5728 3.3988 3.3391 30 1 0.9786 4.7833 2.3912 31 1 2.9648 4.9731 4.5605 32 1 -0.3011 6.2298 3.4617 33 1 -0.7949 6.6031 5.1303 34 1 0.5878 7.4537 4.3999 35 1 -1.3291 5.9417 7.8877 36 1 3.1715 4.6748 -0.7582 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068614993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:01 Heat of formation + Delta-G solvation = 25.476746 kcal Electronic energy + Delta-G solvation = -16135.321373 eV Core-core repulsion = 13552.587027 eV Total energy + Delta-G solvation = -2582.734346 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.95011 -36.12476 -34.44218 -32.85226 -30.99966 -29.07643 -26.95672 -25.44115 -25.10661 -22.64078 -21.30563 -19.79651 -19.60029 -17.52514 -16.35351 -15.61537 -14.95225 -14.84257 -14.64560 -14.21486 -14.03793 -13.29451 -13.25255 -12.92602 -12.46337 -12.24056 -11.87996 -11.72601 -11.53865 -11.29771 -11.07357 -10.91188 -10.70921 -10.63398 -10.15885 -10.07068 -9.88443 -9.57207 -9.41368 -8.78347 -8.63992 -8.44150 -7.21019 -5.98916 -4.05188 0.70700 1.34231 1.71058 2.83696 3.31149 3.38685 3.43174 3.99345 4.43296 4.75235 4.95027 5.02038 5.08785 5.27973 5.32573 5.40051 5.59693 5.63053 5.68945 5.75833 5.93696 5.97784 6.02219 6.28710 6.53598 6.63982 6.93891 7.19166 7.28591 7.55692 7.81063 7.82209 7.94995 8.31568 8.43864 8.72729 9.06169 9.60642 11.07636 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.033758 B = 0.003930 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.240876 B = 7123.035079 C = 7467.792563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.055 3.945 4 N -0.462 5.462 5 C 0.085 3.915 6 C -0.044 4.044 7 C 0.071 3.929 8 N -0.691 5.691 9 C 0.211 3.789 10 H 0.001 0.999 11 C -0.123 4.123 12 C -0.516 4.516 13 H 0.060 0.940 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.260 4.260 21 S 0.090 5.910 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.029 0.971 30 H 0.059 0.941 31 H 0.330 0.670 32 H 0.003 0.997 33 H 0.080 0.920 34 H 0.031 0.969 35 H 0.260 0.740 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.930 -9.437 -17.340 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.224 4.224 4 N -0.176 5.176 5 C -0.047 4.047 6 C -0.084 4.084 7 C -0.060 4.060 8 N -0.322 5.322 9 C 0.104 3.896 10 H 0.018 0.982 11 C -0.182 4.182 12 C -0.555 4.555 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.399 4.399 21 S 0.345 5.655 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.146 0.854 32 H 0.022 0.978 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.451 -9.274 -18.162 20.873 hybrid contribution 0.426 0.071 1.994 2.040 sum 4.877 -9.203 -16.168 19.232 Atomic orbital electron populations 1.21774 0.93419 1.02508 1.02929 1.20219 0.96839 0.87613 1.04071 1.27100 1.02875 1.01742 0.90722 1.66085 1.14173 1.06046 1.31322 1.20439 0.98735 0.91027 0.94484 1.20273 0.99550 0.96170 0.92448 1.21744 0.95624 0.95323 0.93296 1.60737 1.08566 1.49961 1.12894 1.19098 0.87081 0.94158 0.89310 0.98175 1.21704 1.00937 0.98630 0.96893 1.21312 0.93488 1.47272 0.93433 0.92143 1.24928 0.94847 0.95303 0.99004 1.69914 1.01074 1.49832 1.32128 0.86467 0.78974 0.78018 0.84091 1.19740 1.20992 1.21121 1.26808 1.13423 1.04080 0.95585 1.83789 1.61743 1.06448 1.13540 0.92446 0.91431 0.91632 0.89854 0.88758 0.89687 0.90468 0.95321 0.92223 0.85351 0.97830 0.90180 0.94984 0.93025 0.80618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 37.16 0.37 -0.93 16 2 C -0.05 -0.43 6.52 -27.88 -0.18 -0.61 16 3 C 0.05 0.68 6.64 -13.46 -0.09 0.59 16 4 N -0.46 -7.17 10.34 -8.06 -0.08 -7.26 16 5 C 0.08 1.26 6.08 -84.23 -0.51 0.75 16 6 C -0.04 -0.69 5.97 -27.88 -0.17 -0.85 16 7 C 0.07 1.38 5.38 -3.82 -0.02 1.35 16 8 N -0.69 -15.35 6.30 -107.95 -0.68 -16.03 16 9 C 0.21 5.58 2.60 -68.86 -0.18 5.40 16 10 H 0.00 0.02 7.80 -51.93 -0.41 -0.39 16 11 C -0.12 -3.20 9.19 37.16 0.34 -2.85 16 12 C -0.52 -14.55 8.59 -34.44 -0.30 -14.84 16 13 H 0.06 1.67 7.62 -52.49 -0.40 1.27 16 14 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 15 N -0.89 -26.05 11.33 55.43 0.63 -25.42 16 16 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.26 -3.23 11.07 29.12 0.32 -2.91 16 21 S 0.09 0.97 23.18 -107.50 -2.49 -1.53 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.03 0.61 7.99 -51.93 -0.41 0.19 16 30 H 0.06 1.22 7.43 -51.93 -0.39 0.83 16 31 H 0.33 7.09 8.22 -39.29 -0.32 6.77 16 32 H 0.00 0.06 7.45 -51.93 -0.39 -0.32 16 33 H 0.08 2.24 6.08 -51.93 -0.32 1.92 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.18 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -30.67 313.24 -9.00 -39.67 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.57 Total: 2.54 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.51 Total: -13.29 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.14 Total: -48.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.49 Total: -1.53 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.67 -9.00 -39.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.152 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds