Wall clock time and date at job start Mon Mar 30 2020 07:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47214 * 2 1 4 4 N 1.29021 * 124.92126 * 89.99240 * 3 2 1 5 5 C 1.31779 * 117.13078 * 180.02562 * 4 3 2 6 6 C 1.50700 * 122.75453 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46779 * 305.02485 * 6 5 4 8 8 N 1.46894 * 109.47093 * 180.02562 * 7 6 5 9 9 C 1.46904 * 111.00006 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47038 * 34.99283 * 9 8 7 11 11 C 1.53005 * 109.46661 * 274.99752 * 9 8 7 12 12 C 1.50701 * 109.47195 * 155.00140 * 9 8 7 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27796 * 12 9 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 C 1.33641 * 114.49456 * 0.23496 * 5 4 3 21 21 S 1.70982 * 124.91270 * 270.00307 * 3 2 1 22 22 H 1.08999 * 109.47070 * 60.00510 * 1 2 3 23 23 H 1.09000 * 109.46823 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46953 * 300.00290 * 1 2 3 25 25 H 1.08997 * 109.47482 * 240.00255 * 2 1 3 26 26 H 1.09003 * 109.47538 * 119.99379 * 2 1 3 27 27 H 1.08994 * 109.47219 * 185.02706 * 6 5 4 28 28 H 1.08995 * 109.47179 * 65.01764 * 6 5 4 29 29 H 1.08997 * 109.47379 * 59.99708 * 7 6 5 30 30 H 1.09003 * 109.46894 * 299.99827 * 7 6 5 31 31 H 1.00902 * 110.99830 * 303.94975 * 8 7 6 32 32 H 1.08996 * 109.47069 * 60.00362 * 11 9 8 33 33 H 1.09004 * 109.46658 * 179.97438 * 11 9 8 34 34 H 1.08995 * 109.47438 * 299.99503 * 11 9 8 35 35 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 36 36 H 1.08008 * 126.03293 * 179.77115 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2784 2.1172 1.0579 5 6 2.7132 3.3483 0.8793 6 6 3.0390 4.2722 2.0244 7 6 1.8257 4.3849 2.9497 8 7 2.1430 5.2859 4.0657 9 6 0.9982 5.4191 4.9767 10 1 0.4651 4.4699 5.0314 11 6 0.0547 6.5046 4.4546 12 6 1.4903 5.7989 6.3495 13 1 2.5476 5.9281 6.5276 14 6 0.5910 5.9754 7.3796 15 7 -0.6965 5.8178 7.1629 16 14 1.2015 6.4387 9.0832 17 1 2.6818 6.5543 9.0640 18 1 0.6082 7.7394 9.4850 19 1 0.7999 5.3902 10.0551 20 6 2.8363 3.7123 -0.4007 21 16 2.3585 2.3435 -1.4021 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 3.2918 5.2583 1.6351 28 1 3.8860 3.8738 2.5829 29 1 1.5728 3.3988 3.3391 30 1 0.9786 4.7833 2.3912 31 1 2.9648 4.9731 4.5605 32 1 -0.3011 6.2298 3.4617 33 1 -0.7949 6.6031 5.1303 34 1 0.5878 7.4537 4.3999 35 1 -1.3291 5.9417 7.8877 36 1 3.1715 4.6748 -0.7582 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068614993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:01 Heat of formation + Delta-G solvation = 5.504829 kcal Electronic energy + Delta-G solvation = -16136.187420 eV Core-core repulsion = 13552.587027 eV Total energy + Delta-G solvation = -2583.600393 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.96795 -37.94113 -35.55390 -34.56898 -32.52791 -30.49113 -28.52709 -27.30321 -26.29051 -24.01600 -22.40987 -21.74549 -20.66360 -18.76317 -18.24526 -16.89831 -16.62960 -16.14251 -15.85545 -15.53924 -15.27634 -14.85264 -14.67308 -14.06250 -13.94298 -13.66378 -13.20103 -13.03362 -12.91250 -12.64518 -12.56409 -12.45152 -12.34587 -12.21693 -12.02868 -11.90027 -11.73797 -10.90423 -10.60313 -10.54114 -10.35445 -9.61836 -9.12154 -8.14611 -6.29657 -0.23389 0.45228 0.75989 1.41670 1.42595 1.55390 1.79351 2.41135 3.11114 3.14080 3.57428 3.91714 4.17692 4.21732 4.30943 4.31162 4.32650 4.60223 4.61690 4.72895 4.81440 4.94788 5.00549 5.03140 5.04150 5.09013 5.17632 5.25453 5.33705 5.44896 5.65327 5.82939 6.18843 6.42692 6.73387 6.85238 6.97660 7.41043 8.91846 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.033758 B = 0.003930 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.240876 B = 7123.035079 C = 7467.792563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.038 3.962 4 N -0.507 5.507 5 C 0.054 3.946 6 C -0.031 4.031 7 C 0.081 3.919 8 N -0.683 5.683 9 C 0.214 3.786 10 H -0.038 1.038 11 C -0.111 4.111 12 C -0.538 4.538 13 H 0.063 0.937 14 C 0.011 3.989 15 N -0.920 5.920 16 Si 0.967 3.033 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.281 1.281 20 C -0.261 4.261 21 S 0.156 5.844 22 H 0.063 0.937 23 H 0.089 0.911 24 H 0.035 0.965 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.005 0.995 30 H 0.048 0.952 31 H 0.334 0.666 32 H 0.017 0.983 33 H 0.057 0.943 34 H 0.032 0.968 35 H 0.263 0.737 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.994 -9.542 -18.662 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 C -0.240 4.240 4 N -0.222 5.222 5 C -0.077 4.077 6 C -0.071 4.071 7 C -0.050 4.050 8 N -0.313 5.313 9 C 0.105 3.895 10 H -0.021 1.021 11 C -0.169 4.169 12 C -0.576 4.576 13 H 0.081 0.919 14 C -0.188 4.188 15 N -0.560 5.560 16 Si 0.792 3.208 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.207 1.207 20 C -0.400 4.400 21 S 0.411 5.589 22 H 0.082 0.918 23 H 0.108 0.892 24 H 0.055 0.945 25 H 0.132 0.868 26 H 0.107 0.893 27 H 0.119 0.881 28 H 0.096 0.904 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.151 0.849 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.527 -9.389 -19.509 22.345 hybrid contribution 0.064 0.044 2.281 2.282 sum 5.591 -9.345 -17.228 20.381 Atomic orbital electron populations 1.21759 0.93192 1.03616 1.01747 1.20393 0.96939 0.86220 1.05322 1.27630 1.02288 1.02906 0.91207 1.66067 1.15875 1.06855 1.33420 1.20323 1.01090 0.91262 0.95044 1.20077 0.97333 0.97511 0.92201 1.21655 0.97377 0.93165 0.92766 1.60672 1.07262 1.50868 1.12540 1.18931 0.88122 0.92339 0.90096 1.02080 1.21522 0.99970 0.98461 0.96996 1.21621 0.93750 1.47738 0.94507 0.91931 1.25799 0.94944 0.95002 1.03080 1.70046 1.02229 1.50256 1.33439 0.85367 0.78769 0.77744 0.78892 1.18840 1.20389 1.20658 1.27157 1.11838 1.05691 0.95309 1.83516 1.59903 1.04303 1.11169 0.91814 0.89216 0.94537 0.86783 0.89311 0.88138 0.90370 0.97653 0.93390 0.84878 0.96436 0.92454 0.94866 0.92800 0.78367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.89 71.98 0.71 -1.69 16 2 C -0.05 -0.82 6.52 29.85 0.19 -0.63 16 3 C 0.04 0.90 6.64 88.52 0.59 1.48 16 4 N -0.51 -15.77 10.34 -179.40 -1.86 -17.63 16 5 C 0.05 1.59 6.08 41.52 0.25 1.84 16 6 C -0.03 -0.96 5.97 29.85 0.18 -0.78 16 7 C 0.08 3.22 5.38 86.31 0.46 3.69 16 8 N -0.68 -30.80 6.30 -495.43 -3.12 -33.92 16 9 C 0.21 11.60 2.60 44.17 0.11 11.72 16 10 H -0.04 -2.34 7.80 -2.39 -0.02 -2.36 16 11 C -0.11 -5.86 9.19 71.98 0.66 -5.20 16 12 C -0.54 -30.65 8.59 25.60 0.22 -30.43 16 13 H 0.06 3.46 7.62 -2.91 -0.02 3.44 16 14 C 0.01 0.61 5.31 84.65 0.45 1.06 16 15 N -0.92 -54.72 11.33 21.45 0.24 -54.48 16 16 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 C -0.26 -5.96 11.07 66.78 0.74 -5.22 16 21 S 0.16 2.94 23.18 -56.49 -1.31 1.63 16 22 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.10 2.75 8.03 -2.39 -0.02 2.73 16 28 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.01 0.23 7.99 -2.39 -0.02 0.21 16 30 H 0.05 2.00 7.43 -2.39 -0.02 1.99 16 31 H 0.33 14.53 8.22 -89.69 -0.74 13.79 16 32 H 0.02 0.82 7.45 -2.39 -0.02 0.80 16 33 H 0.06 3.28 6.08 -2.38 -0.01 3.27 16 34 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.20 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -66.85 313.24 0.88 -65.97 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.32 Total: 16.22 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 4.57 Total: -24.16 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -4.73 Total: -106.03 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.31 Total: 1.63 kcal Total: -66.85 0.88 -65.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.473 kcal (2) G-P(sol) polarization free energy of solvation -66.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds