Wall clock time and date at job start Mon Mar 30 2020 07:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 C 1.53002 * 109.46838 * 269.99555 * 6 5 4 8 8 C 1.53001 * 109.46830 * 179.97438 * 7 6 5 9 9 N 1.46904 * 109.46663 * 180.02562 * 8 7 6 10 10 C 1.46904 * 110.99784 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.46640 * 324.99552 * 10 9 8 12 12 C 1.52990 * 109.47364 * 85.00117 * 10 9 8 13 13 C 1.50704 * 109.47166 * 205.00245 * 10 9 8 14 14 H 1.08000 * 119.99867 * 359.97438 * 13 10 9 15 15 C 1.37869 * 120.00339 * 179.97438 * 13 10 9 16 16 N 1.31523 * 119.99803 * 0.02562 * 15 13 10 17 17 Si 1.86791 * 120.00315 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47210 * 90.00242 * 17 15 13 19 19 H 1.48504 * 109.47331 * 209.99935 * 17 15 13 20 20 H 1.48499 * 109.47195 * 330.00132 * 17 15 13 21 21 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 22 22 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 25 25 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 26 26 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 27 27 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 28 28 H 1.09000 * 109.47428 * 300.00004 * 7 6 5 29 29 H 1.09004 * 109.47230 * 59.99848 * 7 6 5 30 30 H 1.08998 * 109.47655 * 299.99904 * 8 7 6 31 31 H 1.08996 * 109.46711 * 60.00762 * 8 7 6 32 32 H 1.00898 * 111.00380 * 303.95134 * 9 8 7 33 33 H 1.09001 * 109.47318 * 180.02562 * 12 10 9 34 34 H 1.09001 * 109.47481 * 300.00027 * 12 10 9 35 35 H 1.08997 * 109.47251 * 60.00005 * 12 10 9 36 36 H 0.97002 * 120.00033 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5074 -1.4589 8 6 5.8083 -3.6697 -1.4659 9 7 6.1255 -4.0343 -2.8532 10 6 7.0799 -5.1501 -2.8991 11 1 7.7792 -5.0644 -2.0674 12 6 6.3216 -6.4746 -2.7936 13 6 7.8394 -5.1083 -4.2001 14 1 7.6333 -4.3309 -4.9209 15 6 8.7972 -6.0625 -4.4702 16 7 9.0478 -7.0095 -3.5927 17 14 9.7380 -6.0111 -6.0831 18 1 10.9621 -5.1872 -5.9161 19 1 10.1200 -7.3909 -6.4776 20 1 8.8798 -5.4144 -7.1380 21 7 2.2199 -1.1083 -0.0064 22 1 -0.3633 -0.0052 1.0277 23 1 -0.3633 -0.8874 -0.5184 24 1 -0.3633 0.8926 -0.5093 25 1 1.8392 2.1308 0.0005 26 1 5.3966 -1.8274 0.5002 27 1 4.0439 -2.9843 0.4958 28 1 3.9003 -2.8071 -1.9733 29 1 5.2530 -1.6502 -1.9690 30 1 6.7213 -3.3696 -0.9517 31 1 5.3690 -4.5269 -0.9559 32 1 5.2873 -4.2545 -3.3699 33 1 7.0298 -7.3025 -2.8272 34 1 5.7723 -6.5050 -1.8526 35 1 5.6223 -6.5602 -3.6253 36 1 9.7220 -7.6806 -3.7825 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068616778.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:28 Heat of formation + Delta-G solvation = 25.025435 kcal Electronic energy + Delta-G solvation = -15835.677943 eV Core-core repulsion = 13252.924026 eV Total energy + Delta-G solvation = -2582.753916 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.97796 -36.57697 -34.45010 -32.49481 -31.11174 -28.60115 -27.70592 -25.64868 -25.05351 -22.50929 -21.01866 -20.12922 -19.79089 -17.70565 -16.28186 -15.56887 -15.09189 -15.01496 -14.67837 -14.23352 -13.64872 -13.54991 -13.06506 -12.84371 -12.71091 -12.51774 -11.93983 -11.73180 -11.46454 -11.43105 -11.14084 -10.91085 -10.77503 -10.59946 -10.28539 -10.08649 -9.85592 -9.68324 -9.48828 -8.98376 -8.77025 -8.33367 -7.19905 -5.95758 -3.98932 0.59912 1.27137 1.65549 2.66135 3.34887 3.40799 3.45291 3.93352 4.46380 4.75799 4.96143 5.05641 5.10917 5.12167 5.35166 5.35775 5.46514 5.56281 5.67212 5.75846 5.80397 6.00319 6.08967 6.16187 6.48212 6.55176 6.72975 6.87921 7.13447 7.40631 7.66552 7.77072 7.91740 8.30944 8.57373 8.65744 9.08501 9.66421 11.11348 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.042732 B = 0.003337 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.090091 B = 8388.265796 C = 8584.227628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.068 3.932 3 C -0.275 4.275 4 S 0.117 5.883 5 C 0.070 3.930 6 C -0.046 4.046 7 C -0.108 4.108 8 C 0.062 3.938 9 N -0.686 5.686 10 C 0.211 3.789 11 H 0.033 0.967 12 C -0.169 4.169 13 C -0.495 4.495 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.274 1.274 21 N -0.477 5.477 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.174 0.826 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.020 0.980 32 H 0.325 0.675 33 H 0.089 0.911 34 H 0.005 0.995 35 H 0.027 0.973 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.322 14.299 9.089 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.414 4.414 4 S 0.373 5.627 5 C -0.208 4.208 6 C -0.087 4.087 7 C -0.148 4.148 8 C -0.069 4.069 9 N -0.315 5.315 10 C 0.103 3.897 11 H 0.051 0.949 12 C -0.228 4.228 13 C -0.534 4.534 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.199 1.199 21 N -0.192 5.192 22 H 0.092 0.908 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.191 0.809 26 H 0.106 0.894 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.141 0.859 33 H 0.107 0.893 34 H 0.024 0.976 35 H 0.046 0.954 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.969 14.661 9.052 20.979 hybrid contribution -0.959 -0.747 -0.544 1.332 sum -12.927 13.914 8.508 20.811 Atomic orbital electron populations 1.20352 0.87276 1.03322 1.02812 1.20333 0.98251 0.86627 1.01242 1.26761 0.95360 1.03812 1.15442 1.84072 1.07163 1.03438 1.68044 1.27188 0.94003 0.98348 1.01251 1.20363 0.95105 0.93451 0.99811 1.21581 0.99808 0.99939 0.93440 1.21861 0.97329 0.94969 0.92700 1.60808 1.16622 1.44251 1.09827 1.19172 0.89317 0.83578 0.97643 0.94895 1.22427 0.99904 1.04580 0.95921 1.21183 1.18606 1.11113 1.02461 0.91953 1.24958 0.97162 0.95455 0.97041 1.69891 1.33455 1.15471 1.35027 0.86503 0.80125 0.76970 0.83811 1.20773 1.21438 1.19935 1.66152 1.04618 1.31473 1.16913 0.90758 0.90529 0.90839 0.80896 0.89411 0.88789 0.91789 0.91032 0.91636 0.96178 0.85900 0.89286 0.97602 0.95364 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.31 36.01 0.37 -0.27 16 2 C 0.07 0.78 6.74 -84.22 -0.57 0.21 16 3 C -0.27 -2.76 11.13 29.12 0.32 -2.44 16 4 S 0.12 1.25 23.18 -107.50 -2.49 -1.24 16 5 C 0.07 0.89 6.64 -13.46 -0.09 0.80 16 6 C -0.05 -0.56 5.80 -27.88 -0.16 -0.72 16 7 C -0.11 -1.55 5.46 -26.73 -0.15 -1.70 16 8 C 0.06 1.08 5.48 -3.82 -0.02 1.06 16 9 N -0.69 -14.68 6.23 -107.95 -0.67 -15.35 16 10 C 0.21 5.35 2.57 -68.87 -0.18 5.18 16 11 H 0.03 0.91 7.80 -51.93 -0.40 0.51 16 12 C -0.17 -4.12 8.94 37.15 0.33 -3.79 16 13 C -0.49 -13.88 8.84 -34.44 -0.30 -14.19 16 14 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 15 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 16 N -0.90 -25.95 11.32 55.43 0.63 -25.32 16 17 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 N -0.48 -6.54 10.53 -8.06 -0.08 -6.63 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 25 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 31 H 0.02 0.35 7.44 -51.93 -0.39 -0.03 16 32 H 0.32 6.67 8.47 -39.29 -0.33 6.33 16 33 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 34 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 35 H 0.03 0.66 8.13 -51.93 -0.42 0.23 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 313.90 15.07 4.73 4.73 Total: -1.00 -30.23 313.90 -9.04 -39.27 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.59 Total: 2.32 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -0.53 Total: -14.44 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.13 Total: -47.31 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.49 Total: -1.24 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.23 -9.04 -39.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068616778.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.292 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds