Wall clock time and date at job start Mon Mar 30 2020 07:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33635 * 122.75231 * 2 1 4 4 S 1.76193 * 107.92765 * 179.97438 * 3 2 1 5 5 C 1.70977 * 90.28261 * 359.97438 * 4 3 2 6 6 C 1.50697 * 124.91947 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47165 * 270.02933 * 6 5 4 8 8 C 1.53000 * 109.47398 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.47300 * 179.97438 * 8 7 6 10 10 C 1.46903 * 111.00000 * 179.97438 * 9 8 7 11 11 H 1.09007 * 109.47052 * 34.99701 * 10 9 8 12 12 C 1.53000 * 109.47096 * 275.00251 * 10 9 8 13 13 C 1.50694 * 109.47066 * 155.00016 * 10 9 8 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 N 1.29030 * 110.16783 * 0.24497 * 5 4 3 22 22 H 1.09002 * 109.46381 * 89.98241 * 1 2 3 23 23 H 1.08998 * 109.47663 * 209.97816 * 1 2 3 24 24 H 1.09000 * 109.47218 * 329.99100 * 1 2 3 25 25 H 1.08005 * 126.03672 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47296 * 150.02354 * 6 5 4 27 27 H 1.09001 * 109.47003 * 30.02363 * 6 5 4 28 28 H 1.08993 * 109.47447 * 59.99357 * 7 6 5 29 29 H 1.09009 * 109.46976 * 299.99737 * 7 6 5 30 30 H 1.09002 * 109.47131 * 59.99379 * 8 7 6 31 31 H 1.09001 * 109.46935 * 299.99531 * 8 7 6 32 32 H 1.00896 * 110.99858 * 303.94976 * 9 8 7 33 33 H 1.08998 * 109.47089 * 59.99840 * 12 10 9 34 34 H 1.08995 * 109.47131 * 180.02562 * 12 10 9 35 35 H 1.09002 * 109.47106 * 299.99893 * 12 10 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 0.0018 6 6 4.4835 -2.1272 0.0022 7 6 4.8153 -2.5151 -1.4401 8 6 5.8102 -3.6774 -1.4396 9 7 6.1283 -4.0502 -2.8245 10 6 7.0837 -5.1655 -2.8632 11 1 6.8872 -5.8413 -2.0308 12 6 8.5089 -4.6202 -2.7520 13 6 6.9315 -5.9123 -4.1632 14 1 6.1982 -5.5910 -4.8881 15 6 7.7279 -7.0066 -4.4269 16 7 8.6206 -7.3982 -3.5441 17 14 7.5388 -7.9327 -6.0381 18 1 6.5355 -9.0148 -5.8723 19 1 7.0859 -6.9957 -7.0975 20 1 8.8450 -8.5238 -6.4254 21 7 2.2199 -1.1084 -0.0037 22 1 -0.3632 0.0003 -1.0277 23 1 -0.3634 -0.8901 0.5135 24 1 -0.3633 0.8899 0.5140 25 1 1.8393 2.1308 0.0004 26 1 4.0432 -2.9816 0.5163 27 1 5.3959 -1.8247 0.5161 28 1 5.2554 -1.6607 -1.9540 29 1 3.9028 -2.8176 -1.9540 30 1 5.3703 -4.5320 -0.9255 31 1 6.7225 -3.3745 -0.9259 32 1 5.2904 -4.2735 -3.3404 33 1 8.6188 -4.0800 -1.8117 34 1 9.2177 -5.4476 -2.7812 35 1 8.7053 -3.9444 -3.5843 36 1 9.1806 -8.1683 -3.7295 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068616781.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:30 Heat of formation + Delta-G solvation = 23.966351 kcal Electronic energy + Delta-G solvation = -15834.902982 eV Core-core repulsion = 13252.103140 eV Total energy + Delta-G solvation = -2582.799842 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.97531 -36.50459 -34.42191 -32.51245 -31.08056 -28.62831 -27.71512 -25.84793 -25.02689 -22.52885 -21.00719 -19.83765 -19.68425 -17.69956 -16.47257 -15.51968 -15.19235 -15.07418 -14.67920 -14.04130 -13.76790 -13.52368 -13.02867 -12.98464 -12.63461 -12.61392 -11.86188 -11.77961 -11.53565 -11.43702 -11.01939 -10.87505 -10.70986 -10.53171 -10.18290 -10.08296 -9.91887 -9.67742 -9.48693 -8.83121 -8.75557 -8.46131 -7.24800 -6.01416 -4.07699 0.60018 1.27061 1.65410 2.66574 3.30563 3.37059 3.41261 3.93598 4.41429 4.76044 4.96312 5.05625 5.11080 5.12364 5.30349 5.36821 5.46577 5.56413 5.68031 5.76673 5.81092 6.01611 6.09690 6.16856 6.49250 6.56288 6.90508 7.15819 7.25430 7.52651 7.66923 7.79795 7.91896 8.29269 8.41157 8.69716 9.03237 9.58241 11.04999 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.040919 B = 0.003384 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.112510 B = 8273.258971 C = 8653.425377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.068 3.932 3 C -0.275 4.275 4 S 0.116 5.884 5 C 0.071 3.929 6 C -0.046 4.046 7 C -0.108 4.108 8 C 0.062 3.938 9 N -0.690 5.690 10 C 0.211 3.789 11 H 0.001 0.999 12 C -0.124 4.124 13 C -0.519 4.519 14 H 0.060 0.940 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.273 1.273 20 H -0.286 1.286 21 N -0.476 5.476 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.174 0.826 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.021 0.979 31 H 0.064 0.936 32 H 0.330 0.670 33 H 0.004 0.996 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.495 15.730 8.910 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.064 4.064 3 C -0.414 4.414 4 S 0.371 5.629 5 C -0.208 4.208 6 C -0.087 4.087 7 C -0.148 4.148 8 C -0.068 4.068 9 N -0.321 5.321 10 C 0.103 3.897 11 H 0.018 0.982 12 C -0.183 4.183 13 C -0.557 4.557 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.725 3.275 18 H -0.208 1.208 19 H -0.198 1.198 20 H -0.212 1.212 21 N -0.191 5.191 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.191 0.809 26 H 0.113 0.887 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.023 0.977 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.116 16.099 8.869 20.980 hybrid contribution -1.510 -1.175 -0.583 2.000 sum -11.626 14.924 8.286 20.653 Atomic orbital electron populations 1.20353 0.87266 1.03186 1.02968 1.20339 0.98261 0.86622 1.01189 1.26755 0.95331 1.03808 1.15486 1.84050 1.07215 1.03477 1.68124 1.27191 0.94006 0.98315 1.01239 1.20363 0.95085 0.93461 0.99832 1.21579 0.99881 0.99818 0.93473 1.21868 0.97173 0.95073 0.92704 1.60709 1.17102 1.44118 1.10209 1.19104 0.88814 0.85631 0.96109 0.98166 1.21713 1.00168 1.00046 0.96336 1.21284 1.19947 1.11683 1.02810 0.92221 1.24928 0.95090 0.97084 0.96951 1.69900 1.22262 1.26024 1.34751 0.86520 0.77372 0.79887 0.83758 1.20756 1.19833 1.21200 1.66158 1.04616 1.31454 1.16876 0.90629 0.90582 0.90885 0.80895 0.88734 0.89454 0.91141 0.91697 0.96116 0.91727 0.85283 0.97712 0.90132 0.94989 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.31 36.01 0.37 -0.28 16 2 C 0.07 0.79 6.74 -84.22 -0.57 0.22 16 3 C -0.27 -2.77 11.13 29.12 0.32 -2.44 16 4 S 0.12 1.23 23.18 -107.50 -2.49 -1.26 16 5 C 0.07 0.90 6.64 -13.46 -0.09 0.81 16 6 C -0.05 -0.56 5.80 -27.89 -0.16 -0.73 16 7 C -0.11 -1.56 5.46 -26.73 -0.15 -1.71 16 8 C 0.06 1.10 5.48 -3.82 -0.02 1.08 16 9 N -0.69 -14.93 6.30 -107.95 -0.68 -15.61 16 10 C 0.21 5.42 2.60 -68.87 -0.18 5.24 16 11 H 0.00 0.02 7.80 -51.92 -0.40 -0.39 16 12 C -0.12 -3.13 9.19 37.16 0.34 -2.79 16 13 C -0.52 -14.44 8.59 -34.44 -0.30 -14.73 16 14 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 17 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 N -0.48 -6.59 10.53 -8.06 -0.08 -6.67 16 22 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 25 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 26 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 30 H 0.02 0.37 8.06 -51.93 -0.42 -0.04 16 31 H 0.06 1.14 7.44 -51.93 -0.39 0.75 16 32 H 0.33 7.01 8.22 -39.29 -0.32 6.69 16 33 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 34 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 313.58 15.07 4.73 4.73 Total: -1.00 -30.21 313.58 -9.02 -39.22 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.57 Total: 1.94 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -0.52 Total: -13.72 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.14 Total: -47.33 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.49 Total: -1.26 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.21 -9.02 -39.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068616781.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.190 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds