Wall clock time and date at job start Mon Mar 30 2020 07:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33635 * 122.75231 * 2 1 4 4 S 1.76193 * 107.92765 * 179.97438 * 3 2 1 5 5 C 1.70977 * 90.28261 * 359.97438 * 4 3 2 6 6 C 1.50697 * 124.91947 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47165 * 270.02933 * 6 5 4 8 8 C 1.53000 * 109.47398 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.47300 * 179.97438 * 8 7 6 10 10 C 1.46903 * 111.00000 * 179.97438 * 9 8 7 11 11 H 1.09007 * 109.47052 * 34.99701 * 10 9 8 12 12 C 1.53000 * 109.47096 * 275.00251 * 10 9 8 13 13 C 1.50694 * 109.47066 * 155.00016 * 10 9 8 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 N 1.29030 * 110.16783 * 0.24497 * 5 4 3 22 22 H 1.09002 * 109.46381 * 89.98241 * 1 2 3 23 23 H 1.08998 * 109.47663 * 209.97816 * 1 2 3 24 24 H 1.09000 * 109.47218 * 329.99100 * 1 2 3 25 25 H 1.08005 * 126.03672 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47296 * 150.02354 * 6 5 4 27 27 H 1.09001 * 109.47003 * 30.02363 * 6 5 4 28 28 H 1.08993 * 109.47447 * 59.99357 * 7 6 5 29 29 H 1.09009 * 109.46976 * 299.99737 * 7 6 5 30 30 H 1.09002 * 109.47131 * 59.99379 * 8 7 6 31 31 H 1.09001 * 109.46935 * 299.99531 * 8 7 6 32 32 H 1.00896 * 110.99858 * 303.94976 * 9 8 7 33 33 H 1.08998 * 109.47089 * 59.99840 * 12 10 9 34 34 H 1.08995 * 109.47131 * 180.02562 * 12 10 9 35 35 H 1.09002 * 109.47106 * 299.99893 * 12 10 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 0.0018 6 6 4.4835 -2.1272 0.0022 7 6 4.8153 -2.5151 -1.4401 8 6 5.8102 -3.6774 -1.4396 9 7 6.1283 -4.0502 -2.8245 10 6 7.0837 -5.1655 -2.8632 11 1 6.8872 -5.8413 -2.0308 12 6 8.5089 -4.6202 -2.7520 13 6 6.9315 -5.9123 -4.1632 14 1 6.1982 -5.5910 -4.8881 15 6 7.7279 -7.0066 -4.4269 16 7 8.6206 -7.3982 -3.5441 17 14 7.5388 -7.9327 -6.0381 18 1 6.5355 -9.0148 -5.8723 19 1 7.0859 -6.9957 -7.0975 20 1 8.8450 -8.5238 -6.4254 21 7 2.2199 -1.1084 -0.0037 22 1 -0.3632 0.0003 -1.0277 23 1 -0.3634 -0.8901 0.5135 24 1 -0.3633 0.8899 0.5140 25 1 1.8393 2.1308 0.0004 26 1 4.0432 -2.9816 0.5163 27 1 5.3959 -1.8247 0.5161 28 1 5.2554 -1.6607 -1.9540 29 1 3.9028 -2.8176 -1.9540 30 1 5.3703 -4.5320 -0.9255 31 1 6.7225 -3.3745 -0.9259 32 1 5.2904 -4.2735 -3.3404 33 1 8.6188 -4.0800 -1.8117 34 1 9.2177 -5.4476 -2.7812 35 1 8.7053 -3.9444 -3.5843 36 1 9.1806 -8.1683 -3.7295 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068616781.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:30 Heat of formation + Delta-G solvation = 4.734877 kcal Electronic energy + Delta-G solvation = -15835.736921 eV Core-core repulsion = 13252.103140 eV Total energy + Delta-G solvation = -2583.633781 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.83949 -38.14288 -35.87946 -34.16737 -32.32374 -30.21205 -28.51061 -27.50617 -26.83124 -23.68829 -22.23620 -21.69217 -20.64467 -18.58410 -18.47254 -16.96513 -16.55531 -16.22229 -15.93557 -15.45190 -15.29113 -14.71594 -14.40283 -14.11791 -13.72007 -13.49553 -13.41042 -13.11881 -13.02115 -12.80660 -12.59564 -12.38413 -12.20894 -12.19448 -12.16723 -11.76516 -11.63502 -10.88854 -10.59671 -10.57366 -10.35562 -9.60793 -9.05867 -8.13746 -6.28043 -0.25351 0.44299 0.82036 1.42105 1.43094 1.54050 1.79899 2.41550 3.07622 3.14810 3.62382 3.89126 4.06099 4.27564 4.34754 4.37607 4.49949 4.55779 4.72887 4.76762 4.81626 4.85573 4.86227 4.99901 5.09393 5.20946 5.23200 5.25940 5.38073 5.50107 5.67456 5.87252 6.23011 6.47076 6.77946 6.81989 6.99574 7.42477 8.92009 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.040919 B = 0.003384 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.112510 B = 8273.258971 C = 8653.425377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.041 3.959 3 C -0.265 4.265 4 S 0.141 5.859 5 C 0.044 3.956 6 C -0.040 4.040 7 C -0.091 4.091 8 C 0.064 3.936 9 N -0.690 5.690 10 C 0.214 3.786 11 H -0.030 1.030 12 C -0.113 4.113 13 C -0.541 4.541 14 H 0.058 0.942 15 C 0.013 3.987 16 N -0.918 5.918 17 Si 0.963 3.037 18 H -0.275 1.275 19 H -0.268 1.268 20 H -0.282 1.282 21 N -0.505 5.505 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.098 0.902 25 H 0.204 0.796 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.015 0.985 31 H 0.067 0.933 32 H 0.331 0.669 33 H 0.025 0.975 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.270 17.212 8.726 22.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 C -0.404 4.404 4 S 0.397 5.603 5 C -0.233 4.233 6 C -0.081 4.081 7 C -0.131 4.131 8 C -0.066 4.066 9 N -0.320 5.320 10 C 0.105 3.895 11 H -0.013 1.013 12 C -0.172 4.172 13 C -0.579 4.579 14 H 0.077 0.923 15 C -0.187 4.187 16 N -0.557 5.557 17 Si 0.789 3.211 18 H -0.201 1.201 19 H -0.193 1.193 20 H -0.207 1.207 21 N -0.221 5.221 22 H 0.098 0.902 23 H 0.087 0.913 24 H 0.116 0.884 25 H 0.221 0.779 26 H 0.109 0.891 27 H 0.123 0.877 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.903 17.594 8.694 22.450 hybrid contribution -1.294 -1.558 -0.474 2.080 sum -12.197 16.036 8.220 21.760 Atomic orbital electron populations 1.20434 0.85452 1.04091 1.03550 1.20822 0.99664 0.86532 1.01992 1.27181 0.94843 1.04880 1.13455 1.83911 1.07583 1.01623 1.67231 1.27155 0.93960 0.99504 1.02709 1.20254 0.95970 0.93722 0.98152 1.21364 0.98293 0.98252 0.95191 1.21922 0.98204 0.96060 0.90402 1.60644 1.16767 1.41982 1.12638 1.18929 0.90090 0.86193 0.94243 1.01289 1.21543 0.99271 0.99139 0.97242 1.21623 1.20180 1.12481 1.03655 0.92342 1.25750 0.94696 0.97916 1.00307 1.70025 1.22808 1.26417 1.36448 0.85476 0.77471 0.78561 0.79629 1.20111 1.19257 1.20720 1.66169 1.05377 1.33188 1.17396 0.90151 0.91323 0.88364 0.77874 0.89083 0.87704 0.91014 0.92642 0.96659 0.91424 0.85203 0.95630 0.92473 0.95337 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.31 71.24 0.73 -0.41 16 2 C 0.04 0.89 6.74 41.52 0.28 1.17 16 3 C -0.26 -4.66 11.13 66.77 0.74 -3.92 16 4 S 0.14 2.73 23.18 -56.49 -1.31 1.42 16 5 C 0.04 1.08 6.64 88.52 0.59 1.67 16 6 C -0.04 -0.94 5.80 29.85 0.17 -0.77 16 7 C -0.09 -2.59 5.46 30.59 0.17 -2.42 16 8 C 0.06 2.24 5.48 86.30 0.47 2.72 16 9 N -0.69 -29.85 6.30 -495.44 -3.12 -32.97 16 10 C 0.21 11.14 2.60 44.17 0.11 11.26 16 11 H -0.03 -1.74 7.80 -2.38 -0.02 -1.76 16 12 C -0.11 -5.75 9.19 71.98 0.66 -5.08 16 13 C -0.54 -30.34 8.59 25.60 0.22 -30.12 16 14 H 0.06 3.21 7.62 -2.91 -0.02 3.19 16 15 C 0.01 0.70 5.30 84.66 0.45 1.15 16 16 N -0.92 -53.44 11.32 21.45 0.24 -53.20 16 17 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 N -0.51 -13.61 10.53 -179.40 -1.89 -15.50 16 22 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 24 H 0.10 0.93 8.12 -2.39 -0.02 0.91 16 25 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 26 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.02 0.56 8.06 -2.39 -0.02 0.54 16 31 H 0.07 2.33 7.44 -2.39 -0.02 2.31 16 32 H 0.33 14.13 8.22 -89.70 -0.74 13.40 16 33 H 0.02 1.13 7.45 -2.39 -0.02 1.11 16 34 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 35 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -64.34 313.58 0.88 -63.47 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.32 Total: 15.59 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 4.60 Total: -24.76 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -4.77 Total: -101.66 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.31 Total: 1.42 kcal Total: -64.34 0.88 -63.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068616781.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.204 kcal (2) G-P(sol) polarization free energy of solvation -64.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds