Wall clock time and date at job start Mon Mar 30 2020 06:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.71907 * 2 1 4 4 C 1.53546 * 109.72042 * 239.38175 * 2 1 3 5 5 N 1.47033 * 108.23787 * 183.70237 * 4 2 1 6 6 C 1.36801 * 120.57351 * 225.07143 * 5 4 2 7 7 H 1.07998 * 120.00069 * 154.80335 * 6 5 4 8 8 C 1.38727 * 120.00240 * 334.79481 * 6 5 4 9 9 N 1.31643 * 119.99802 * 343.29936 * 8 6 5 10 10 Si 1.86801 * 120.00301 * 163.28771 * 8 6 5 11 11 H 1.48509 * 109.46779 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47104 * 120.00421 * 10 8 6 13 13 H 1.48500 * 109.47284 * 240.00868 * 10 8 6 14 14 C 1.39671 * 118.85600 * 45.09237 * 5 4 2 15 15 C 1.38851 * 120.24320 * 163.66648 * 14 5 4 16 16 C 1.38314 * 119.87160 * 180.18108 * 15 14 5 17 17 F 1.35094 * 119.89624 * 179.73720 * 16 15 14 18 18 C 1.38771 * 120.19984 * 359.44175 * 16 15 14 19 19 F 1.35097 * 119.89283 * 180.32940 * 18 16 15 20 20 C 1.38458 * 120.20557 * 0.34708 * 18 16 15 21 21 C 1.38574 * 119.90209 * 359.97305 * 20 18 16 22 22 N 1.40129 * 120.24159 * 179.87273 * 21 20 18 23 23 H 1.08997 * 109.47672 * 180.61089 * 1 2 3 24 24 H 1.09000 * 109.47350 * 300.61654 * 1 2 3 25 25 H 1.08999 * 109.46835 * 60.60973 * 1 2 3 26 26 H 1.09005 * 109.70965 * 64.02092 * 4 2 1 27 27 H 1.09004 * 109.71421 * 303.39310 * 4 2 1 28 28 H 0.97001 * 119.99910 * 185.02675 * 9 8 6 29 29 H 1.08000 * 120.06385 * 359.87746 * 15 14 5 30 30 H 1.08003 * 120.04866 * 179.97438 * 20 18 16 31 31 H 0.97010 * 120.62374 * 343.51834 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8978 1.0261 0.0000 4 6 2.0481 -0.7362 -1.2439 5 7 3.5152 -0.7949 -1.1661 6 6 4.2822 -0.5063 -2.2614 7 1 5.2951 -0.1539 -2.1337 8 6 3.7591 -0.6664 -3.5363 9 7 2.6745 -1.3903 -3.7165 10 14 4.5936 0.1455 -4.9971 11 1 5.7858 0.8981 -4.5307 12 1 5.0148 -0.8959 -5.9683 13 1 3.6438 1.0795 -5.6536 14 6 4.1123 -1.1509 0.0454 15 6 5.4433 -1.5446 0.0800 16 6 6.0258 -1.8991 1.2834 17 9 7.3193 -2.2873 1.3168 18 6 5.2872 -1.8513 2.4572 19 9 5.8643 -2.1926 3.6301 20 6 3.9607 -1.4554 2.4300 21 6 3.3689 -1.1052 1.2270 22 7 2.0262 -0.7060 1.1908 23 1 -0.3634 -1.0275 0.0110 24 1 -0.3634 0.5234 0.8844 25 1 -0.3633 0.5043 -0.8954 26 1 1.7490 -0.1958 -2.1421 27 1 1.6405 -1.7468 -1.2694 28 1 2.3502 -1.5628 -4.6143 29 1 6.0214 -1.5787 -0.8317 30 1 3.3882 -1.4195 3.3451 31 1 1.4352 -0.8914 1.9374 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076928242.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:28 Heat of formation + Delta-G solvation = -49.374353 kcal Electronic energy + Delta-G solvation = -18871.061373 eV Core-core repulsion = 15595.407758 eV Total energy + Delta-G solvation = -3275.653614 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.39692 -47.47926 -39.36040 -35.86069 -34.98185 -31.93871 -30.96931 -28.80994 -26.78453 -26.46195 -23.66700 -21.95775 -21.82954 -19.38267 -17.77801 -17.22093 -16.68251 -15.96387 -15.46160 -15.25256 -14.84299 -14.46400 -14.12307 -13.97045 -13.86520 -13.19823 -13.06233 -12.93817 -12.37935 -12.07890 -11.86513 -11.67467 -11.49422 -11.22072 -11.06312 -10.74717 -10.62580 -10.43331 -10.11839 -9.38769 -9.01362 -8.62603 -7.29127 -6.58454 -6.32904 -3.86337 2.12619 2.17746 3.04869 3.11712 3.16190 3.87246 3.99822 4.38783 4.61506 4.87899 5.11888 5.35826 5.39192 5.51259 5.59527 5.61587 5.95122 6.13162 6.16889 6.27445 6.34037 6.44013 6.72714 6.79623 6.99250 7.03199 7.03540 7.24660 7.64940 7.75740 8.00942 8.37179 8.46290 9.08099 9.44685 10.46504 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.008727 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.539709 B = 3207.785010 C = 4501.014864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.127 3.873 3 H 0.060 0.940 4 C 0.135 3.865 5 N -0.440 5.440 6 C -0.301 4.301 7 H 0.097 0.903 8 C 0.028 3.972 9 N -0.871 5.871 10 Si 0.926 3.074 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.177 3.823 15 C -0.204 4.204 16 C 0.080 3.920 17 F -0.150 7.150 18 C -0.024 4.024 19 F -0.155 7.155 20 C -0.154 4.154 21 C 0.130 3.870 22 N -0.750 5.750 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.057 0.943 28 H 0.272 0.728 29 H 0.136 0.864 30 H 0.123 0.877 31 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.773 2.350 4.780 6.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.020 3.980 3 H 0.078 0.922 4 C 0.010 3.990 5 N -0.126 5.126 6 C -0.429 4.429 7 H 0.115 0.885 8 C -0.176 4.176 9 N -0.507 5.507 10 Si 0.752 3.248 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.204 1.204 14 C 0.059 3.941 15 C -0.232 4.232 16 C 0.057 3.943 17 F -0.129 7.129 18 C -0.049 4.049 19 F -0.135 7.135 20 C -0.180 4.180 21 C 0.026 3.974 22 N -0.385 5.385 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.118 0.882 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.154 0.846 30 H 0.141 0.859 31 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -4.057 2.502 4.125 6.303 hybrid contribution 0.427 0.009 -0.325 0.536 sum -3.630 2.512 3.800 5.824 Atomic orbital electron populations 1.21890 0.94437 1.02434 1.02113 1.21623 0.93678 0.95738 0.86939 0.92208 1.21926 0.80776 1.00107 0.96174 1.42589 1.04079 1.59747 1.06224 1.19644 0.98953 1.40938 0.83357 0.88543 1.25396 0.96898 0.96263 0.99082 1.70022 1.22902 1.34513 1.23223 0.85850 0.79288 0.79116 0.80523 1.19044 1.20522 1.20422 1.17371 0.92266 0.98360 0.86153 1.19978 0.95699 1.11282 0.96198 1.17169 0.78567 1.05100 0.93423 1.91384 1.34859 1.89307 1.97332 1.16671 0.92540 1.15739 0.79935 1.91347 1.84823 1.91415 1.45880 1.19755 0.93026 1.08754 0.96428 1.16925 0.85735 1.03423 0.91319 1.44448 1.07512 1.66307 1.20279 0.92041 0.92584 0.91142 0.88197 0.92459 0.91794 0.84575 0.85904 0.77413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.40 37.16 0.35 -1.59 16 2 C 0.13 2.15 3.71 -67.34 -0.25 1.90 16 3 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.14 2.85 4.48 -3.47 -0.02 2.84 16 5 N -0.44 -10.39 3.00 -112.23 -0.34 -10.73 16 6 C -0.30 -7.44 8.71 -15.15 -0.13 -7.57 16 7 H 0.10 2.37 7.03 -52.49 -0.37 2.00 16 8 C 0.03 0.69 4.94 -17.45 -0.09 0.60 16 9 N -0.87 -21.66 11.13 55.49 0.62 -21.04 16 10 Si 0.93 18.94 29.59 -169.99 -5.03 13.91 16 11 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 12 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 13 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 14 C 0.18 4.00 6.34 -83.52 -0.53 3.47 16 15 C -0.20 -4.59 9.20 -39.33 -0.36 -4.95 16 16 C 0.08 1.72 7.30 -39.36 -0.29 1.43 16 17 F -0.15 -3.20 17.17 2.25 0.04 -3.17 16 18 C -0.02 -0.50 7.30 -39.30 -0.29 -0.79 16 19 F -0.16 -3.16 17.17 2.25 0.04 -3.12 16 20 C -0.15 -2.91 9.91 -39.38 -0.39 -3.30 16 21 C 0.13 2.59 6.53 -83.40 -0.54 2.05 16 22 N -0.75 -12.72 5.62 -51.30 -0.29 -13.01 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.10 2.23 6.36 -51.93 -0.33 1.90 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.27 6.41 8.32 -40.82 -0.34 6.07 16 29 H 0.14 3.09 6.79 -52.49 -0.36 2.74 16 30 H 0.12 1.98 8.06 -52.48 -0.42 1.55 16 31 H 0.39 5.51 8.65 -40.82 -0.35 5.15 16 LS Contribution 268.73 15.07 4.05 4.05 Total: -1.00 -26.19 268.73 -6.52 -32.72 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -3.08 Total: 6.30 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -2.53 Total: -5.91 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.01 Total: -44.78 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.08 Total: -6.28 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.19 -6.52 -32.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076928242.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.658 kcal (2) G-P(sol) polarization free energy of solvation -26.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds