Wall clock time and date at job start Mon Mar 30 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46894 * 111.00557 * 2 1 4 4 C 1.52993 * 109.47277 * 66.04427 * 3 2 1 5 5 C 1.50700 * 109.47325 * 180.02562 * 4 3 2 6 6 H 1.07996 * 120.00256 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99999 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00064 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99808 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47225 * 90.00298 * 9 7 5 11 11 H 1.48502 * 109.46683 * 210.00082 * 9 7 5 12 12 H 1.48500 * 109.47136 * 329.99950 * 9 7 5 13 13 C 1.46908 * 110.99588 * 236.04597 * 2 1 3 14 14 C 1.50705 * 109.46795 * 293.95479 * 13 2 1 15 15 C 1.38705 * 120.40098 * 90.00428 * 14 13 2 16 16 C 1.38565 * 118.43594 * 180.02562 * 15 14 13 17 17 C 1.38398 * 119.14885 * 359.97438 * 16 15 14 18 18 Cl 1.73605 * 119.63252 * 180.02562 * 17 16 15 19 19 N 1.31943 * 120.73083 * 359.97438 * 17 16 15 20 20 C 1.31905 * 121.70686 * 0.04743 * 19 17 16 21 21 H 1.08996 * 109.47667 * 183.95378 * 1 2 3 22 22 H 1.09006 * 109.47198 * 303.95653 * 1 2 3 23 23 H 1.09003 * 109.46925 * 63.94858 * 1 2 3 24 24 H 1.08998 * 109.47203 * 186.04984 * 3 2 1 25 25 H 1.09002 * 109.47182 * 306.04475 * 3 2 1 26 26 H 1.08998 * 109.47459 * 300.00400 * 4 3 2 27 27 H 1.09002 * 109.46975 * 59.99921 * 4 3 2 28 28 H 0.96997 * 119.99817 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.46546 * 173.96015 * 13 2 1 30 30 H 1.08993 * 109.47316 * 53.95253 * 13 2 1 31 31 H 1.08001 * 120.78816 * 359.97438 * 15 14 13 32 32 H 1.08000 * 120.42478 * 179.72686 * 16 15 14 33 33 H 1.08007 * 119.60917 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0574 1.3182 5 6 2.1712 3.4644 1.3179 6 1 2.7186 3.8327 0.4629 7 6 1.9661 4.2817 2.4093 8 7 1.2990 3.8334 3.4504 9 14 2.6357 6.0256 2.4093 10 1 1.6185 6.9464 1.8413 11 1 2.9512 6.4346 3.8015 12 1 3.8696 6.0820 1.5850 13 6 1.9953 -0.7660 -1.1377 14 6 1.6367 -2.2205 -0.9729 15 6 0.4490 -2.7138 -1.4924 16 6 0.1597 -4.0575 -1.3168 17 6 1.0596 -4.8572 -0.6340 18 17 0.7101 -6.5425 -0.4073 19 7 2.1806 -4.3530 -0.1543 20 6 2.4871 -3.0787 -0.3030 21 1 -0.3634 -1.0251 0.0709 22 1 -0.3634 0.5740 0.8524 23 1 -0.3633 0.4513 -0.9233 24 1 3.0798 1.3442 -0.1083 25 1 1.5612 1.9273 -0.8309 26 1 0.5473 2.0845 1.4265 27 1 2.0659 1.5014 2.1491 28 1 1.1551 4.4082 4.2183 29 1 3.0796 -0.6612 -1.1756 30 1 1.5610 -0.3874 -2.0628 31 1 -0.2347 -2.0658 -2.0206 32 1 -0.7581 -4.4746 -1.7042 33 1 3.4139 -2.7018 0.1038 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080913022.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:08 Heat of formation + Delta-G solvation = 24.379871 kcal Electronic energy + Delta-G solvation = -15857.416977 eV Core-core repulsion = 13136.758266 eV Total energy + Delta-G solvation = -2720.658711 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.45582 -37.41177 -36.65808 -33.49381 -32.61175 -31.72110 -29.41754 -27.17736 -25.44762 -23.87481 -23.27346 -21.41406 -19.97979 -17.53097 -16.87952 -16.49889 -15.52327 -15.20839 -14.59491 -14.51741 -14.26540 -14.10197 -13.48288 -13.07847 -12.79132 -12.24380 -12.07859 -11.76970 -11.50597 -11.40003 -11.25013 -11.07612 -10.92102 -10.58297 -10.05685 -9.91986 -9.74792 -9.46565 -9.18459 -8.93908 -8.36205 -7.86445 -6.02456 -4.05325 0.78217 1.02613 1.67187 3.29988 3.36599 3.39365 3.47699 4.31286 4.38730 4.53442 4.64223 4.75964 4.80330 4.93860 5.31562 5.33535 5.56461 5.62847 5.71108 5.73633 5.83724 6.05592 6.18482 6.33145 6.38575 6.43839 6.88649 7.36732 7.43063 7.59873 7.72704 7.84139 8.03559 8.38960 9.01906 9.58586 11.08823 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.053436 B = 0.003453 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.865929 B = 8106.299788 C = 8186.791458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.537 5.537 3 C 0.063 3.937 4 C 0.028 3.972 5 C -0.524 4.524 6 H 0.054 0.946 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.092 3.908 14 C -0.113 4.113 15 C -0.059 4.059 16 C -0.156 4.156 17 C 0.168 3.832 18 Cl -0.041 7.041 19 N -0.479 5.479 20 C 0.138 3.862 21 H 0.055 0.945 22 H 0.081 0.919 23 H 0.019 0.981 24 H 0.063 0.937 25 H 0.022 0.978 26 H 0.017 0.983 27 H 0.025 0.975 28 H 0.261 0.739 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.240 -15.457 -11.166 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.261 5.261 3 C -0.063 4.063 4 C -0.010 4.010 5 C -0.562 4.562 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.036 4.036 14 C -0.115 4.115 15 C -0.086 4.086 16 C -0.176 4.176 17 C 0.004 3.996 18 Cl -0.013 7.013 19 N -0.190 5.190 20 C -0.019 4.019 21 H 0.074 0.926 22 H 0.100 0.900 23 H 0.038 0.962 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.590 -16.325 -10.089 19.257 hybrid contribution -0.619 1.738 -1.005 2.101 sum -2.209 -14.587 -11.094 18.460 Atomic orbital electron populations 1.22465 0.87959 1.01002 1.01206 1.62143 1.07841 1.16174 1.39933 1.22389 0.98672 0.84604 1.00669 1.19104 0.96962 0.94063 0.90844 1.21175 1.35363 0.97727 1.01975 0.92769 1.24997 0.95272 0.98490 0.95540 1.69970 1.40737 1.36413 1.06013 0.86593 0.79322 0.84804 0.77259 1.20725 1.21179 1.19863 1.21024 1.01124 0.88198 0.93289 1.21006 0.95115 0.97638 0.97772 1.21547 0.95957 0.94303 0.96760 1.21771 1.00671 0.94010 1.01195 1.21602 0.92707 0.87603 0.97735 1.98394 1.93530 1.13402 1.95936 1.67028 1.17629 1.15351 1.18959 1.22624 0.99446 0.86372 0.93462 0.92588 0.90023 0.96226 0.91862 0.95992 0.96442 0.95645 0.92951 0.89467 0.93944 0.84050 0.83943 0.81492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 8.97 60.06 0.54 0.88 16 2 N -0.54 -9.04 4.75 -244.37 -1.16 -10.20 16 3 C 0.06 1.25 4.90 -3.83 -0.02 1.23 16 4 C 0.03 0.70 4.90 -27.89 -0.14 0.56 16 5 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 6 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.09 1.19 5.14 -4.97 -0.03 1.17 16 14 C -0.11 -1.36 4.89 -104.48 -0.51 -1.87 16 15 C -0.06 -0.62 8.15 -39.29 -0.32 -0.94 16 16 C -0.16 -1.61 9.88 -39.40 -0.39 -2.00 16 17 C 0.17 2.07 7.27 -17.44 -0.13 1.94 16 18 Cl -0.04 -0.45 29.11 -51.86 -1.51 -1.96 16 19 N -0.48 -6.61 10.34 -10.36 -0.11 -6.72 16 20 C 0.14 1.76 10.86 -17.55 -0.19 1.57 16 21 H 0.06 0.78 6.17 -51.93 -0.32 0.46 16 22 H 0.08 1.48 6.30 -51.93 -0.33 1.16 16 23 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 25 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 26 H 0.02 0.46 6.47 -51.93 -0.34 0.13 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.09 1.05 7.88 -51.93 -0.41 0.64 16 30 H 0.04 0.51 8.07 -51.93 -0.42 0.09 16 31 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.17 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 295.34 15.07 4.45 4.45 Total: -1.00 -30.38 295.34 -8.50 -38.88 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -4.30 Total: -4.21 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -1.59 Total: -10.73 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.53 Total: -42.76 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.51 Total: -1.96 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.38 -8.50 -38.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080913022.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.260 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds