Wall clock time and date at job start Mon Mar 30 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46894 * 111.00557 * 2 1 4 4 C 1.52993 * 109.47277 * 66.04427 * 3 2 1 5 5 C 1.50700 * 109.47325 * 180.02562 * 4 3 2 6 6 H 1.07996 * 120.00256 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99999 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00064 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99808 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47225 * 90.00298 * 9 7 5 11 11 H 1.48502 * 109.46683 * 210.00082 * 9 7 5 12 12 H 1.48500 * 109.47136 * 329.99950 * 9 7 5 13 13 C 1.46908 * 110.99588 * 236.04597 * 2 1 3 14 14 C 1.50705 * 109.46795 * 293.95479 * 13 2 1 15 15 C 1.38705 * 120.40098 * 90.00428 * 14 13 2 16 16 C 1.38565 * 118.43594 * 180.02562 * 15 14 13 17 17 C 1.38398 * 119.14885 * 359.97438 * 16 15 14 18 18 Cl 1.73605 * 119.63252 * 180.02562 * 17 16 15 19 19 N 1.31943 * 120.73083 * 359.97438 * 17 16 15 20 20 C 1.31905 * 121.70686 * 0.04743 * 19 17 16 21 21 H 1.08996 * 109.47667 * 183.95378 * 1 2 3 22 22 H 1.09006 * 109.47198 * 303.95653 * 1 2 3 23 23 H 1.09003 * 109.46925 * 63.94858 * 1 2 3 24 24 H 1.08998 * 109.47203 * 186.04984 * 3 2 1 25 25 H 1.09002 * 109.47182 * 306.04475 * 3 2 1 26 26 H 1.08998 * 109.47459 * 300.00400 * 4 3 2 27 27 H 1.09002 * 109.46975 * 59.99921 * 4 3 2 28 28 H 0.96997 * 119.99817 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.46546 * 173.96015 * 13 2 1 30 30 H 1.08993 * 109.47316 * 53.95253 * 13 2 1 31 31 H 1.08001 * 120.78816 * 359.97438 * 15 14 13 32 32 H 1.08000 * 120.42478 * 179.72686 * 16 15 14 33 33 H 1.08007 * 119.60917 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0574 1.3182 5 6 2.1712 3.4644 1.3179 6 1 2.7186 3.8327 0.4629 7 6 1.9661 4.2817 2.4093 8 7 1.2990 3.8334 3.4504 9 14 2.6357 6.0256 2.4093 10 1 1.6185 6.9464 1.8413 11 1 2.9512 6.4346 3.8015 12 1 3.8696 6.0820 1.5850 13 6 1.9953 -0.7660 -1.1377 14 6 1.6367 -2.2205 -0.9729 15 6 0.4490 -2.7138 -1.4924 16 6 0.1597 -4.0575 -1.3168 17 6 1.0596 -4.8572 -0.6340 18 17 0.7101 -6.5425 -0.4073 19 7 2.1806 -4.3530 -0.1543 20 6 2.4871 -3.0787 -0.3030 21 1 -0.3634 -1.0251 0.0709 22 1 -0.3634 0.5740 0.8524 23 1 -0.3633 0.4513 -0.9233 24 1 3.0798 1.3442 -0.1083 25 1 1.5612 1.9273 -0.8309 26 1 0.5473 2.0845 1.4265 27 1 2.0659 1.5014 2.1491 28 1 1.1551 4.4082 4.2183 29 1 3.0796 -0.6612 -1.1756 30 1 1.5610 -0.3874 -2.0628 31 1 -0.2347 -2.0658 -2.0206 32 1 -0.7581 -4.4746 -1.7042 33 1 3.4139 -2.7018 0.1038 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080913022.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:08 Heat of formation + Delta-G solvation = 5.033978 kcal Electronic energy + Delta-G solvation = -15858.255878 eV Core-core repulsion = 13136.758266 eV Total energy + Delta-G solvation = -2721.497612 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.37126 -38.67639 -37.59173 -35.30751 -33.83952 -32.80034 -31.13361 -28.32132 -27.11550 -24.91319 -24.64032 -22.61250 -21.56427 -18.58369 -18.39386 -17.78838 -16.68537 -16.52762 -16.30591 -15.91193 -15.32760 -15.15718 -14.42206 -14.36309 -14.17628 -14.13402 -13.29875 -13.04084 -12.84117 -12.72447 -12.57786 -12.48493 -12.33350 -12.23660 -11.78347 -11.35888 -11.24659 -10.91380 -10.63049 -10.52057 -9.89589 -9.16383 -8.18222 -6.29241 -0.12445 0.16707 0.79471 1.41954 1.43203 1.54236 2.41118 2.54692 3.15628 3.25642 3.48920 3.72293 3.87399 3.95232 4.03116 4.31073 4.46492 4.49683 4.62903 4.69008 4.77546 4.84752 4.87733 5.04503 5.13667 5.18874 5.48233 5.51078 5.68610 5.80463 6.10206 6.26566 6.33961 6.68959 6.89096 7.40045 8.93799 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.053436 B = 0.003453 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.865929 B = 8106.299788 C = 8186.791458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.553 5.553 3 C 0.081 3.919 4 C 0.034 3.966 5 C -0.542 4.542 6 H 0.063 0.937 7 C 0.000 4.000 8 N -0.933 5.933 9 Si 0.965 3.035 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.261 1.261 13 C 0.097 3.903 14 C -0.119 4.119 15 C -0.054 4.054 16 C -0.148 4.148 17 C 0.152 3.848 18 Cl -0.036 7.036 19 N -0.507 5.507 20 C 0.125 3.875 21 H 0.075 0.925 22 H 0.047 0.953 23 H 0.036 0.964 24 H 0.069 0.931 25 H 0.027 0.973 26 H -0.005 1.005 27 H -0.010 1.010 28 H 0.263 0.737 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.168 0.832 32 H 0.172 0.828 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 -15.267 -12.982 20.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.277 5.277 3 C -0.047 4.047 4 C -0.004 4.004 5 C -0.581 4.581 6 H 0.081 0.919 7 C -0.198 4.198 8 N -0.573 5.573 9 Si 0.789 3.211 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.185 1.185 13 C -0.031 4.031 14 C -0.122 4.122 15 C -0.080 4.080 16 C -0.169 4.169 17 C -0.012 4.012 18 Cl -0.008 7.008 19 N -0.218 5.218 20 C -0.031 4.031 21 H 0.094 0.906 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.087 0.913 25 H 0.046 0.954 26 H 0.013 0.987 27 H 0.008 0.992 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.185 0.815 32 H 0.189 0.811 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.742 -16.153 -11.926 20.154 hybrid contribution -0.607 1.574 -0.442 1.744 sum -2.348 -14.578 -12.368 19.262 Atomic orbital electron populations 1.22394 0.87424 1.01775 1.00540 1.61981 1.08506 1.14541 1.42701 1.21986 0.99084 0.86168 0.97417 1.18945 0.95059 0.93618 0.92747 1.21652 1.35229 0.98929 1.02276 0.91912 1.25965 0.95499 1.03199 0.95122 1.70115 1.42172 1.38201 1.06804 0.85451 0.79075 0.79146 0.77387 1.19812 1.21028 1.18545 1.21028 1.01623 0.88046 0.92361 1.20937 0.95879 0.96910 0.98446 1.21858 0.95498 0.94700 0.95977 1.22079 1.01069 0.93729 0.99982 1.21931 0.92909 0.88206 0.98147 1.98392 1.93413 1.13018 1.95943 1.66991 1.18792 1.15941 1.20084 1.22762 1.00061 0.86411 0.93915 0.90600 0.93423 0.94506 0.91280 0.95448 0.98720 0.99206 0.92865 0.88727 0.92031 0.81497 0.81088 0.81167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 8.97 127.69 1.15 1.96 16 2 N -0.55 -18.05 4.75 -927.06 -4.41 -22.46 16 3 C 0.08 3.16 4.90 86.30 0.42 3.58 16 4 C 0.03 1.75 4.90 29.85 0.15 1.90 16 5 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 6 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 7 C 0.00 0.00 5.46 84.66 0.46 0.46 16 8 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 9 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 13 C 0.10 2.30 5.14 85.56 0.44 2.74 16 14 C -0.12 -2.64 4.89 -19.77 -0.10 -2.74 16 15 C -0.05 -0.97 8.15 22.46 0.18 -0.79 16 16 C -0.15 -2.66 9.88 22.39 0.22 -2.44 16 17 C 0.15 3.52 7.27 84.71 0.62 4.14 16 18 Cl -0.04 -0.75 29.11 -2.72 -0.08 -0.83 16 19 N -0.51 -13.62 10.34 -186.69 -1.93 -15.55 16 20 C 0.13 3.09 10.86 84.66 0.92 4.01 16 21 H 0.08 1.97 6.17 -2.39 -0.01 1.96 16 22 H 0.05 1.76 6.30 -2.38 -0.02 1.75 16 23 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 2.60 7.93 -2.39 -0.02 2.59 16 25 H 0.03 1.04 8.12 -2.39 -0.02 1.02 16 26 H -0.01 -0.31 6.47 -2.39 -0.02 -0.32 16 27 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 28 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.09 2.09 7.88 -2.39 -0.02 2.07 16 30 H 0.06 1.26 8.07 -2.39 -0.02 1.24 16 31 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 32 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.17 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -66.13 295.34 1.68 -64.45 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 1.10 Total: 2.37 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 4.69 Total: -17.23 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -6.05 Total: -94.49 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -66.13 1.68 -64.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080913022.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.484 kcal (2) G-P(sol) polarization free energy of solvation -66.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds