Wall clock time and date at job start Mon Mar 30 2020 07:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47445 * 2 1 4 4 N 1.30458 * 122.56691 * 90.02343 * 3 2 1 5 5 C 1.30650 * 117.51028 * 179.97438 * 4 3 2 6 6 N 1.37612 * 125.12969 * 179.97438 * 5 4 3 7 7 C 1.46503 * 119.99777 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47236 * 89.99851 * 7 6 5 9 9 C 1.46500 * 119.99869 * 359.97438 * 6 5 4 10 10 C 1.53002 * 109.47004 * 270.00394 * 9 6 5 11 11 S 1.76079 * 109.74073 * 0.22181 * 5 4 3 12 12 C 1.38457 * 122.56430 * 270.00390 * 3 2 1 13 13 C 1.39913 * 126.07996 * 0.02562 * 12 3 2 14 14 H 1.07994 * 120.00136 * 353.63383 * 13 12 3 15 15 C 1.39904 * 119.99920 * 173.63181 * 13 12 3 16 16 N 1.31009 * 120.00104 * 6.56214 * 15 13 12 17 17 Si 1.86794 * 119.99944 * 186.55940 * 15 13 12 18 18 H 1.48500 * 109.47312 * 94.98985 * 17 15 13 19 19 H 1.48509 * 109.47315 * 214.98902 * 17 15 13 20 20 H 1.48497 * 109.47476 * 334.99077 * 17 15 13 21 21 H 1.08994 * 109.46902 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46697 * 300.00328 * 1 2 3 23 23 H 1.09001 * 109.46726 * 59.99851 * 1 2 3 24 24 H 1.09005 * 109.47310 * 239.99942 * 2 1 3 25 25 H 1.09000 * 109.47468 * 120.00116 * 2 1 3 26 26 H 1.08992 * 109.47071 * 329.99520 * 7 6 5 27 27 H 1.08997 * 109.46871 * 209.99503 * 7 6 5 28 28 H 1.09002 * 109.46896 * 59.99576 * 8 7 6 29 29 H 1.08991 * 109.47347 * 179.97438 * 8 7 6 30 30 H 1.09006 * 109.47007 * 299.99804 * 8 7 6 31 31 H 1.08998 * 109.47045 * 30.00034 * 9 6 5 32 32 H 1.08993 * 109.47020 * 150.00157 * 9 6 5 33 33 H 1.09003 * 109.47016 * 180.02562 * 10 9 6 34 34 H 1.08998 * 109.46926 * 299.99713 * 10 9 6 35 35 H 1.08993 * 109.47425 * 60.00011 * 10 9 6 36 36 H 0.97001 * 120.00031 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2669 2.0827 1.0995 5 6 2.7013 3.3095 0.9843 6 7 2.9973 4.1467 2.0356 7 6 3.4791 5.5058 1.7764 8 6 2.2872 6.4607 1.6854 9 6 2.8307 3.6789 3.4138 10 6 1.4130 3.9978 3.8928 11 16 2.8439 3.7325 -0.7190 12 6 2.2808 2.1234 -1.1669 13 6 2.1104 1.6433 -2.4700 14 1 1.8535 0.6073 -2.6344 15 6 2.2726 2.5053 -3.5599 16 7 2.7085 3.7261 -3.3703 17 14 1.8678 1.9155 -5.2854 18 1 0.4793 2.3125 -5.6313 19 1 2.8133 2.5285 -6.2527 20 1 1.9889 0.4367 -5.3443 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 4.0308 5.5226 0.8366 27 1 4.1349 5.8197 2.5884 28 1 1.7354 6.4438 2.6253 29 1 2.6456 7.4719 1.4930 30 1 1.6313 6.1468 0.8733 31 1 2.9942 2.6020 3.4543 32 1 3.5531 4.1805 4.0576 33 1 1.2892 3.6501 4.9184 34 1 1.2495 5.0747 3.8524 35 1 0.6905 3.4962 3.2490 36 1 2.8214 4.3236 -4.1261 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082426022.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:52 Heat of formation + Delta-G solvation = 12.204904 kcal Electronic energy + Delta-G solvation = -17104.010015 eV Core-core repulsion = 14520.700159 eV Total energy + Delta-G solvation = -2583.309856 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -37.87959 -36.40213 -33.88422 -31.96005 -31.30159 -29.23401 -28.37938 -24.89450 -23.03786 -22.58156 -22.33047 -19.69231 -18.41178 -17.08859 -15.93512 -15.75070 -14.49928 -14.18825 -13.97018 -13.53345 -12.94760 -12.88900 -12.74407 -12.60844 -12.23511 -11.96145 -11.75795 -11.62601 -11.44629 -11.16077 -11.00322 -10.93754 -10.66325 -10.62052 -10.40799 -10.18570 -9.88758 -9.75064 -9.04490 -8.41802 -7.74324 -7.36142 -6.88016 -6.43515 -4.15466 2.65364 2.97241 3.02945 3.16578 3.17741 3.74035 3.95637 4.18902 4.41230 5.14496 5.37287 5.62000 5.67666 5.82664 5.85947 5.97434 6.05707 6.14616 6.17802 6.18990 6.29680 6.51537 6.54197 6.65308 6.68570 6.77154 6.78980 6.94207 7.00705 7.21952 7.44377 7.74538 7.94798 8.13342 8.36412 8.59293 8.78588 9.95840 9.98706 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.007998 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.100760 B = 3500.213094 C = 4430.851340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.005 4.005 3 C -0.126 4.126 4 N -0.490 5.490 5 C 0.144 3.856 6 N -0.596 5.596 7 C 0.139 3.861 8 C -0.173 4.173 9 C 0.144 3.856 10 C -0.165 4.165 11 S 0.086 5.914 12 C -0.007 4.007 13 C -0.384 4.384 14 H 0.095 0.905 15 C 0.050 3.950 16 N -0.795 5.795 17 Si 0.930 3.070 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.259 1.259 21 H 0.034 0.966 22 H 0.043 0.957 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 2.752 4.358 5.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.045 4.045 3 C -0.257 4.257 4 N -0.210 5.210 5 C -0.219 4.219 6 N -0.320 5.320 7 C 0.014 3.986 8 C -0.232 4.232 9 C 0.018 3.982 10 C -0.225 4.225 11 S 0.335 5.665 12 C -0.130 4.130 13 C -0.420 4.420 14 H 0.113 0.887 15 C -0.168 4.168 16 N -0.423 5.423 17 Si 0.755 3.245 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.183 1.183 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.263 3.709 4.314 5.695 hybrid contribution -0.591 -0.867 -0.803 1.322 sum -0.329 2.841 3.512 4.529 Atomic orbital electron populations 1.21700 0.97429 0.98971 1.01378 1.19369 0.93706 0.91892 0.99560 1.19269 1.22257 0.98484 0.85663 1.65122 1.17647 1.05286 1.32915 1.24013 1.12766 0.92398 0.92703 1.44758 1.74669 1.10980 1.01585 1.21097 0.95080 0.81496 1.00897 1.22350 0.99951 0.98671 1.02220 1.20983 0.94874 1.00049 0.82309 1.22248 0.99479 1.00835 0.99888 1.85112 1.69648 1.16995 0.94761 1.22589 0.99834 0.93633 0.96962 1.18930 1.37043 0.97542 0.88493 0.88733 1.26072 0.93566 0.94462 1.02671 1.68925 1.33164 1.06096 1.34133 0.85880 0.79078 0.80134 0.79444 1.19309 1.20023 1.18294 0.94646 0.93764 0.92982 0.92715 0.93703 0.91420 0.91933 0.92896 0.92770 0.92071 0.90975 0.93001 0.93339 0.93409 0.92328 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.89 37.16 0.37 -2.36 16 2 C -0.01 -0.11 6.09 -27.88 -0.17 -0.28 16 3 C -0.13 -3.25 6.10 -83.09 -0.51 -3.75 16 4 N -0.49 -12.53 9.72 -9.32 -0.09 -12.62 16 5 C 0.14 3.47 7.90 -87.85 -0.69 2.77 16 6 N -0.60 -11.82 2.55 -174.47 -0.44 -12.27 16 7 C 0.14 2.31 6.15 -4.04 -0.02 2.29 16 8 C -0.17 -2.64 10.24 37.16 0.38 -2.26 16 9 C 0.14 2.50 6.28 -4.04 -0.03 2.47 16 10 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 11 S 0.09 2.17 19.04 -107.50 -2.05 0.12 16 12 C -0.01 -0.19 6.23 -38.87 -0.24 -0.43 16 13 C -0.38 -9.85 8.89 -38.33 -0.34 -10.19 16 14 H 0.09 2.32 6.81 -52.49 -0.36 1.96 16 15 C 0.05 1.21 5.49 -17.28 -0.09 1.12 16 16 N -0.79 -19.64 10.77 55.55 0.60 -19.04 16 17 Si 0.93 18.14 29.57 -169.99 -5.03 13.11 16 18 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 21 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.05 1.18 7.00 -51.93 -0.36 0.82 16 25 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.20 7.06 -51.93 -0.37 0.84 16 27 H 0.06 0.87 7.89 -51.93 -0.41 0.46 16 28 H 0.05 0.76 6.26 -51.93 -0.33 0.44 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.38 7.61 -51.93 -0.39 0.99 16 32 H 0.05 0.75 7.89 -51.93 -0.41 0.34 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.71 6.26 -51.93 -0.33 0.38 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.29 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 306.68 15.07 4.62 4.62 Total: -1.00 -28.21 306.68 -8.83 -37.03 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.47 Total: 1.93 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -0.97 Total: -12.88 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.06 Total: -43.93 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.05 Total: 0.12 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.21 -8.83 -37.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082426022.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.240 kcal (2) G-P(sol) polarization free energy of solvation -28.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds