Wall clock time and date at job start Mon Mar 30 2020 07:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47445 * 2 1 4 4 N 1.30458 * 122.56691 * 90.02343 * 3 2 1 5 5 C 1.30650 * 117.51028 * 179.97438 * 4 3 2 6 6 N 1.37612 * 125.12969 * 179.97438 * 5 4 3 7 7 C 1.46503 * 119.99777 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47236 * 89.99851 * 7 6 5 9 9 C 1.46500 * 119.99869 * 359.97438 * 6 5 4 10 10 C 1.53002 * 109.47004 * 270.00394 * 9 6 5 11 11 S 1.76079 * 109.74073 * 0.22181 * 5 4 3 12 12 C 1.38457 * 122.56430 * 270.00390 * 3 2 1 13 13 C 1.39913 * 126.07996 * 0.02562 * 12 3 2 14 14 H 1.07994 * 120.00136 * 353.63383 * 13 12 3 15 15 C 1.39904 * 119.99920 * 173.63181 * 13 12 3 16 16 N 1.31009 * 120.00104 * 6.56214 * 15 13 12 17 17 Si 1.86794 * 119.99944 * 186.55940 * 15 13 12 18 18 H 1.48500 * 109.47312 * 94.98985 * 17 15 13 19 19 H 1.48509 * 109.47315 * 214.98902 * 17 15 13 20 20 H 1.48497 * 109.47476 * 334.99077 * 17 15 13 21 21 H 1.08994 * 109.46902 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46697 * 300.00328 * 1 2 3 23 23 H 1.09001 * 109.46726 * 59.99851 * 1 2 3 24 24 H 1.09005 * 109.47310 * 239.99942 * 2 1 3 25 25 H 1.09000 * 109.47468 * 120.00116 * 2 1 3 26 26 H 1.08992 * 109.47071 * 329.99520 * 7 6 5 27 27 H 1.08997 * 109.46871 * 209.99503 * 7 6 5 28 28 H 1.09002 * 109.46896 * 59.99576 * 8 7 6 29 29 H 1.08991 * 109.47347 * 179.97438 * 8 7 6 30 30 H 1.09006 * 109.47007 * 299.99804 * 8 7 6 31 31 H 1.08998 * 109.47045 * 30.00034 * 9 6 5 32 32 H 1.08993 * 109.47020 * 150.00157 * 9 6 5 33 33 H 1.09003 * 109.47016 * 180.02562 * 10 9 6 34 34 H 1.08998 * 109.46926 * 299.99713 * 10 9 6 35 35 H 1.08993 * 109.47425 * 60.00011 * 10 9 6 36 36 H 0.97001 * 120.00031 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2669 2.0827 1.0995 5 6 2.7013 3.3095 0.9843 6 7 2.9973 4.1467 2.0356 7 6 3.4791 5.5058 1.7764 8 6 2.2872 6.4607 1.6854 9 6 2.8307 3.6789 3.4138 10 6 1.4130 3.9978 3.8928 11 16 2.8439 3.7325 -0.7190 12 6 2.2808 2.1234 -1.1669 13 6 2.1104 1.6433 -2.4700 14 1 1.8535 0.6073 -2.6344 15 6 2.2726 2.5053 -3.5599 16 7 2.7085 3.7261 -3.3703 17 14 1.8678 1.9155 -5.2854 18 1 0.4793 2.3125 -5.6313 19 1 2.8133 2.5285 -6.2527 20 1 1.9889 0.4367 -5.3443 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 4.0308 5.5226 0.8366 27 1 4.1349 5.8197 2.5884 28 1 1.7354 6.4438 2.6253 29 1 2.6456 7.4719 1.4930 30 1 1.6313 6.1468 0.8733 31 1 2.9942 2.6020 3.4543 32 1 3.5531 4.1805 4.0576 33 1 1.2892 3.6501 4.9184 34 1 1.2495 5.0747 3.8524 35 1 0.6905 3.4962 3.2490 36 1 2.8214 4.3236 -4.1261 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082426022.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:52 Heat of formation + Delta-G solvation = -2.136723 kcal Electronic energy + Delta-G solvation = -17104.631914 eV Core-core repulsion = 14520.700159 eV Total energy + Delta-G solvation = -2583.931756 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.66478 -38.01421 -35.70769 -33.67524 -32.64074 -30.95437 -30.00158 -26.64328 -24.80244 -24.07838 -23.84519 -21.31137 -20.26914 -18.87265 -17.66579 -17.48877 -16.15996 -15.72794 -15.50193 -15.10354 -14.58403 -14.41844 -14.31644 -14.18983 -13.92087 -13.49433 -13.26908 -13.06539 -13.01323 -12.77036 -12.64934 -12.41227 -12.34523 -12.06271 -11.95980 -11.63626 -11.52710 -11.48159 -10.93356 -10.16370 -9.65085 -9.26677 -8.69498 -8.26783 -6.03548 0.85772 1.30658 1.38714 1.53546 1.54577 1.93800 2.20784 2.54344 2.63703 3.24697 4.04607 4.29190 4.36533 4.37515 4.50547 4.58102 4.61568 4.65408 4.81084 4.82949 4.90569 4.94382 5.04845 5.08713 5.14917 5.19030 5.25957 5.37530 5.46844 5.52390 5.63375 5.92700 6.14095 6.46528 6.56509 6.73154 7.00308 8.07277 8.18963 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.007998 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.100760 B = 3500.213094 C = 4430.851340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.005 4.005 3 C -0.146 4.146 4 N -0.515 5.515 5 C 0.155 3.845 6 N -0.597 5.597 7 C 0.131 3.869 8 C -0.164 4.164 9 C 0.140 3.860 10 C -0.154 4.154 11 S 0.067 5.933 12 C -0.044 4.044 13 C -0.413 4.413 14 H 0.097 0.903 15 C 0.012 3.988 16 N -0.822 5.822 17 Si 1.002 2.998 18 H -0.264 1.264 19 H -0.265 1.265 20 H -0.254 1.254 21 H 0.070 0.930 22 H 0.033 0.967 23 H 0.037 0.963 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.026 0.974 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.020 0.980 36 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 3.317 4.924 5.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.045 4.045 3 C -0.276 4.276 4 N -0.236 5.236 5 C -0.210 4.210 6 N -0.322 5.322 7 C 0.008 3.992 8 C -0.223 4.223 9 C 0.014 3.986 10 C -0.213 4.213 11 S 0.316 5.684 12 C -0.167 4.167 13 C -0.449 4.449 14 H 0.115 0.885 15 C -0.203 4.203 16 N -0.451 5.451 17 Si 0.822 3.178 18 H -0.188 1.188 19 H -0.190 1.190 20 H -0.177 1.177 21 H 0.089 0.911 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.268 4.289 4.909 6.524 hybrid contribution -0.528 -0.948 -0.817 1.358 sum -0.260 3.342 4.092 5.289 Atomic orbital electron populations 1.21568 0.95682 1.00870 1.00125 1.19419 0.95180 0.90199 0.99661 1.19834 1.22250 0.99888 0.85616 1.65228 1.19460 1.06042 1.32872 1.24459 1.10608 0.92411 0.93501 1.45207 1.73731 1.11625 1.01620 1.21381 0.96050 0.80128 1.01669 1.22251 0.98835 0.99711 1.01468 1.21185 0.96833 0.99159 0.81421 1.22130 0.97332 1.01322 1.00553 1.84950 1.70285 1.17137 0.96077 1.22953 1.01371 0.94467 0.97942 1.19173 1.38598 0.98143 0.88983 0.88526 1.26995 0.92680 0.94293 1.06364 1.68972 1.33437 1.07060 1.35599 0.84827 0.78944 0.79810 0.74183 1.18849 1.18978 1.17710 0.91090 0.94771 0.94356 0.92623 0.93364 0.93063 0.88011 0.91734 0.89886 0.95468 0.93375 0.89045 0.90546 0.92031 0.96065 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.89 71.98 0.71 -4.24 16 2 C 0.00 -0.21 6.09 29.85 0.18 -0.02 16 3 C -0.15 -7.75 6.10 42.82 0.26 -7.49 16 4 N -0.52 -26.96 9.72 -183.39 -1.78 -28.74 16 5 C 0.16 7.58 7.90 179.38 1.42 9.00 16 6 N -0.60 -23.18 2.55 -705.89 -1.80 -24.98 16 7 C 0.13 4.11 6.15 86.38 0.53 4.64 16 8 C -0.16 -4.69 10.24 71.98 0.74 -3.96 16 9 C 0.14 4.56 6.28 86.38 0.54 5.10 16 10 C -0.15 -4.61 10.24 71.98 0.74 -3.88 16 11 S 0.07 3.49 19.04 -56.49 -1.08 2.41 16 12 C -0.04 -2.44 6.23 22.73 0.14 -2.30 16 13 C -0.41 -21.75 8.89 23.08 0.21 -21.55 16 14 H 0.10 4.85 6.81 -2.91 -0.02 4.83 16 15 C 0.01 0.56 5.49 85.22 0.47 1.03 16 16 N -0.82 -41.28 10.77 21.83 0.24 -41.05 16 17 Si 1.00 36.94 29.57 68.60 2.03 38.97 16 18 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 19 H -0.27 -9.27 7.11 99.48 0.71 -8.57 16 20 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 21 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 22 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.06 2.44 7.00 -2.38 -0.02 2.42 16 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.05 1.79 7.06 -2.39 -0.02 1.77 16 27 H 0.10 2.42 7.89 -2.39 -0.02 2.40 16 28 H 0.06 1.69 6.26 -2.39 -0.01 1.67 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.05 1.81 7.61 -2.39 -0.02 1.79 16 32 H 0.09 2.29 7.89 -2.39 -0.02 2.27 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.66 6.26 -2.39 -0.01 1.64 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.30 13.56 8.30 -92.71 -0.77 12.79 16 Total: -1.00 -63.08 306.68 4.60 -58.49 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 1.06 Total: 18.57 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 5.93 Total: -23.67 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -3.35 Total: -94.77 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.08 Total: 2.41 kcal Total: -63.08 4.60 -58.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082426022.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.350 kcal (2) G-P(sol) polarization free energy of solvation -63.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds