Wall clock time and date at job start Mon Mar 30 2020 07:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47110 * 2 1 4 4 C 1.50700 * 109.47117 * 179.97438 * 3 2 1 5 5 N 1.30676 * 123.22164 * 90.02057 * 4 3 2 6 6 C 1.29530 * 117.62741 * 179.97438 * 5 4 3 7 7 C 1.50697 * 124.55605 * 179.97438 * 6 5 4 8 8 N 1.46907 * 109.47502 * 90.00050 * 7 6 5 9 9 C 1.46897 * 110.99698 * 66.03839 * 8 7 6 10 10 C 1.46895 * 111.00022 * 189.99820 * 8 7 6 11 11 S 1.70880 * 110.87805 * 0.24518 * 6 5 4 12 12 C 1.38584 * 123.22284 * 269.98433 * 4 3 2 13 13 C 1.40036 * 126.26013 * 0.03300 * 12 4 3 14 14 H 1.07998 * 119.99440 * 353.67333 * 13 12 4 15 15 C 1.40071 * 120.00269 * 173.66938 * 13 12 4 16 16 N 1.30856 * 119.99988 * 6.53478 * 15 13 12 17 17 Si 1.86798 * 119.99675 * 186.53399 * 15 13 12 18 18 H 1.48503 * 109.47097 * 94.98798 * 17 15 13 19 19 H 1.48503 * 109.46907 * 214.98369 * 17 15 13 20 20 H 1.48500 * 109.47426 * 334.98247 * 17 15 13 21 21 H 1.08999 * 109.47316 * 300.00461 * 1 2 3 22 22 H 1.09000 * 109.47066 * 59.99947 * 1 2 3 23 23 H 1.09006 * 109.47353 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47316 * 239.99539 * 2 1 3 25 25 H 1.09006 * 109.46934 * 119.99668 * 2 1 3 26 26 H 1.08999 * 109.47408 * 59.99595 * 3 2 1 27 27 H 1.09006 * 109.46951 * 299.99657 * 3 2 1 28 28 H 1.09004 * 109.47574 * 329.99891 * 7 6 5 29 29 H 1.09000 * 109.47147 * 209.99485 * 7 6 5 30 30 H 1.09008 * 109.47141 * 183.95879 * 9 8 7 31 31 H 1.09000 * 109.47241 * 63.95818 * 9 8 7 32 32 H 1.08998 * 109.48025 * 303.95766 * 9 8 7 33 33 H 1.09001 * 109.47091 * 299.99459 * 10 8 7 34 34 H 1.08994 * 109.47438 * 59.99689 * 10 8 7 35 35 H 1.09006 * 109.47033 * 180.02562 * 10 8 7 36 36 H 0.97001 * 120.00150 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2634 1.4427 -1.0922 6 6 5.5525 1.4432 -0.9654 7 6 6.5247 1.4430 -2.1169 8 7 6.8402 2.8279 -2.4918 9 6 7.5720 3.5106 -1.4165 10 6 7.5929 2.8736 -3.7524 11 16 6.0022 1.4366 0.6831 12 6 4.3058 1.4430 1.1603 13 6 3.8145 1.4429 2.4716 14 1 2.7544 1.5455 2.6510 15 6 4.6977 1.3097 3.5505 16 7 5.9897 1.3139 3.3428 17 14 4.0313 1.1260 5.2859 18 1 3.9481 -0.3152 5.6342 19 1 4.9379 1.8142 6.2397 20 1 2.6782 1.7330 5.3634 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 6.0793 0.9286 -2.9685 29 1 7.4393 0.9297 -1.8201 30 1 7.7314 4.5535 -1.6907 31 1 8.5353 3.0231 -1.2662 32 1 6.9925 3.4619 -0.4946 33 1 8.5257 2.3212 -3.6388 34 1 6.9983 2.4232 -4.5471 35 1 7.8137 3.9104 -4.0063 36 1 6.6014 1.2213 4.0899 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082428604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:01 Heat of formation + Delta-G solvation = 5.469409 kcal Electronic energy + Delta-G solvation = -16782.611693 eV Core-core repulsion = 14199.009763 eV Total energy + Delta-G solvation = -2583.601929 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -37.92087 -36.58528 -34.20702 -33.68405 -30.06754 -27.98717 -27.08863 -26.73248 -23.80286 -22.51495 -21.12657 -19.92400 -18.64689 -16.95191 -15.81495 -15.27928 -14.91754 -14.53187 -14.35048 -13.86631 -13.43785 -12.97742 -12.84779 -12.18895 -12.02296 -11.91066 -11.75922 -11.55246 -11.43249 -11.31064 -11.14597 -11.09468 -10.78964 -10.62086 -10.35546 -10.32112 -9.81843 -9.77191 -9.14446 -7.86548 -7.72565 -7.70004 -7.04074 -6.98798 -4.55901 2.47168 2.88439 2.94134 3.02401 3.45562 3.63221 4.01201 4.15437 4.72255 5.03826 5.51918 5.62688 5.71736 5.74854 5.80753 5.89209 5.93700 6.01063 6.10774 6.23713 6.31407 6.44076 6.49400 6.60158 6.64134 6.68033 6.73624 6.93306 6.96713 7.18877 7.40695 7.58255 7.62293 7.74629 7.97264 8.36233 8.38590 9.74409 9.87696 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.008313 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.479996 B = 3367.300731 C = 4791.020749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.000 4.000 4 C -0.142 4.142 5 N -0.411 5.411 6 C -0.176 4.176 7 C 0.169 3.831 8 N -0.540 5.540 9 C 0.022 3.978 10 C 0.027 3.973 11 S 0.114 5.886 12 C 0.006 3.994 13 C -0.367 4.367 14 H 0.099 0.901 15 C 0.050 3.950 16 N -0.773 5.773 17 Si 0.933 3.067 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.257 1.257 21 H 0.049 0.951 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.028 0.972 30 H 0.057 0.943 31 H 0.017 0.983 32 H 0.083 0.917 33 H 0.017 0.983 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.539 -0.018 -1.477 1.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.040 4.040 4 C -0.278 4.278 5 N -0.123 5.123 6 C -0.445 4.445 7 C 0.039 3.961 8 N -0.264 5.264 9 C -0.127 4.127 10 C -0.121 4.121 11 S 0.366 5.634 12 C -0.117 4.117 13 C -0.404 4.404 14 H 0.117 0.883 15 C -0.172 4.172 16 N -0.400 5.400 17 Si 0.757 3.243 18 H -0.190 1.190 19 H -0.197 1.197 20 H -0.180 1.180 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.102 0.898 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.162 0.207 -1.622 2.006 hybrid contribution -0.258 -0.496 0.893 1.053 sum 0.903 -0.289 -0.729 1.196 Atomic orbital electron populations 1.21795 0.97307 1.00412 1.01082 1.21499 0.93654 0.98594 1.01624 1.19430 0.89812 0.94862 0.99868 1.19824 0.95119 1.26620 0.86199 1.64948 1.05090 1.08938 1.33322 1.25421 0.93508 1.26672 0.98938 1.19961 0.94147 0.87333 0.94676 1.62003 1.44247 1.17205 1.02990 1.22472 0.96076 0.97707 0.96398 1.22333 0.95843 1.01077 0.92878 1.83936 1.08553 1.73810 0.97084 1.23089 0.93760 0.97731 0.97144 1.19189 0.95903 1.36810 0.88543 0.88321 1.26222 0.94523 0.93281 1.03194 1.69047 1.03165 1.32558 1.35207 0.85828 0.80078 0.79597 0.78847 1.19010 1.19736 1.18016 0.93173 0.93372 0.93747 0.92852 0.92248 0.92651 0.93364 0.90998 0.95351 0.92467 0.96442 0.89845 0.96440 0.91806 0.92044 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.12 -2.23 5.92 -26.73 -0.16 -2.39 16 3 C 0.00 0.01 5.41 -27.88 -0.15 -0.14 16 4 C -0.14 -3.62 6.15 -82.96 -0.51 -4.13 16 5 N -0.41 -10.73 10.48 -7.08 -0.07 -10.81 16 6 C -0.18 -4.31 6.15 -13.25 -0.08 -4.39 16 7 C 0.17 3.50 5.53 -4.97 -0.03 3.47 16 8 N -0.54 -10.35 5.01 -252.72 -1.27 -11.62 16 9 C 0.02 0.40 9.36 60.06 0.56 0.96 16 10 C 0.03 0.41 9.57 60.06 0.57 0.98 16 11 S 0.11 2.82 18.64 -107.50 -2.00 0.82 16 12 C 0.01 0.16 6.24 -38.78 -0.24 -0.08 16 13 C -0.37 -9.05 8.94 -38.22 -0.34 -9.39 16 14 H 0.10 2.30 6.90 -52.49 -0.36 1.94 16 15 C 0.05 1.14 5.49 -17.28 -0.09 1.04 16 16 N -0.77 -18.26 10.80 55.56 0.60 -17.66 16 17 Si 0.93 17.15 29.57 -169.99 -5.03 12.13 16 18 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 19 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 20 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.05 1.16 7.09 -51.93 -0.37 0.80 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.46 8.06 -51.93 -0.42 1.04 16 29 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 30 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 31 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 1.75 5.80 -51.93 -0.30 1.44 16 33 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.30 6.28 8.30 -40.82 -0.34 5.95 16 LS Contribution 308.31 15.07 4.65 4.65 Total: -1.00 -27.63 308.31 -8.88 -36.51 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.66 Total: 1.98 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -0.10 Total: -15.99 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: -0.74 Total: -40.09 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.13 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.00 Total: 0.82 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.63 -8.88 -36.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082428604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.980 kcal (2) G-P(sol) polarization free energy of solvation -27.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds