Wall clock time and date at job start Mon Mar 30 2020 07:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 N 1.30675 * 123.22061 * 60.02345 * 4 2 1 6 6 C 1.29524 * 117.62640 * 180.02562 * 5 4 2 7 7 C 1.50709 * 124.55983 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.47285 * 90.00013 * 7 6 5 9 9 C 1.46898 * 110.99871 * 66.04681 * 8 7 6 10 10 C 1.46891 * 110.99649 * 190.00041 * 8 7 6 11 11 S 1.70880 * 110.88153 * 0.02562 * 6 5 4 12 12 C 1.38584 * 123.22302 * 239.73284 * 4 2 1 13 13 C 1.40034 * 126.25774 * 0.02562 * 12 4 2 14 14 H 1.08004 * 119.99773 * 359.97438 * 13 12 4 15 15 C 1.40072 * 120.00257 * 179.97438 * 13 12 4 16 16 N 1.30861 * 120.00134 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00176 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46914 * 90.00110 * 17 15 13 19 19 H 1.48499 * 109.46963 * 210.00028 * 17 15 13 20 20 H 1.48497 * 109.47030 * 330.00330 * 17 15 13 21 21 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 22 22 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 24 24 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 25 25 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 26 26 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 27 27 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.46646 * 210.00258 * 7 6 5 29 29 H 1.09001 * 109.46681 * 329.99567 * 7 6 5 30 30 H 1.08996 * 109.47534 * 59.99869 * 9 8 7 31 31 H 1.08998 * 109.46966 * 180.02562 * 9 8 7 32 32 H 1.09003 * 109.47218 * 299.99927 * 9 8 7 33 33 H 1.09000 * 109.47470 * 59.99889 * 10 8 7 34 34 H 1.09007 * 109.47159 * 179.97438 * 10 8 7 35 35 H 1.08998 * 109.47371 * 299.99749 * 10 8 7 36 36 H 0.96998 * 120.00193 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7560 -0.3187 -2.4462 6 6 2.2447 -1.0109 -3.4259 7 6 2.0255 -0.7011 -4.8844 8 7 3.0854 0.1987 -5.3586 9 6 4.3930 -0.4704 -5.3362 10 6 2.7793 0.7113 -6.7007 11 16 3.1703 -2.3233 -2.8422 12 6 2.8363 -1.8381 -1.1812 13 6 3.2955 -2.4778 -0.0233 14 1 3.0250 -2.0938 0.9492 15 6 4.1058 -3.6158 -0.1263 16 7 4.4340 -4.0808 -1.3047 17 14 4.7190 -4.4688 1.4183 18 1 3.7411 -5.5071 1.8317 19 1 6.0317 -5.1064 1.1437 20 1 4.8714 -3.4709 2.5074 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9562 0.8901 27 1 3.1301 1.4425 0.0005 28 1 2.0499 -1.6265 -5.4600 29 1 1.0560 -0.2195 -5.0117 30 1 4.3637 -1.3472 -5.9829 31 1 5.1596 0.2182 -5.6916 32 1 4.6261 -0.7784 -4.3169 33 1 1.8392 1.2623 -6.6736 34 1 3.5798 1.3751 -7.0275 35 1 2.6915 -0.1228 -7.3969 36 1 4.9948 -4.8691 -1.3760 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082431512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:04 Heat of formation + Delta-G solvation = 8.639466 kcal Electronic energy + Delta-G solvation = -17014.871939 eV Core-core repulsion = 14431.407474 eV Total energy + Delta-G solvation = -2583.464465 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.03427 -36.63113 -34.18752 -33.49391 -29.71615 -27.89181 -27.07474 -26.24373 -24.48107 -22.61063 -21.53385 -19.67561 -18.64092 -16.69521 -15.68988 -15.31079 -14.91100 -14.51797 -14.25049 -13.75669 -13.09093 -12.92396 -12.84853 -12.00936 -11.97961 -11.84429 -11.76978 -11.54782 -11.45466 -11.29858 -11.15847 -11.06779 -10.83486 -10.62755 -10.36959 -10.18856 -9.77940 -9.74047 -9.07750 -7.84214 -7.73645 -7.68403 -7.01029 -6.98609 -4.55008 2.48391 2.88937 2.93938 3.03447 3.46311 3.63722 4.02359 4.17334 4.72842 5.06594 5.52762 5.62323 5.73091 5.88515 5.94549 5.97580 6.07431 6.10881 6.21405 6.24085 6.39882 6.45487 6.58995 6.61409 6.68546 6.72523 6.79184 6.96339 7.17519 7.19846 7.40625 7.58269 7.62589 7.74846 7.99953 8.36962 8.39506 9.75680 9.89195 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.018731 B = 0.008491 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.492970 B = 3296.866273 C = 4428.719188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.015 3.985 3 C -0.131 4.131 4 C -0.134 4.134 5 N -0.406 5.406 6 C -0.177 4.177 7 C 0.169 3.831 8 N -0.540 5.540 9 C 0.024 3.976 10 C 0.027 3.973 11 S 0.116 5.884 12 C 0.005 3.995 13 C -0.369 4.369 14 H 0.098 0.902 15 C 0.049 3.951 16 N -0.775 5.775 17 Si 0.933 3.067 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.257 1.257 21 H 0.052 0.948 22 H 0.044 0.956 23 H 0.036 0.964 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.018 0.982 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.017 0.983 36 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 1.308 -1.976 2.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.006 4.006 3 C -0.189 4.189 4 C -0.270 4.270 5 N -0.118 5.118 6 C -0.447 4.447 7 C 0.039 3.961 8 N -0.264 5.264 9 C -0.125 4.125 10 C -0.121 4.121 11 S 0.369 5.631 12 C -0.119 4.119 13 C -0.406 4.406 14 H 0.116 0.884 15 C -0.172 4.172 16 N -0.402 5.402 17 Si 0.757 3.243 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.181 1.181 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.035 0.965 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.377 1.245 -2.573 2.883 hybrid contribution 0.053 -0.708 0.729 1.018 sum 0.431 0.536 -1.844 1.968 Atomic orbital electron populations 1.21737 0.96657 1.00587 0.99947 1.19042 0.93634 0.93860 0.94029 1.21733 1.00400 0.96841 0.99933 1.19698 1.13990 1.01921 0.91341 1.64869 1.19467 1.28693 0.98750 1.25442 1.16816 1.05801 0.96604 1.19965 0.93659 0.92760 0.89686 1.62016 1.02915 1.38718 1.22769 1.22449 0.90699 0.96311 1.03034 1.22333 1.01530 0.98787 0.89496 1.83956 1.51336 1.28216 0.99627 1.23109 0.96763 0.96041 0.95969 1.19187 1.21562 1.06149 0.93736 0.88376 1.26208 0.95204 0.97155 0.98652 1.69014 1.26516 1.19937 1.24691 0.85835 0.78620 0.79577 0.80283 1.18971 1.19750 1.18076 0.92918 0.93654 0.94515 0.91639 0.92836 0.94574 0.93627 0.95395 0.91011 0.96395 0.92552 0.89953 0.91830 0.92070 0.96458 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.15 37.16 0.34 -2.21 16 2 C 0.02 0.33 3.22 -91.77 -0.30 0.03 16 3 C -0.13 -2.59 9.15 37.16 0.34 -2.25 16 4 C -0.13 -3.35 5.46 -82.96 -0.45 -3.81 16 5 N -0.41 -10.35 10.40 -7.07 -0.07 -10.42 16 6 C -0.18 -4.29 6.16 -13.25 -0.08 -4.37 16 7 C 0.17 3.48 5.53 -4.97 -0.03 3.45 16 8 N -0.54 -10.27 5.01 -252.72 -1.27 -11.54 16 9 C 0.02 0.43 9.26 60.06 0.56 0.99 16 10 C 0.03 0.40 9.57 60.06 0.57 0.98 16 11 S 0.12 2.87 18.69 -107.50 -2.01 0.86 16 12 C 0.00 0.12 6.25 -38.78 -0.24 -0.12 16 13 C -0.37 -9.13 8.97 -38.22 -0.34 -9.47 16 14 H 0.10 2.29 6.49 -52.48 -0.34 1.95 16 15 C 0.05 1.13 5.50 -17.28 -0.09 1.04 16 16 N -0.77 -18.32 10.76 55.56 0.60 -17.73 16 17 Si 0.93 17.19 29.56 -169.99 -5.03 12.16 16 18 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 19 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 20 H -0.26 -4.68 7.11 56.52 0.40 -4.27 16 21 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 22 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.39 6.42 -51.93 -0.33 1.06 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.07 1.44 8.06 -51.93 -0.42 1.02 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 32 H 0.08 1.72 6.04 -51.93 -0.31 1.41 16 33 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 34 H 0.06 0.81 8.12 -51.92 -0.42 0.39 16 35 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.30 6.31 8.30 -40.82 -0.34 5.97 16 LS Contribution 306.87 15.07 4.62 4.62 Total: -1.00 -27.31 306.87 -8.49 -35.80 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.61 Total: 1.98 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 0.27 Total: -15.74 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: -0.74 Total: -39.69 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -2.01 Total: 0.86 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.31 -8.49 -35.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082431512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.439 kcal (2) G-P(sol) polarization free energy of solvation -27.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds