Wall clock time and date at job start Mon Mar 30 2020 07:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99777 * 2 1 4 4 C 1.37609 * 119.99784 * 179.97438 * 2 1 3 5 5 N 1.30642 * 125.12918 * 0.02562 * 4 2 1 6 6 C 1.30465 * 117.51092 * 180.02562 * 5 4 2 7 7 C 1.50699 * 122.56932 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47078 * 0.02562 * 7 6 5 9 9 C 1.52992 * 109.46956 * 240.02179 * 7 6 5 10 10 C 1.53006 * 109.46866 * 120.02314 * 7 6 5 11 11 C 1.38464 * 114.86177 * 0.24086 * 6 5 4 12 12 C 1.39916 * 126.07632 * 179.75402 * 11 6 5 13 13 H 1.08004 * 119.99814 * 0.02562 * 12 11 6 14 14 C 1.39899 * 119.99786 * 180.02562 * 12 11 6 15 15 N 1.30999 * 120.00308 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99709 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47273 * 359.97438 * 16 14 12 18 18 H 1.48509 * 109.47321 * 119.99697 * 16 14 12 19 19 H 1.48505 * 109.47141 * 239.99698 * 16 14 12 20 20 S 1.76078 * 125.12692 * 180.02562 * 4 2 1 21 21 H 1.09004 * 109.47172 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47685 * 300.00273 * 1 2 3 23 23 H 1.09001 * 109.46806 * 60.00575 * 1 2 3 24 24 H 1.09000 * 109.47068 * 269.99589 * 3 2 1 25 25 H 1.08998 * 109.47160 * 29.99551 * 3 2 1 26 26 H 1.09004 * 109.46768 * 149.99723 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99793 * 8 7 6 28 28 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 29 29 H 1.09004 * 109.47261 * 59.99965 * 8 7 6 30 30 H 1.09001 * 109.47066 * 180.02562 * 9 7 6 31 31 H 1.08996 * 109.47747 * 299.99900 * 9 7 6 32 32 H 1.09002 * 109.47103 * 60.00312 * 9 7 6 33 33 H 1.08993 * 109.46955 * 300.00219 * 10 7 6 34 34 H 1.09000 * 109.47050 * 60.00048 * 10 7 6 35 35 H 1.09001 * 109.47002 * 179.97438 * 10 7 6 36 36 H 0.97000 * 120.00531 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1530 -1.1918 0.0005 5 7 1.6035 -2.3770 0.0006 6 6 2.3999 -3.4104 0.0016 7 6 1.8890 -4.8282 0.0024 8 6 0.3591 -4.8190 0.0011 9 6 2.3937 -5.5514 1.2526 10 6 2.3958 -5.5535 -1.2459 11 6 3.7503 -3.1048 0.0079 12 6 4.8035 -4.0258 0.0151 13 1 4.5943 -5.0854 0.0158 14 6 6.1276 -3.5742 0.0214 15 7 6.3814 -2.2890 0.0201 16 14 7.5337 -4.8039 0.0303 17 1 6.9847 -6.1837 0.0298 18 1 8.3735 -4.6044 -1.1782 19 1 8.3609 -4.6012 1.2469 20 16 3.9068 -1.3492 0.0012 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 2.3792 1.5834 -1.0277 25 1 1.6083 2.0284 0.5138 26 1 3.1499 1.1384 0.5139 27 1 -0.0019 -4.3023 0.8903 28 1 -0.0104 -5.8445 0.0011 29 1 -0.0004 -4.3037 -0.8897 30 1 2.0246 -6.5770 1.2529 31 1 3.4836 -5.5580 1.2535 32 1 2.0327 -5.0347 2.1418 33 1 2.0363 -5.0382 -2.1365 34 1 3.4857 -5.5600 -1.2450 35 1 2.0267 -6.5791 -1.2452 36 1 7.2995 -1.9759 0.0241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082440969.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:21 Heat of formation + Delta-G solvation = 22.582361 kcal Electronic energy + Delta-G solvation = -17405.657428 eV Core-core repulsion = 14822.797572 eV Total energy + Delta-G solvation = -2582.859856 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.22537 -36.17757 -33.97804 -33.78704 -29.24682 -27.51862 -26.34648 -26.26425 -25.63649 -23.56748 -21.60566 -19.09123 -18.25043 -16.97188 -15.66403 -15.55439 -14.40696 -14.28481 -13.83195 -13.59265 -13.27851 -12.87527 -12.37986 -12.15882 -11.97357 -11.74863 -11.72250 -11.40298 -11.30971 -11.24698 -11.23646 -10.83409 -10.72542 -10.59695 -10.30198 -9.94553 -9.75630 -9.70558 -8.80844 -8.40063 -7.74601 -7.36916 -6.88384 -6.44036 -4.15717 2.63588 2.96684 3.02775 3.14975 3.17729 3.72811 3.94625 4.27204 4.39927 5.14008 5.61892 5.85784 5.89504 5.94430 5.96991 6.08241 6.19652 6.22428 6.38790 6.44287 6.47933 6.52197 6.71236 6.73567 6.84304 6.86121 6.88354 7.06492 7.27339 7.37698 7.54436 7.73334 7.93569 8.09957 8.35082 8.58669 8.76229 9.94814 9.97449 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.018869 B = 0.010067 C = 0.006891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.565364 B = 2780.661382 C = 4062.553473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.607 5.607 3 C 0.117 3.883 4 C 0.135 3.865 5 N -0.487 5.487 6 C -0.112 4.112 7 C 0.045 3.955 8 C -0.114 4.114 9 C -0.140 4.140 10 C -0.140 4.140 11 C -0.003 4.003 12 C -0.385 4.385 13 H 0.105 0.895 14 C 0.049 3.951 15 N -0.795 5.795 16 Si 0.927 3.073 17 H -0.257 1.257 18 H -0.272 1.272 19 H -0.272 1.272 20 S 0.088 5.912 21 H 0.079 0.921 22 H 0.031 0.969 23 H 0.030 0.970 24 H 0.034 0.966 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.031 0.969 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.035 0.965 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 0.509 0.106 2.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.333 5.333 3 C -0.028 4.028 4 C -0.228 4.228 5 N -0.207 5.207 6 C -0.243 4.243 7 C 0.042 3.958 8 C -0.172 4.172 9 C -0.198 4.198 10 C -0.197 4.197 11 C -0.126 4.126 12 C -0.421 4.421 13 H 0.123 0.877 14 C -0.169 4.169 15 N -0.423 5.423 16 Si 0.751 3.249 17 H -0.181 1.181 18 H -0.197 1.197 19 H -0.197 1.197 20 S 0.337 5.663 21 H 0.098 0.902 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.222 1.481 0.103 2.672 hybrid contribution 0.392 -1.084 -0.003 1.153 sum -1.830 0.396 0.100 1.875 Atomic orbital electron populations 1.21253 0.80888 1.02718 0.98042 1.44441 1.03322 1.01070 1.84442 1.21294 0.96493 0.85009 1.00013 1.24046 0.94888 0.87997 1.15862 1.65060 1.39540 0.96726 1.19327 1.19077 0.87193 0.92174 1.25831 1.18360 0.93465 0.90169 0.93824 1.21555 0.95727 0.98318 1.01577 1.21952 1.02608 0.97583 0.97615 1.21946 1.02558 0.97582 0.97632 1.22525 0.95689 0.93327 1.01058 1.19174 0.88675 0.94927 1.39291 0.87716 1.26094 1.01176 0.96184 0.93456 1.68883 1.22874 1.14353 1.36236 0.85897 0.79558 0.80754 0.78704 1.18092 1.19688 1.19696 1.85130 0.98349 1.05567 1.77291 0.90225 0.95051 0.95104 0.94744 0.92645 0.92090 0.93352 0.95032 0.93358 0.94581 0.91197 0.93834 0.93829 0.91247 0.94575 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.07 10.75 59.85 0.64 2.71 16 2 N -0.61 -12.50 3.35 -190.30 -0.64 -13.14 16 3 C 0.12 1.97 10.46 59.85 0.63 2.59 16 4 C 0.13 3.28 7.91 -87.86 -0.69 2.59 16 5 N -0.49 -12.28 8.44 -9.32 -0.08 -12.36 16 6 C -0.11 -2.79 5.51 -83.09 -0.46 -3.25 16 7 C 0.04 0.95 0.75 -155.66 -0.12 0.84 16 8 C -0.11 -2.24 7.79 37.16 0.29 -1.95 16 9 C -0.14 -2.80 8.24 37.15 0.31 -2.49 16 10 C -0.14 -2.79 8.24 37.16 0.31 -2.48 16 11 C 0.00 -0.07 6.01 -38.87 -0.23 -0.30 16 12 C -0.38 -9.50 7.15 -38.33 -0.27 -9.77 16 13 H 0.11 2.45 4.11 -52.48 -0.22 2.24 16 14 C 0.05 1.15 5.50 -17.29 -0.09 1.06 16 15 N -0.79 -19.38 10.74 55.55 0.60 -18.78 16 16 Si 0.93 17.82 29.56 -169.99 -5.03 12.79 16 17 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 18 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 20 S 0.09 2.21 19.00 -107.50 -2.04 0.17 16 21 H 0.08 1.54 7.10 -51.93 -0.37 1.17 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 26 H 0.06 1.08 7.06 -51.93 -0.37 0.71 16 27 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.46 5.23 -51.93 -0.27 1.18 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.45 5.29 -51.93 -0.27 1.17 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.29 6.47 8.30 -40.82 -0.34 6.13 16 LS Contribution 297.24 15.07 4.48 4.48 Total: -1.00 -27.88 297.24 -7.68 -35.57 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.28 Total: 1.74 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 0.30 Total: -10.46 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.12 Total: -44.29 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.04 Total: 0.17 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.88 -7.68 -35.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082440969.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.151 kcal (2) G-P(sol) polarization free energy of solvation -27.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds