Wall clock time and date at job start Mon Mar 30 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46891 * 2 1 4 4 N 1.46496 * 109.47308 * 240.00240 * 2 1 3 5 5 C 1.46501 * 120.00292 * 54.42763 * 4 2 1 6 6 C 1.50701 * 109.46842 * 90.00127 * 5 4 2 7 7 H 1.07999 * 120.00272 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99643 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99778 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99809 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47348 * 59.99507 * 10 8 6 12 12 H 1.48498 * 109.47030 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46951 * 299.99568 * 10 8 6 14 14 C 1.38997 * 119.99992 * 234.43026 * 4 2 1 15 15 C 1.39110 * 119.69851 * 350.14351 * 14 4 2 16 16 C 1.38338 * 119.12893 * 179.75133 * 15 14 4 17 17 C 1.38818 * 118.51853 * 0.51005 * 16 15 14 18 18 C 1.38196 * 119.32050 * 359.73155 * 17 16 15 19 19 Cl 1.73600 * 119.58994 * 180.02562 * 18 17 16 20 20 N 1.32067 * 120.82210 * 0.02562 * 18 17 16 21 21 H 1.09000 * 109.47236 * 56.46837 * 1 2 3 22 22 H 1.08994 * 109.47161 * 176.46854 * 1 2 3 23 23 H 1.09005 * 109.47361 * 296.46880 * 1 2 3 24 24 H 1.08999 * 109.47332 * 119.99876 * 2 1 3 25 25 H 1.09002 * 109.46884 * 63.53823 * 3 2 1 26 26 H 1.09006 * 109.46933 * 183.53363 * 3 2 1 27 27 H 1.08992 * 109.47197 * 303.53648 * 3 2 1 28 28 H 1.08990 * 109.47346 * 210.00425 * 5 4 2 29 29 H 1.09003 * 109.47090 * 330.00710 * 5 4 2 30 30 H 0.97007 * 119.99493 * 179.97438 * 9 8 6 31 31 H 1.08006 * 120.43479 * 359.97313 * 15 14 4 32 32 H 1.08003 * 120.74097 * 180.23669 * 16 15 14 33 33 H 1.08000 * 120.34198 * 179.74503 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 -1.1961 5 6 1.5667 -0.2651 -2.5233 6 6 2.5015 0.7891 -3.0579 7 1 3.3471 1.1105 -2.4680 8 6 2.2765 1.3442 -4.2999 9 7 1.2465 0.9532 -5.0180 10 14 3.4355 2.6505 -4.9629 11 1 4.8072 2.0904 -5.0633 12 1 2.9777 3.0818 -6.3081 13 1 3.4434 3.8174 -4.0445 14 6 2.9102 -1.7494 -1.0719 15 6 3.4938 -2.0178 0.1620 16 6 4.3757 -3.0777 0.2735 17 6 4.6541 -3.8303 -0.8593 18 6 4.0425 -3.5048 -2.0551 19 17 4.3851 -4.4417 -3.4759 20 7 3.2007 -2.4900 -2.1304 21 1 -0.3634 0.5677 -0.8566 22 1 -0.3633 -1.0257 -0.0633 23 1 -0.3634 0.4581 0.9200 24 1 1.8933 -0.5138 0.8900 25 1 1.7292 1.9377 0.9200 26 1 3.1281 1.4432 -0.0633 27 1 1.6258 1.9743 -0.8565 28 1 1.5616 -1.1217 -3.1972 29 1 0.5597 0.1456 -2.4501 30 1 1.0880 1.3440 -5.8916 31 1 3.2586 -1.4089 1.0225 32 1 4.8408 -3.3117 1.2197 33 1 5.3414 -4.6617 -0.8067 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082461353.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:29 Heat of formation + Delta-G solvation = 34.717657 kcal Electronic energy + Delta-G solvation = -16843.757294 eV Core-core repulsion = 14123.546863 eV Total energy + Delta-G solvation = -2720.210431 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.81263 -37.10509 -36.00405 -32.92357 -32.28541 -31.31122 -29.30120 -26.79946 -26.61634 -23.58413 -22.80081 -21.73925 -19.41268 -17.36259 -16.48040 -15.99694 -15.37916 -15.00014 -14.49881 -14.26342 -13.72135 -13.24482 -13.05794 -12.71450 -12.31022 -11.92840 -11.65376 -11.60826 -11.37620 -11.11764 -10.98068 -10.83139 -10.81986 -10.52773 -10.30985 -10.01812 -9.79907 -9.36743 -8.91043 -8.78137 -8.38315 -6.84483 -5.98548 -4.04224 1.57720 1.88619 2.27696 3.31970 3.36951 3.39635 3.74875 4.30058 4.46478 5.01449 5.21537 5.32894 5.46125 5.48001 5.55197 5.58035 5.69565 5.82349 5.99187 6.11795 6.24151 6.28803 6.37058 6.56958 6.60940 6.77670 6.94805 7.14031 7.52328 7.82725 7.94720 8.25529 8.29121 8.70014 9.00217 9.59120 11.06779 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.015758 B = 0.008818 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.448284 B = 3174.609767 C = 4311.983529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 C -0.158 4.158 4 N -0.579 5.579 5 C 0.250 3.750 6 C -0.519 4.519 7 H 0.056 0.944 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.892 3.108 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.441 3.559 15 C -0.260 4.260 16 C -0.025 4.025 17 C -0.247 4.247 18 C 0.235 3.765 19 Cl -0.052 7.052 20 N -0.523 5.523 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 -5.992 11.337 13.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 C -0.216 4.216 4 N -0.286 5.286 5 C 0.131 3.869 6 C -0.559 4.559 7 H 0.074 0.926 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.204 1.204 14 C 0.204 3.796 15 C -0.286 4.286 16 C -0.051 4.051 17 C -0.272 4.272 18 C 0.067 3.933 19 Cl -0.024 7.024 20 N -0.242 5.242 21 H 0.088 0.912 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.268 -5.617 10.204 11.866 hybrid contribution 1.093 0.530 0.014 1.215 sum 3.361 -5.086 10.218 11.899 Atomic orbital electron populations 1.22160 0.95322 1.02099 1.02307 1.20974 0.93962 0.93469 0.87384 1.22181 1.01606 0.95890 1.01925 1.47332 1.43620 1.28978 1.08707 1.19327 0.94742 0.96037 0.76836 1.21419 1.11394 1.21109 1.01931 0.92616 1.24898 0.95440 0.97066 0.96575 1.69922 1.28227 1.42999 1.12146 0.86653 0.81419 0.81845 0.78061 1.20315 1.21259 1.20362 1.18129 0.87590 0.86500 0.87420 1.21479 1.05130 1.03662 0.98357 1.21082 0.94005 0.92400 0.97566 1.21229 1.08016 1.05858 0.92092 1.21172 0.93617 0.91386 0.87099 1.98369 1.93106 1.69665 1.41241 1.66440 1.18783 1.07012 1.31947 0.91160 0.92786 0.92196 0.90581 0.93194 0.92708 0.90263 0.93238 0.95006 0.92787 0.85019 0.85003 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 8.96 37.16 0.33 -2.11 16 2 C 0.15 2.43 3.11 -67.93 -0.21 2.22 16 3 C -0.16 -2.61 8.51 37.16 0.32 -2.29 16 4 N -0.58 -12.10 2.50 -167.63 -0.42 -12.52 16 5 C 0.25 6.33 4.86 -5.19 -0.03 6.31 16 6 C -0.52 -14.25 7.97 -34.44 -0.27 -14.52 16 7 H 0.06 1.54 7.59 -52.49 -0.40 1.15 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 10 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.44 9.02 7.34 -155.02 -1.14 7.88 16 15 C -0.26 -4.23 9.25 -39.22 -0.36 -4.59 16 16 C -0.02 -0.35 10.16 -39.33 -0.40 -0.75 16 17 C -0.25 -3.78 9.87 -39.38 -0.39 -4.17 16 18 C 0.24 4.43 7.27 -17.47 -0.13 4.30 16 19 Cl -0.05 -0.90 29.10 -51.86 -1.51 -2.41 16 20 N -0.52 -11.56 9.05 -9.55 -0.09 -11.65 16 21 H 0.07 1.21 6.68 -51.93 -0.35 0.86 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.08 1.08 5.47 -51.93 -0.28 0.79 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.08 1.53 7.18 -51.93 -0.37 1.16 16 28 H 0.05 1.42 7.25 -51.93 -0.38 1.05 16 29 H 0.03 0.83 6.23 -51.93 -0.32 0.51 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.13 1.81 5.94 -52.48 -0.31 1.50 16 32 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 33 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 290.89 15.07 4.38 4.38 Total: -1.00 -30.23 290.89 -8.38 -38.61 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.09 Total: -1.60 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.38 Total: -6.08 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.23 Total: -49.71 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.51 Total: -2.41 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.23 -8.38 -38.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082461353.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.326 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds