Wall clock time and date at job start Mon Mar 30 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46891 * 2 1 4 4 N 1.46496 * 109.47308 * 240.00240 * 2 1 3 5 5 C 1.46501 * 120.00292 * 54.42763 * 4 2 1 6 6 C 1.50701 * 109.46842 * 90.00127 * 5 4 2 7 7 H 1.07999 * 120.00272 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99643 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99778 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99809 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47348 * 59.99507 * 10 8 6 12 12 H 1.48498 * 109.47030 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46951 * 299.99568 * 10 8 6 14 14 C 1.38997 * 119.99992 * 234.43026 * 4 2 1 15 15 C 1.39110 * 119.69851 * 350.14351 * 14 4 2 16 16 C 1.38338 * 119.12893 * 179.75133 * 15 14 4 17 17 C 1.38818 * 118.51853 * 0.51005 * 16 15 14 18 18 C 1.38196 * 119.32050 * 359.73155 * 17 16 15 19 19 Cl 1.73600 * 119.58994 * 180.02562 * 18 17 16 20 20 N 1.32067 * 120.82210 * 0.02562 * 18 17 16 21 21 H 1.09000 * 109.47236 * 56.46837 * 1 2 3 22 22 H 1.08994 * 109.47161 * 176.46854 * 1 2 3 23 23 H 1.09005 * 109.47361 * 296.46880 * 1 2 3 24 24 H 1.08999 * 109.47332 * 119.99876 * 2 1 3 25 25 H 1.09002 * 109.46884 * 63.53823 * 3 2 1 26 26 H 1.09006 * 109.46933 * 183.53363 * 3 2 1 27 27 H 1.08992 * 109.47197 * 303.53648 * 3 2 1 28 28 H 1.08990 * 109.47346 * 210.00425 * 5 4 2 29 29 H 1.09003 * 109.47090 * 330.00710 * 5 4 2 30 30 H 0.97007 * 119.99493 * 179.97438 * 9 8 6 31 31 H 1.08006 * 120.43479 * 359.97313 * 15 14 4 32 32 H 1.08003 * 120.74097 * 180.23669 * 16 15 14 33 33 H 1.08000 * 120.34198 * 179.74503 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 -1.1961 5 6 1.5667 -0.2651 -2.5233 6 6 2.5015 0.7891 -3.0579 7 1 3.3471 1.1105 -2.4680 8 6 2.2765 1.3442 -4.2999 9 7 1.2465 0.9532 -5.0180 10 14 3.4355 2.6505 -4.9629 11 1 4.8072 2.0904 -5.0633 12 1 2.9777 3.0818 -6.3081 13 1 3.4434 3.8174 -4.0445 14 6 2.9102 -1.7494 -1.0719 15 6 3.4938 -2.0178 0.1620 16 6 4.3757 -3.0777 0.2735 17 6 4.6541 -3.8303 -0.8593 18 6 4.0425 -3.5048 -2.0551 19 17 4.3851 -4.4417 -3.4759 20 7 3.2007 -2.4900 -2.1304 21 1 -0.3634 0.5677 -0.8566 22 1 -0.3633 -1.0257 -0.0633 23 1 -0.3634 0.4581 0.9200 24 1 1.8933 -0.5138 0.8900 25 1 1.7292 1.9377 0.9200 26 1 3.1281 1.4432 -0.0633 27 1 1.6258 1.9743 -0.8565 28 1 1.5616 -1.1217 -3.1972 29 1 0.5597 0.1456 -2.4501 30 1 1.0880 1.3440 -5.8916 31 1 3.2586 -1.4089 1.0225 32 1 4.8408 -3.3117 1.2197 33 1 5.3414 -4.6617 -0.8067 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082461353.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:29 Heat of formation + Delta-G solvation = 17.449749 kcal Electronic energy + Delta-G solvation = -16844.506086 eV Core-core repulsion = 14123.546863 eV Total energy + Delta-G solvation = -2720.959224 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.19027 -38.53276 -37.35165 -34.90948 -33.72364 -32.66381 -30.95601 -28.45974 -27.99520 -25.28882 -24.23604 -23.22423 -20.82199 -18.75035 -18.54145 -17.54099 -16.65056 -16.54361 -16.20783 -15.75938 -15.16032 -14.64407 -14.55713 -14.10081 -13.98596 -13.30735 -13.25545 -12.99280 -12.83091 -12.74514 -12.72393 -12.38660 -12.23112 -12.20230 -12.05904 -11.61472 -11.45274 -10.88605 -10.57511 -10.35021 -10.20657 -8.46367 -8.02195 -6.26385 0.26192 0.61856 0.95011 1.34628 1.37810 1.44697 2.26629 2.44102 2.95766 3.14069 3.77297 4.00792 4.17946 4.22386 4.30615 4.35768 4.45256 4.63895 4.83356 4.84806 4.98106 5.03802 5.09046 5.20948 5.27224 5.34826 5.45935 5.56653 5.68068 5.78066 6.14221 6.29496 6.62238 6.86856 7.30700 7.43090 8.90931 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.015758 B = 0.008818 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.448284 B = 3174.609767 C = 4311.983529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 C -0.150 4.150 4 N -0.595 5.595 5 C 0.275 3.725 6 C -0.519 4.519 7 H 0.049 0.951 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.954 3.046 11 H -0.280 1.280 12 H -0.282 1.282 13 H -0.264 1.264 14 C 0.408 3.592 15 C -0.250 4.250 16 C -0.011 4.011 17 C -0.229 4.229 18 C 0.203 3.797 19 Cl -0.056 7.056 20 N -0.579 5.579 21 H 0.038 0.962 22 H 0.049 0.951 23 H 0.098 0.902 24 H 0.112 0.888 25 H 0.089 0.911 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.004 0.996 29 H 0.014 0.986 30 H 0.263 0.737 31 H 0.162 0.838 32 H 0.187 0.813 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.567 -6.133 14.436 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.039 3.961 3 C -0.208 4.208 4 N -0.305 5.305 5 C 0.153 3.847 6 C -0.558 4.558 7 H 0.067 0.933 8 C -0.190 4.190 9 N -0.570 5.570 10 Si 0.780 3.220 11 H -0.206 1.206 12 H -0.207 1.207 13 H -0.188 1.188 14 C 0.172 3.828 15 C -0.276 4.276 16 C -0.036 4.036 17 C -0.253 4.253 18 C 0.037 3.963 19 Cl -0.028 7.028 20 N -0.300 5.300 21 H 0.057 0.943 22 H 0.068 0.932 23 H 0.116 0.884 24 H 0.129 0.871 25 H 0.108 0.892 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.022 0.978 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.179 0.821 32 H 0.204 0.796 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.938 -5.788 13.334 15.060 hybrid contribution 0.633 0.451 -0.866 1.163 sum 4.570 -5.337 12.468 14.312 Atomic orbital electron populations 1.22112 0.94664 1.01658 1.02803 1.21292 0.94576 0.93349 0.86903 1.22101 1.00543 0.95974 1.02221 1.47194 1.44989 1.30399 1.07891 1.18603 0.93615 0.93444 0.79040 1.21646 1.11126 1.21119 1.01892 0.93262 1.25727 0.96973 0.99293 0.97048 1.70051 1.29986 1.44459 1.12497 0.85669 0.78954 0.79649 0.77747 1.20571 1.20741 1.18838 1.18607 0.88631 0.86691 0.88877 1.21818 1.04241 1.04256 0.97242 1.21711 0.92407 0.90449 0.99080 1.21708 1.06631 1.06046 0.90928 1.21594 0.94605 0.91636 0.88460 1.98355 1.93065 1.69497 1.41861 1.66270 1.20723 1.08857 1.34115 0.94326 0.93207 0.88379 0.87055 0.89214 0.93867 0.94071 0.97755 0.96773 0.92831 0.82059 0.79589 0.81896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.56 8.96 71.98 0.65 -3.92 16 2 C 0.14 4.50 3.11 44.99 0.14 4.64 16 3 C -0.15 -4.78 8.51 71.98 0.61 -4.17 16 4 N -0.60 -25.25 2.50 -684.25 -1.71 -26.96 16 5 C 0.27 14.72 4.86 85.63 0.42 15.14 16 6 C -0.52 -29.56 7.97 25.60 0.20 -29.35 16 7 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 8 C 0.01 0.45 5.46 84.66 0.46 0.92 16 9 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 10 Si 0.95 45.73 29.54 68.60 2.03 47.75 16 11 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 13 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 14 C 0.41 16.51 7.34 133.05 0.98 17.49 16 15 C -0.25 -7.27 9.25 22.50 0.21 -7.07 16 16 C -0.01 -0.26 10.16 22.43 0.23 -0.03 16 17 C -0.23 -6.26 9.87 22.40 0.22 -6.03 16 18 C 0.20 7.53 7.27 84.65 0.62 8.14 16 19 Cl -0.06 -1.94 29.10 -2.72 -0.08 -2.02 16 20 N -0.58 -26.18 9.05 -184.13 -1.67 -27.85 16 21 H 0.04 1.37 6.68 -2.39 -0.02 1.35 16 22 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 24 H 0.11 2.73 5.47 -2.39 -0.01 2.71 16 25 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.04 1.61 7.18 -2.39 -0.02 1.59 16 28 H 0.00 0.27 7.25 -2.39 -0.02 0.25 16 29 H 0.01 0.80 6.23 -2.39 -0.01 0.79 16 30 H 0.26 15.29 8.31 -92.70 -0.77 14.51 16 31 H 0.16 3.62 5.94 -2.91 -0.02 3.60 16 32 H 0.19 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -70.81 290.89 4.69 -66.12 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 1.11 Total: 3.87 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 4.73 Total: -4.25 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -3.09 Total: -111.47 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.08 Total: -2.02 kcal Total: -70.81 4.69 -66.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082461353.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.566 kcal (2) G-P(sol) polarization free energy of solvation -70.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds