Wall clock time and date at job start Mon Mar 30 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99494 * 2 1 4 4 C 1.50696 * 109.47498 * 66.04192 * 3 2 1 5 5 H 1.07998 * 119.99834 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00150 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00024 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00023 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47300 * 89.99885 * 8 6 4 10 10 H 1.48503 * 109.47050 * 209.99758 * 8 6 4 11 11 H 1.48506 * 109.47062 * 329.99464 * 8 6 4 12 12 C 1.46898 * 111.00495 * 236.04633 * 2 1 3 13 13 C 1.50702 * 109.46563 * 293.94906 * 12 2 1 14 14 C 1.38905 * 120.04391 * 269.97549 * 13 12 2 15 15 N 1.39671 * 120.06896 * 0.04805 * 14 13 12 16 16 C 1.38907 * 119.86399 * 180.02562 * 14 13 12 17 17 C 1.38135 * 119.94750 * 0.02562 * 16 14 13 18 18 C 1.38240 * 120.08714 * 359.97438 * 17 16 14 19 19 C 1.38197 * 120.04161 * 90.00380 * 13 12 2 20 20 Cl 1.73601 * 119.97705 * 359.97253 * 19 13 12 21 21 H 1.09005 * 109.46857 * 183.95663 * 1 2 3 22 22 H 1.08996 * 109.47731 * 303.95154 * 1 2 3 23 23 H 1.09006 * 109.47134 * 63.96236 * 1 2 3 24 24 H 1.09000 * 109.47227 * 186.04628 * 3 2 1 25 25 H 1.09008 * 109.47020 * 306.04146 * 3 2 1 26 26 H 0.96999 * 119.99597 * 180.02562 * 7 6 4 27 27 H 1.08994 * 109.47153 * 173.94970 * 12 2 1 28 28 H 1.08996 * 109.47001 * 53.94730 * 12 2 1 29 29 H 0.97003 * 119.99638 * 179.97438 * 15 14 13 30 30 H 0.96996 * 120.00264 * 359.95476 * 15 14 13 31 31 H 1.07997 * 120.02613 * 180.30063 * 16 14 13 32 32 H 1.07999 * 119.94985 * 180.02562 * 17 16 14 33 33 H 1.08008 * 119.92798 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6367 2.0472 1.2983 5 1 1.0744 1.5114 2.0487 6 6 2.0273 3.3493 1.5287 7 7 1.7139 3.9392 2.6616 8 14 3.0005 4.2760 0.2312 9 1 2.0640 4.9805 -0.6808 10 1 3.8876 5.2670 0.8917 11 1 3.8238 3.3172 -0.5487 12 6 1.9955 -0.7659 -1.1375 13 6 1.6371 -2.2204 -0.9726 14 6 2.4978 -3.0766 -0.2976 15 7 3.6963 -2.5909 0.2302 16 6 2.1640 -4.4166 -0.1483 17 6 0.9781 -4.8943 -0.6714 18 6 0.1230 -4.0404 -1.3428 19 6 0.4519 -2.7042 -1.4933 20 17 -0.6250 -1.6356 -2.3372 21 1 -0.3633 -1.0253 0.0709 22 1 -0.3634 0.5739 0.8524 23 1 -0.3634 0.4511 -0.9234 24 1 3.0796 1.3446 -0.1082 25 1 1.5609 1.9274 -0.8310 26 1 1.9885 4.8554 2.8235 27 1 3.0797 -0.6610 -1.1755 28 1 1.5611 -0.3873 -2.0627 29 1 4.2964 -3.1897 0.7017 30 1 3.9286 -1.6551 0.1251 31 1 2.8289 -5.0836 0.3802 32 1 0.7183 -5.9361 -0.5550 33 1 -0.8033 -4.4167 -1.7512 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082582583.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:38 Heat of formation + Delta-G solvation = 28.393144 kcal Electronic energy + Delta-G solvation = -16690.986639 eV Core-core repulsion = 13970.501957 eV Total energy + Delta-G solvation = -2720.484682 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.66234 -36.54087 -36.30070 -34.24178 -32.60349 -31.08458 -28.70264 -27.70466 -26.59384 -23.73942 -22.24731 -21.13833 -19.96310 -17.21587 -17.04812 -16.80935 -15.52022 -14.92997 -14.50998 -14.36000 -14.24362 -13.88745 -13.39332 -13.10599 -12.55350 -12.25797 -12.02609 -11.94239 -11.45674 -11.25807 -11.07408 -10.90703 -10.67432 -10.45131 -10.28664 -10.06966 -9.82772 -9.27897 -8.59685 -8.52197 -7.44884 -7.27070 -6.04784 -4.01831 1.34250 1.65117 2.33086 3.27616 3.35219 3.36252 3.82207 4.06102 4.41569 4.87638 4.99837 5.07526 5.22402 5.29842 5.50707 5.69294 5.69710 5.81043 6.12398 6.23474 6.33088 6.38494 6.49846 6.52394 6.77082 6.80774 6.90048 7.01758 7.58635 7.59128 7.91686 7.92255 8.05900 8.66903 9.04875 9.56905 11.08393 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.027748 B = 0.006323 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.821970 B = 4427.411334 C = 4921.523668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.521 5.521 3 C 0.161 3.839 4 C -0.506 4.506 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.091 3.909 13 C -0.137 4.137 14 C 0.250 3.750 15 N -0.865 5.865 16 C -0.202 4.202 17 C -0.065 4.065 18 C -0.178 4.178 19 C 0.018 3.982 20 Cl -0.071 7.071 21 H 0.050 0.950 22 H 0.074 0.926 23 H 0.016 0.984 24 H 0.025 0.975 25 H -0.016 1.016 26 H 0.263 0.737 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.396 0.604 30 H 0.406 0.594 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 -16.204 -8.935 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.245 5.245 3 C 0.035 3.965 4 C -0.545 4.545 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.702 3.298 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.037 4.037 13 C -0.143 4.143 14 C 0.142 3.858 15 N -0.403 5.403 16 C -0.226 4.226 17 C -0.085 4.085 18 C -0.199 4.199 19 C -0.009 4.009 20 Cl -0.042 7.042 21 H 0.069 0.931 22 H 0.093 0.907 23 H 0.035 0.965 24 H 0.043 0.957 25 H 0.002 0.998 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.224 0.776 30 H 0.237 0.763 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.834 -16.125 -8.484 18.240 hybrid contribution 0.441 1.263 -1.205 1.800 sum 1.275 -14.862 -9.688 17.787 Atomic orbital electron populations 1.22431 0.87909 1.00223 1.00651 1.62062 1.07919 1.15822 1.38693 1.20211 0.94948 0.84242 0.97127 1.21024 1.35409 0.97169 1.00851 0.90111 1.24898 0.95828 0.97335 0.95281 1.69896 1.46936 1.13204 1.23935 0.86872 0.80633 0.80074 0.82187 1.20361 1.21196 1.19267 1.20893 0.99626 0.89079 0.94145 1.19142 0.94750 0.96278 1.04123 1.17368 0.86360 0.91552 0.90493 1.42588 1.20404 1.13987 1.63356 1.20602 0.99942 0.93862 1.08147 1.20698 0.93049 0.98998 0.95720 1.20675 1.01811 0.91599 1.05805 1.20539 0.91505 0.90962 0.97936 1.98356 1.63916 1.65559 1.76378 0.93099 0.90711 0.96534 0.95655 0.99831 0.92697 0.91170 0.94081 0.77594 0.76280 0.86018 0.85679 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 7.81 60.06 0.47 1.21 16 2 N -0.52 -11.01 4.74 -245.83 -1.17 -12.18 16 3 C 0.16 3.90 3.79 -4.98 -0.02 3.88 16 4 C -0.51 -14.40 9.01 -34.44 -0.31 -14.71 16 5 H 0.08 2.52 7.37 -52.49 -0.39 2.13 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 8 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 12 C 0.09 1.60 4.46 -4.98 -0.02 1.58 16 13 C -0.14 -2.17 4.90 -104.39 -0.51 -2.68 16 14 C 0.25 3.51 6.73 -83.79 -0.56 2.94 16 15 N -0.86 -10.68 8.99 32.41 0.29 -10.39 16 16 C -0.20 -2.42 9.90 -39.37 -0.39 -2.81 16 17 C -0.07 -0.74 10.04 -39.62 -0.40 -1.14 16 18 C -0.18 -2.26 9.83 -39.51 -0.39 -2.65 16 19 C 0.02 0.27 5.23 -39.53 -0.21 0.07 16 20 Cl -0.07 -1.06 24.01 -51.86 -1.24 -2.30 16 21 H 0.05 0.96 5.63 -51.93 -0.29 0.67 16 22 H 0.07 1.70 6.76 -51.93 -0.35 1.35 16 23 H 0.02 0.33 7.08 -51.93 -0.37 -0.04 16 24 H 0.03 0.61 6.99 -51.93 -0.36 0.24 16 25 H -0.02 -0.39 7.55 -51.92 -0.39 -0.79 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.07 1.16 6.34 -51.93 -0.33 0.83 16 28 H 0.04 0.73 6.88 -51.93 -0.36 0.37 16 29 H 0.40 3.75 8.84 -40.82 -0.36 3.39 16 30 H 0.41 5.45 6.83 -40.82 -0.28 5.17 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 279.83 15.07 4.22 4.22 Total: -1.00 -30.97 279.83 -8.15 -39.11 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -3.91 Total: 4.02 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -2.44 Total: -12.44 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.10 Total: -49.44 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.24 Total: -2.30 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.97 -8.15 -39.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082582583.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.508 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds