Wall clock time and date at job start Mon Mar 30 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99494 * 2 1 4 4 C 1.50696 * 109.47498 * 66.04192 * 3 2 1 5 5 H 1.07998 * 119.99834 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00150 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00024 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00023 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47300 * 89.99885 * 8 6 4 10 10 H 1.48503 * 109.47050 * 209.99758 * 8 6 4 11 11 H 1.48506 * 109.47062 * 329.99464 * 8 6 4 12 12 C 1.46898 * 111.00495 * 236.04633 * 2 1 3 13 13 C 1.50702 * 109.46563 * 293.94906 * 12 2 1 14 14 C 1.38905 * 120.04391 * 269.97549 * 13 12 2 15 15 N 1.39671 * 120.06896 * 0.04805 * 14 13 12 16 16 C 1.38907 * 119.86399 * 180.02562 * 14 13 12 17 17 C 1.38135 * 119.94750 * 0.02562 * 16 14 13 18 18 C 1.38240 * 120.08714 * 359.97438 * 17 16 14 19 19 C 1.38197 * 120.04161 * 90.00380 * 13 12 2 20 20 Cl 1.73601 * 119.97705 * 359.97253 * 19 13 12 21 21 H 1.09005 * 109.46857 * 183.95663 * 1 2 3 22 22 H 1.08996 * 109.47731 * 303.95154 * 1 2 3 23 23 H 1.09006 * 109.47134 * 63.96236 * 1 2 3 24 24 H 1.09000 * 109.47227 * 186.04628 * 3 2 1 25 25 H 1.09008 * 109.47020 * 306.04146 * 3 2 1 26 26 H 0.96999 * 119.99597 * 180.02562 * 7 6 4 27 27 H 1.08994 * 109.47153 * 173.94970 * 12 2 1 28 28 H 1.08996 * 109.47001 * 53.94730 * 12 2 1 29 29 H 0.97003 * 119.99638 * 179.97438 * 15 14 13 30 30 H 0.96996 * 120.00264 * 359.95476 * 15 14 13 31 31 H 1.07997 * 120.02613 * 180.30063 * 16 14 13 32 32 H 1.07999 * 119.94985 * 180.02562 * 17 16 14 33 33 H 1.08008 * 119.92798 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6367 2.0472 1.2983 5 1 1.0744 1.5114 2.0487 6 6 2.0273 3.3493 1.5287 7 7 1.7139 3.9392 2.6616 8 14 3.0005 4.2760 0.2312 9 1 2.0640 4.9805 -0.6808 10 1 3.8876 5.2670 0.8917 11 1 3.8238 3.3172 -0.5487 12 6 1.9955 -0.7659 -1.1375 13 6 1.6371 -2.2204 -0.9726 14 6 2.4978 -3.0766 -0.2976 15 7 3.6963 -2.5909 0.2302 16 6 2.1640 -4.4166 -0.1483 17 6 0.9781 -4.8943 -0.6714 18 6 0.1230 -4.0404 -1.3428 19 6 0.4519 -2.7042 -1.4933 20 17 -0.6250 -1.6356 -2.3372 21 1 -0.3633 -1.0253 0.0709 22 1 -0.3634 0.5739 0.8524 23 1 -0.3634 0.4511 -0.9234 24 1 3.0796 1.3446 -0.1082 25 1 1.5609 1.9274 -0.8310 26 1 1.9885 4.8554 2.8235 27 1 3.0797 -0.6610 -1.1755 28 1 1.5611 -0.3873 -2.0627 29 1 4.2964 -3.1897 0.7017 30 1 3.9286 -1.6551 0.1251 31 1 2.8289 -5.0836 0.3802 32 1 0.7183 -5.9361 -0.5550 33 1 -0.8033 -4.4167 -1.7512 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082582583.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:37 Heat of formation + Delta-G solvation = 6.524827 kcal Electronic energy + Delta-G solvation = -16691.934920 eV Core-core repulsion = 13970.501957 eV Total energy + Delta-G solvation = -2721.432964 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74229 -38.05418 -37.47100 -35.25943 -34.67534 -32.41419 -29.91669 -29.42548 -28.02546 -25.41724 -23.27166 -22.65007 -21.46257 -19.00804 -18.16919 -18.06775 -16.83012 -16.45011 -16.19088 -15.85862 -15.29369 -15.18361 -14.83877 -14.52017 -14.21962 -13.72667 -13.58793 -13.20458 -12.95034 -12.77665 -12.54230 -12.39003 -12.19327 -11.86723 -11.75474 -11.63082 -11.41272 -11.24294 -10.79213 -9.62720 -8.98723 -8.39231 -8.27770 -6.31083 0.31497 0.65790 1.24653 1.34719 1.35411 1.46470 2.34166 2.78669 3.05214 3.10350 3.43531 3.85333 4.02879 4.17365 4.43611 4.52980 4.57325 4.63939 4.71720 4.76629 4.90723 4.96497 5.03092 5.18343 5.35235 5.42733 5.52869 5.58103 5.88738 5.98291 6.31297 6.58693 6.64856 6.75079 7.02246 7.32253 8.88888 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.027748 B = 0.006323 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.821970 B = 4427.411334 C = 4921.523668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.531 5.531 3 C 0.170 3.830 4 C -0.513 4.513 5 H 0.036 0.964 6 C 0.008 3.992 7 N -0.948 5.948 8 Si 0.946 3.054 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.245 1.245 12 C 0.096 3.904 13 C -0.167 4.167 14 C 0.238 3.762 15 N -0.862 5.862 16 C -0.200 4.200 17 C -0.056 4.056 18 C -0.183 4.183 19 C 0.004 3.996 20 Cl -0.081 7.081 21 H 0.066 0.934 22 H 0.041 0.959 23 H 0.020 0.980 24 H 0.036 0.964 25 H -0.018 1.018 26 H 0.266 0.734 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.409 0.591 30 H 0.400 0.600 31 H 0.150 0.850 32 H 0.162 0.838 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.820 -18.053 -10.376 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.254 5.254 3 C 0.043 3.957 4 C -0.551 4.551 5 H 0.054 0.946 6 C -0.189 4.189 7 N -0.589 5.589 8 Si 0.770 3.230 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.169 1.169 12 C -0.031 4.031 13 C -0.173 4.173 14 C 0.130 3.870 15 N -0.401 5.401 16 C -0.223 4.223 17 C -0.075 4.075 18 C -0.204 4.204 19 C -0.023 4.023 20 Cl -0.052 7.052 21 H 0.084 0.916 22 H 0.059 0.941 23 H 0.039 0.961 24 H 0.054 0.946 25 H 0.000 1.000 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.240 0.760 30 H 0.230 0.770 31 H 0.167 0.833 32 H 0.179 0.821 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.907 -18.017 -9.929 20.659 hybrid contribution 0.057 1.687 -0.685 1.822 sum 1.964 -16.329 -10.614 19.574 Atomic orbital electron populations 1.22276 0.87930 1.00528 0.99237 1.61966 1.07998 1.14274 1.41202 1.19984 0.95441 0.85738 0.94489 1.21221 1.34705 0.97492 1.01700 0.94609 1.25832 0.97035 0.98350 0.97655 1.70054 1.48640 1.13836 1.26405 0.85729 0.79247 0.78832 0.79199 1.19734 1.20610 1.16873 1.20855 0.99932 0.89987 0.92343 1.19059 0.96210 0.95313 1.06759 1.17610 0.86557 0.92381 0.90449 1.42585 1.20292 1.13934 1.63261 1.20982 1.00539 0.93246 1.07560 1.21158 0.92065 1.00481 0.93772 1.20981 1.02802 0.90829 1.05749 1.20749 0.91324 0.91819 0.98439 1.98347 1.64158 1.66115 1.76613 0.91555 0.94051 0.96143 0.94626 0.99998 0.92463 0.90248 0.94405 0.76039 0.77009 0.83270 0.82071 0.84043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.04 7.81 127.69 1.00 3.03 16 2 N -0.53 -22.47 4.74 -931.66 -4.42 -26.89 16 3 C 0.17 8.23 3.79 85.56 0.32 8.56 16 4 C -0.51 -29.98 9.01 25.60 0.23 -29.75 16 5 H 0.04 2.35 7.37 -2.91 -0.02 2.33 16 6 C 0.01 0.49 5.47 84.65 0.46 0.96 16 7 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 8 Si 0.95 44.11 27.47 68.60 1.88 46.00 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 12 C 0.10 3.32 4.46 85.56 0.38 3.70 16 13 C -0.17 -5.07 4.90 -19.71 -0.10 -5.17 16 14 C 0.24 6.19 6.73 38.21 0.26 6.45 16 15 N -0.86 -19.75 8.99 -51.38 -0.46 -20.22 16 16 C -0.20 -4.11 9.90 22.41 0.22 -3.89 16 17 C -0.06 -1.05 10.04 22.25 0.22 -0.83 16 18 C -0.18 -4.15 9.83 22.31 0.22 -3.93 16 19 C 0.00 0.12 5.23 22.30 0.12 0.24 16 20 Cl -0.08 -2.35 24.01 -2.72 -0.07 -2.42 16 21 H 0.07 2.54 5.63 -2.38 -0.01 2.52 16 22 H 0.04 1.97 6.76 -2.39 -0.02 1.95 16 23 H 0.02 0.82 7.08 -2.38 -0.02 0.80 16 24 H 0.04 1.65 6.99 -2.39 -0.02 1.63 16 25 H -0.02 -0.86 7.55 -2.38 -0.02 -0.87 16 26 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 27 H 0.08 2.52 6.34 -2.39 -0.02 2.51 16 28 H 0.04 1.32 6.88 -2.39 -0.02 1.30 16 29 H 0.41 6.85 8.84 -92.71 -0.82 6.03 16 30 H 0.40 10.23 6.83 -92.71 -0.63 9.59 16 31 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 32 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -68.05 279.83 0.21 -67.84 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -0.36 Total: 15.79 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 3.34 Total: -20.63 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -4.58 Total: -106.58 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.07 Total: -2.42 kcal Total: -68.05 0.21 -67.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082582583.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.366 kcal (2) G-P(sol) polarization free energy of solvation -68.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds