Wall clock time and date at job start Mon Mar 30 2020 06:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47404 * 2 1 4 4 C 1.50703 * 109.47180 * 239.99527 * 2 1 3 5 5 H 1.07996 * 120.00602 * 240.00066 * 4 2 1 6 6 C 1.37881 * 119.99370 * 60.00466 * 4 2 1 7 7 N 1.31516 * 120.00255 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99821 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47020 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47447 * 119.99622 * 8 6 4 11 11 H 1.48502 * 109.47278 * 240.00005 * 8 6 4 12 12 N 1.46902 * 109.47043 * 120.00323 * 2 1 3 13 13 C 1.46899 * 111.00338 * 58.95017 * 12 2 1 14 14 C 1.46902 * 110.99823 * 294.99766 * 12 2 1 15 15 C 1.50694 * 109.47286 * 190.00239 * 14 12 2 16 16 C 1.38175 * 119.61394 * 95.00122 * 15 14 12 17 17 C 1.38773 * 119.14480 * 180.27864 * 16 15 14 18 18 Cl 1.73598 * 120.80173 * 179.72518 * 17 16 15 19 19 C 1.38829 * 118.39321 * 359.47914 * 17 16 15 20 20 C 1.38126 * 119.14304 * 0.53851 * 19 17 16 21 21 N 1.31875 * 119.61271 * 275.02183 * 15 14 12 22 22 H 1.09000 * 109.46684 * 300.00430 * 1 2 3 23 23 H 1.08996 * 109.46587 * 59.99947 * 1 2 3 24 24 H 1.08994 * 109.47404 * 180.02562 * 1 2 3 25 25 H 0.96997 * 119.99352 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.47104 * 296.04939 * 13 12 2 27 27 H 1.08998 * 109.46929 * 56.04947 * 13 12 2 28 28 H 1.08997 * 109.47213 * 176.05000 * 13 12 2 29 29 H 1.09001 * 109.47316 * 69.99662 * 14 12 2 30 30 H 1.09007 * 109.46930 * 310.00089 * 14 12 2 31 31 H 1.08002 * 120.42336 * 359.97438 * 16 15 14 32 32 H 1.08001 * 120.42683 * 180.26539 * 19 17 16 33 33 H 1.08000 * 119.60594 * 179.72431 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1464 -2.2872 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8165 12 7 2.0197 -0.6926 1.1994 13 6 1.5283 -2.0762 1.2460 14 6 1.6487 0.0391 2.4181 15 6 2.3679 -0.5572 3.6005 16 6 3.5607 -0.0033 4.0245 17 6 4.2177 -0.5638 5.1108 18 17 5.7223 0.0929 5.6752 19 6 3.6400 -1.6591 5.7384 20 6 2.4452 -2.1574 5.2569 21 7 1.8517 -1.6017 4.2183 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.7089 1.1612 -3.4844 26 1 0.4419 -2.0731 1.3347 27 1 1.8167 -2.5951 0.3319 28 1 1.9616 -2.5869 2.1059 29 1 0.5722 -0.0345 2.5726 30 1 1.9298 1.0870 2.3125 31 1 3.9788 0.8516 3.5139 32 1 4.1209 -2.1184 6.5894 33 1 1.9914 -3.0120 5.7367 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086130122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:08 Heat of formation + Delta-G solvation = 36.566091 kcal Electronic energy + Delta-G solvation = -16446.866732 eV Core-core repulsion = 13726.736455 eV Total energy + Delta-G solvation = -2720.130277 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.25808 -37.19937 -36.68413 -33.10762 -32.06792 -31.57122 -28.59803 -26.98337 -25.15971 -24.11006 -23.49069 -21.66944 -19.26257 -17.02558 -16.56367 -16.15292 -15.56534 -15.24176 -14.51834 -13.93849 -13.79467 -13.68426 -13.32763 -12.70027 -12.54448 -12.16192 -12.02291 -11.50160 -11.12317 -11.05035 -10.95337 -10.77680 -10.64997 -10.47081 -10.02155 -9.93113 -9.46669 -9.40356 -9.07742 -8.83209 -8.39244 -7.18829 -6.01408 -4.04807 1.03983 1.09744 1.87013 3.30513 3.38462 3.43162 3.70366 4.33532 4.43419 4.67498 4.85257 5.07183 5.23596 5.31584 5.38792 5.59324 5.71337 5.90486 6.06747 6.17848 6.34645 6.51221 6.58357 6.72154 6.85742 6.96507 7.11436 7.46000 7.71800 7.82422 8.00885 8.09800 8.36833 8.56474 9.01066 9.60149 11.05800 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.030984 B = 0.004865 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.461622 B = 5754.535531 C = 6077.993634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.529 5.529 13 C 0.037 3.963 14 C 0.097 3.903 15 C 0.170 3.830 16 C -0.147 4.147 17 C 0.008 3.992 18 Cl -0.062 7.062 19 C -0.179 4.179 20 C 0.112 3.888 21 N -0.475 5.475 22 H 0.008 0.992 23 H 0.088 0.912 24 H 0.031 0.969 25 H 0.260 0.740 26 H 0.019 0.981 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -2.612 15.718 16.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.058 0.942 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.253 5.253 13 C -0.111 4.111 14 C -0.032 4.032 15 C 0.032 3.968 16 C -0.168 4.168 17 C -0.027 4.027 18 Cl -0.033 7.033 19 C -0.200 4.200 20 C -0.046 4.046 21 N -0.184 5.184 22 H 0.027 0.973 23 H 0.107 0.893 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.999 -2.788 15.280 16.038 hybrid contribution 0.391 -0.018 -0.409 0.566 sum 4.390 -2.806 14.870 15.757 Atomic orbital electron populations 1.22408 1.00674 0.99552 1.00556 1.19355 0.89917 0.94561 0.85669 0.94164 1.21138 1.30523 1.12463 0.89554 0.91867 1.24919 0.95224 0.95136 0.98985 1.69894 1.37077 1.23092 1.23306 0.86466 0.78524 0.79675 0.82892 1.19766 1.21171 1.21065 1.62426 1.59478 1.02385 1.01003 1.22234 0.97180 0.90546 1.01153 1.21011 0.97077 0.97505 0.87636 1.21481 0.91050 0.89976 0.94311 1.21968 0.96079 1.02630 0.96128 1.21293 0.88996 0.96011 0.96374 1.98381 1.31111 1.85302 1.88505 1.22007 0.98213 0.97242 1.02572 1.22763 0.91420 0.98230 0.92144 1.67600 1.34258 1.09136 1.07455 0.97316 0.89297 0.94960 0.93057 0.96200 0.91041 0.93479 0.93109 0.89714 0.83581 0.84212 0.82172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.28 37.16 0.31 -3.83 16 2 C 0.21 5.22 2.34 -68.86 -0.16 5.05 16 3 H 0.04 1.08 8.03 -51.93 -0.42 0.66 16 4 C -0.50 -13.50 7.88 -34.44 -0.27 -13.77 16 5 H 0.06 1.74 6.77 -52.49 -0.36 1.38 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.53 -11.36 4.73 -237.73 -1.13 -12.48 16 13 C 0.04 0.77 8.48 60.06 0.51 1.28 16 14 C 0.10 1.75 4.72 -4.98 -0.02 1.73 16 15 C 0.17 2.74 5.69 -82.60 -0.47 2.27 16 16 C -0.15 -2.11 9.54 -39.41 -0.38 -2.49 16 17 C 0.01 0.10 6.37 -39.16 -0.25 -0.15 16 18 Cl -0.06 -0.70 29.02 -51.86 -1.50 -2.20 16 19 C -0.18 -2.00 9.94 -39.40 -0.39 -2.40 16 20 C 0.11 1.35 11.18 -17.56 -0.20 1.16 16 21 N -0.47 -7.36 8.84 -9.49 -0.08 -7.44 16 22 H 0.01 0.17 6.75 -51.93 -0.35 -0.18 16 23 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 24 H 0.03 0.76 6.47 -51.93 -0.34 0.42 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.02 0.41 6.51 -51.93 -0.34 0.07 16 27 H 0.07 1.57 6.41 -51.93 -0.33 1.23 16 28 H 0.05 0.90 6.35 -51.93 -0.33 0.57 16 29 H 0.05 0.95 6.94 -51.93 -0.36 0.59 16 30 H 0.08 1.45 7.90 -51.93 -0.41 1.04 16 31 H 0.15 1.98 8.06 -52.49 -0.42 1.55 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 285.19 15.07 4.30 4.30 Total: -1.00 -28.56 285.19 -8.18 -36.73 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -3.95 Total: -0.96 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -1.42 Total: -9.64 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.58 Total: -44.47 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.56 -8.18 -36.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086130122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.298 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds