Wall clock time and date at job start Mon Mar 30 2020 06:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47404 * 2 1 4 4 C 1.50703 * 109.47180 * 239.99527 * 2 1 3 5 5 H 1.07996 * 120.00602 * 240.00066 * 4 2 1 6 6 C 1.37881 * 119.99370 * 60.00466 * 4 2 1 7 7 N 1.31516 * 120.00255 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99821 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47020 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47447 * 119.99622 * 8 6 4 11 11 H 1.48502 * 109.47278 * 240.00005 * 8 6 4 12 12 N 1.46902 * 109.47043 * 120.00323 * 2 1 3 13 13 C 1.46899 * 111.00338 * 58.95017 * 12 2 1 14 14 C 1.46902 * 110.99823 * 294.99766 * 12 2 1 15 15 C 1.50694 * 109.47286 * 190.00239 * 14 12 2 16 16 C 1.38175 * 119.61394 * 95.00122 * 15 14 12 17 17 C 1.38773 * 119.14480 * 180.27864 * 16 15 14 18 18 Cl 1.73598 * 120.80173 * 179.72518 * 17 16 15 19 19 C 1.38829 * 118.39321 * 359.47914 * 17 16 15 20 20 C 1.38126 * 119.14304 * 0.53851 * 19 17 16 21 21 N 1.31875 * 119.61271 * 275.02183 * 15 14 12 22 22 H 1.09000 * 109.46684 * 300.00430 * 1 2 3 23 23 H 1.08996 * 109.46587 * 59.99947 * 1 2 3 24 24 H 1.08994 * 109.47404 * 180.02562 * 1 2 3 25 25 H 0.96997 * 119.99352 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.47104 * 296.04939 * 13 12 2 27 27 H 1.08998 * 109.46929 * 56.04947 * 13 12 2 28 28 H 1.08997 * 109.47213 * 176.05000 * 13 12 2 29 29 H 1.09001 * 109.47316 * 69.99662 * 14 12 2 30 30 H 1.09007 * 109.46930 * 310.00089 * 14 12 2 31 31 H 1.08002 * 120.42336 * 359.97438 * 16 15 14 32 32 H 1.08001 * 120.42683 * 180.26539 * 19 17 16 33 33 H 1.08000 * 119.60594 * 179.72431 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1464 -2.2872 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8165 12 7 2.0197 -0.6926 1.1994 13 6 1.5283 -2.0762 1.2460 14 6 1.6487 0.0391 2.4181 15 6 2.3679 -0.5572 3.6005 16 6 3.5607 -0.0033 4.0245 17 6 4.2177 -0.5638 5.1108 18 17 5.7223 0.0929 5.6752 19 6 3.6400 -1.6591 5.7384 20 6 2.4452 -2.1574 5.2569 21 7 1.8517 -1.6017 4.2183 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.7089 1.1612 -3.4844 26 1 0.4419 -2.0731 1.3347 27 1 1.8167 -2.5951 0.3319 28 1 1.9616 -2.5869 2.1059 29 1 0.5722 -0.0345 2.5726 30 1 1.9298 1.0870 2.3125 31 1 3.9788 0.8516 3.5139 32 1 4.1209 -2.1184 6.5894 33 1 1.9914 -3.0120 5.7367 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086130122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:08 Heat of formation + Delta-G solvation = 19.134377 kcal Electronic energy + Delta-G solvation = -16447.622628 eV Core-core repulsion = 13726.736455 eV Total energy + Delta-G solvation = -2720.886173 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.34127 -38.82528 -37.69863 -34.93712 -33.14958 -32.93090 -30.40595 -28.46977 -27.18797 -25.67271 -24.52552 -23.00556 -21.05344 -18.32862 -17.92262 -17.61732 -17.10886 -16.51147 -16.25960 -15.37745 -15.18911 -14.92633 -14.70784 -14.31220 -14.06720 -13.49307 -13.23434 -13.10038 -12.82799 -12.75336 -12.61510 -12.50717 -12.25721 -12.03700 -11.98612 -11.73877 -10.92513 -10.53582 -10.48526 -10.44115 -10.08493 -8.90805 -8.09869 -6.20108 0.00575 0.08972 0.91308 1.42416 1.44662 1.56059 2.43364 2.63778 3.19717 3.24220 3.62599 3.68609 3.89910 4.07403 4.27349 4.46495 4.59594 4.65615 4.74038 4.76870 4.85676 4.88425 4.94491 4.98055 5.15901 5.20357 5.53636 5.58489 5.71632 5.79275 6.16865 6.44655 6.68413 6.91989 6.97755 7.48717 8.96540 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.030984 B = 0.004865 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.461622 B = 5754.535531 C = 6077.993634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.014 0.986 4 C -0.513 4.513 5 H 0.055 0.945 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.537 5.537 13 C 0.050 3.950 14 C 0.101 3.899 15 C 0.148 3.852 16 C -0.156 4.156 17 C 0.002 3.998 18 Cl -0.049 7.049 19 C -0.162 4.162 20 C 0.111 3.889 21 N -0.499 5.499 22 H 0.026 0.974 23 H 0.063 0.937 24 H 0.029 0.971 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.145 0.855 32 H 0.175 0.825 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.059 -3.834 17.242 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.109 3.891 3 H 0.032 0.968 4 C -0.552 4.552 5 H 0.073 0.927 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.784 3.216 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.261 5.261 13 C -0.098 4.098 14 C -0.027 4.027 15 C 0.011 3.989 16 C -0.177 4.177 17 C -0.033 4.033 18 Cl -0.020 7.020 19 C -0.182 4.182 20 C -0.046 4.046 21 N -0.210 5.210 22 H 0.045 0.955 23 H 0.082 0.918 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.163 0.837 32 H 0.193 0.807 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.849 -4.007 16.817 17.955 hybrid contribution 0.179 0.351 -0.734 0.833 sum 5.028 -3.656 16.083 17.243 Atomic orbital electron populations 1.22203 1.00219 0.99170 1.00144 1.19114 0.90115 0.93209 0.86710 0.96814 1.21373 1.30570 1.12388 0.90857 0.92694 1.25649 0.95396 0.95804 1.01695 1.70010 1.37830 1.24138 1.23954 0.85505 0.78047 0.78625 0.79424 1.19440 1.20679 1.20664 1.62284 1.59670 1.02793 1.01311 1.22096 0.96907 0.90035 1.00803 1.20937 0.97037 0.97553 0.87216 1.21053 0.91976 0.91371 0.94488 1.21948 0.95845 1.02911 0.97032 1.21414 0.89475 0.96394 0.96000 1.98388 1.30172 1.85239 1.88189 1.22406 0.97420 0.95863 1.02558 1.23376 0.91587 0.98627 0.91036 1.67523 1.35279 1.09301 1.08885 0.95463 0.91830 0.95169 0.92952 0.96544 0.92868 0.91898 0.93827 0.89536 0.83678 0.80736 0.78660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.70 8.28 71.98 0.60 -7.11 16 2 C 0.22 10.91 2.34 44.17 0.10 11.01 16 3 H 0.01 0.77 8.03 -2.39 -0.02 0.75 16 4 C -0.51 -28.29 7.88 25.60 0.20 -28.09 16 5 H 0.05 3.06 6.77 -2.91 -0.02 3.04 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -52.54 11.32 21.45 0.24 -52.29 16 8 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 N -0.54 -23.33 4.73 -906.04 -4.29 -27.61 16 13 C 0.05 2.06 8.48 127.69 1.08 3.14 16 14 C 0.10 3.70 4.72 85.55 0.40 4.10 16 15 C 0.15 4.68 5.69 42.54 0.24 4.92 16 16 C -0.16 -4.34 9.54 22.38 0.21 -4.13 16 17 C 0.00 0.05 6.37 22.54 0.14 0.19 16 18 Cl -0.05 -0.99 29.02 -2.72 -0.08 -1.07 16 19 C -0.16 -3.04 9.94 22.38 0.22 -2.82 16 20 C 0.11 2.33 11.18 84.66 0.95 3.28 16 21 N -0.50 -14.64 8.84 -183.95 -1.63 -16.27 16 22 H 0.03 1.17 6.75 -2.39 -0.02 1.16 16 23 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 24 H 0.03 1.43 6.47 -2.39 -0.02 1.42 16 25 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 26 H 0.02 0.67 6.51 -2.39 -0.02 0.65 16 27 H 0.05 2.35 6.41 -2.39 -0.02 2.34 16 28 H 0.06 2.37 6.35 -2.39 -0.02 2.35 16 29 H 0.04 1.63 6.94 -2.39 -0.02 1.62 16 30 H 0.09 3.04 7.90 -2.38 -0.02 3.02 16 31 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 32 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.20 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -61.25 285.19 1.99 -59.25 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.11 Total: 6.47 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 4.60 Total: -14.33 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -5.67 Total: -96.18 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -61.25 1.99 -59.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086130122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.388 kcal (2) G-P(sol) polarization free energy of solvation -61.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds