Wall clock time and date at job start Mon Mar 30 2020 06:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46792 * 2 1 4 4 O 1.42897 * 109.47229 * 240.00205 * 2 1 3 5 5 C 1.50699 * 109.47214 * 119.99526 * 2 1 3 6 6 C 1.38178 * 120.01240 * 95.00669 * 5 2 1 7 7 C 1.38433 * 120.02849 * 180.29718 * 6 5 2 8 8 F 1.35097 * 119.96527 * 179.70021 * 7 6 5 9 9 C 1.38482 * 120.05764 * 359.44546 * 7 6 5 10 10 C 1.38119 * 120.03239 * 0.55605 * 9 7 6 11 11 C 1.38685 * 120.01849 * 275.02692 * 5 2 1 12 12 O 1.35946 * 120.02896 * 359.95233 * 11 5 2 13 13 C 1.42901 * 116.99820 * 179.97438 * 12 11 5 14 14 C 1.53007 * 109.46898 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46897 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00162 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99820 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99848 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99929 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47227 * 90.00269 * 19 17 15 21 21 H 1.48504 * 109.46856 * 209.99997 * 19 17 15 22 22 H 1.48495 * 109.47352 * 329.99970 * 19 17 15 23 23 H 1.09001 * 109.47231 * 299.99580 * 1 2 3 24 24 H 1.08998 * 109.47246 * 60.00354 * 1 2 3 25 25 H 1.09004 * 109.46792 * 180.02562 * 1 2 3 26 26 H 0.96697 * 113.99932 * 179.97438 * 4 2 1 27 27 H 1.08002 * 119.98243 * 0.02562 * 6 5 2 28 28 H 1.08004 * 119.97990 * 180.24970 * 9 7 6 29 29 H 1.08004 * 120.01862 * 179.70258 * 10 9 7 30 30 H 1.08993 * 109.47311 * 300.00246 * 13 12 11 31 31 H 1.08996 * 109.46831 * 60.00498 * 13 12 11 32 32 H 1.08993 * 109.47197 * 300.00140 * 14 13 12 33 33 H 1.08998 * 109.46840 * 60.00052 * 14 13 12 34 34 H 0.96996 * 119.99634 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0323 -0.7103 1.2305 6 6 2.3612 -2.0510 1.1688 7 6 2.8168 -2.7053 2.3005 8 9 3.1322 -4.0175 2.2402 9 6 2.9546 -2.0146 3.4928 10 6 2.6266 -0.6745 3.5573 11 6 2.1644 -0.0189 2.4254 12 8 1.8418 1.3003 2.4874 13 6 2.0020 1.9487 3.7507 14 6 1.5919 3.4175 3.6257 15 6 1.7615 4.1014 4.9577 16 1 2.1257 3.5444 5.8083 17 6 1.4516 5.4384 5.0906 18 7 1.6001 6.0354 6.2530 19 14 0.8223 6.4020 3.6193 20 1 -0.6595 6.3187 3.5701 21 1 1.2343 7.8231 3.7454 22 1 1.3918 5.8302 2.3728 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.9703 -0.7114 -1.2331 27 1 2.2585 -2.5896 0.2384 28 1 3.3141 -2.5254 4.3740 29 1 2.7296 -0.1372 4.4886 30 1 1.3728 1.4581 4.4933 31 1 3.0451 1.8875 4.0607 32 1 2.2207 3.9083 2.8830 33 1 0.5487 3.4783 3.3158 34 1 1.3824 6.9760 6.3464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087111717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:07 Heat of formation + Delta-G solvation = -123.767278 kcal Electronic energy + Delta-G solvation = -18370.150318 eV Core-core repulsion = 15182.438338 eV Total energy + Delta-G solvation = -3187.711980 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.81612 -40.27160 -37.78145 -36.54835 -33.44444 -32.22776 -30.89772 -30.02289 -28.70283 -25.44279 -24.00952 -22.36100 -21.28104 -20.48007 -18.26539 -17.67099 -17.20416 -16.56469 -16.22415 -15.81040 -15.36811 -14.85559 -14.53480 -14.30584 -14.12010 -13.87151 -12.97325 -12.86696 -12.77993 -12.40269 -12.36860 -12.14873 -11.73123 -11.54935 -11.38925 -10.87374 -10.80565 -10.33520 -10.14484 -10.06863 -9.88595 -9.43149 -9.08535 -8.69397 -7.97013 -6.20376 -4.22141 1.06640 1.22930 3.23064 3.30948 3.34844 3.49006 3.52618 4.11275 4.27026 4.32442 4.53969 4.79035 4.98751 5.13635 5.18045 5.21875 5.31766 5.61625 5.68546 5.77905 5.78281 5.84736 5.87991 6.10463 6.13537 6.17779 6.27189 6.35846 6.68977 6.95707 7.12331 7.50584 7.52986 7.68698 8.30669 8.79772 9.39462 10.92072 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.026449 B = 0.005084 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.370261 B = 5505.865049 C = 6409.846443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.153 3.847 3 H 0.076 0.924 4 O -0.565 6.565 5 C -0.141 4.141 6 C -0.102 4.102 7 C 0.045 3.955 8 F -0.146 7.146 9 C -0.109 4.109 10 C -0.183 4.183 11 C 0.145 3.855 12 O -0.313 6.313 13 C 0.070 3.930 14 C -0.008 4.008 15 C -0.530 4.530 16 H 0.074 0.926 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.880 3.120 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.263 1.263 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.378 0.622 27 H 0.144 0.856 28 H 0.135 0.865 29 H 0.144 0.856 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.024 0.976 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.459 -14.463 -10.369 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.095 3.905 3 H 0.094 0.906 4 O -0.370 6.370 5 C -0.142 4.142 6 C -0.121 4.121 7 C 0.026 3.974 8 F -0.125 7.125 9 C -0.128 4.128 10 C -0.202 4.202 11 C 0.098 3.902 12 O -0.226 6.226 13 C -0.004 4.004 14 C -0.045 4.045 15 C -0.567 4.567 16 H 0.093 0.907 17 C -0.129 4.129 18 N -0.534 5.534 19 Si 0.707 3.293 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.188 1.188 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.225 0.775 27 H 0.161 0.839 28 H 0.153 0.847 29 H 0.161 0.839 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.729 -14.241 -10.520 17.720 hybrid contribution 0.458 0.340 -0.044 0.572 sum 1.186 -13.901 -10.564 17.500 Atomic orbital electron populations 1.21727 0.92262 1.02652 1.02954 1.20488 0.95310 0.94285 0.80459 0.90630 1.86487 1.26846 1.80268 1.43446 1.19796 1.05590 0.93656 0.95202 1.20726 0.99519 0.93670 0.98163 1.17482 1.06088 0.78628 0.95249 1.91463 1.91187 1.32703 1.97119 1.20955 1.00441 0.94423 0.96957 1.21257 1.04802 0.94990 0.99157 1.18929 0.93543 0.84656 0.93090 1.86138 1.80621 1.18394 1.37464 1.23169 1.00658 0.95220 0.81349 1.19581 0.97306 0.88699 0.98931 1.20817 1.45967 0.95368 0.94576 0.90739 1.24929 0.94642 0.97450 0.95896 1.69888 1.48156 1.11711 1.23650 0.86764 0.79672 0.79272 0.83592 1.20007 1.21128 1.18768 0.90422 0.91646 0.92155 0.77512 0.83875 0.84678 0.83868 0.92270 0.92284 0.95383 0.95765 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.54 37.16 0.35 -1.33 16 2 C 0.15 1.93 3.52 -27.88 -0.10 1.83 16 3 H 0.08 1.01 7.69 -51.93 -0.40 0.61 16 4 O -0.56 -6.38 12.17 -35.23 -0.43 -6.81 16 5 C -0.14 -1.88 5.05 -104.48 -0.53 -2.41 16 6 C -0.10 -1.26 9.31 -39.53 -0.37 -1.63 16 7 C 0.04 0.58 7.30 -39.42 -0.29 0.29 16 8 F -0.15 -1.90 17.27 2.25 0.04 -1.86 16 9 C -0.11 -1.36 10.02 -39.54 -0.40 -1.76 16 10 C -0.18 -2.53 9.04 -39.44 -0.36 -2.88 16 11 C 0.15 2.18 6.66 -39.23 -0.26 1.92 16 12 O -0.31 -5.40 9.27 -19.57 -0.18 -5.58 16 13 C 0.07 1.31 4.68 37.16 0.17 1.49 16 14 C -0.01 -0.18 4.41 -27.88 -0.12 -0.30 16 15 C -0.53 -14.32 9.66 -34.44 -0.33 -14.66 16 16 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -26.59 13.96 55.43 0.77 -25.81 16 19 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 23 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.38 2.95 9.06 45.56 0.41 3.37 16 27 H 0.14 1.57 7.35 -52.49 -0.39 1.18 16 28 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 29 H 0.14 1.90 6.30 -52.48 -0.33 1.57 16 30 H 0.06 1.07 7.66 -51.93 -0.40 0.67 16 31 H 0.06 1.07 7.66 -51.93 -0.40 0.67 16 32 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 33 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 34 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 294.80 15.07 4.44 4.44 Total: -1.00 -29.58 294.80 -5.89 -35.47 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -3.54 Total: 1.43 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -2.32 Total: -17.49 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.77 Total: -25.81 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.61 Total: -12.39 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.58 -5.89 -35.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087111717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.300 kcal (2) G-P(sol) polarization free energy of solvation -29.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds