Wall clock time and date at job start Mon Mar 30 2020 06:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46792 * 2 1 4 4 O 1.42897 * 109.47229 * 240.00205 * 2 1 3 5 5 C 1.50699 * 109.47214 * 119.99526 * 2 1 3 6 6 C 1.38178 * 120.01240 * 95.00669 * 5 2 1 7 7 C 1.38433 * 120.02849 * 180.29718 * 6 5 2 8 8 F 1.35097 * 119.96527 * 179.70021 * 7 6 5 9 9 C 1.38482 * 120.05764 * 359.44546 * 7 6 5 10 10 C 1.38119 * 120.03239 * 0.55605 * 9 7 6 11 11 C 1.38685 * 120.01849 * 275.02692 * 5 2 1 12 12 O 1.35946 * 120.02896 * 359.95233 * 11 5 2 13 13 C 1.42901 * 116.99820 * 179.97438 * 12 11 5 14 14 C 1.53007 * 109.46898 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46897 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00162 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99820 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99848 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99929 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47227 * 90.00269 * 19 17 15 21 21 H 1.48504 * 109.46856 * 209.99997 * 19 17 15 22 22 H 1.48495 * 109.47352 * 329.99970 * 19 17 15 23 23 H 1.09001 * 109.47231 * 299.99580 * 1 2 3 24 24 H 1.08998 * 109.47246 * 60.00354 * 1 2 3 25 25 H 1.09004 * 109.46792 * 180.02562 * 1 2 3 26 26 H 0.96697 * 113.99932 * 179.97438 * 4 2 1 27 27 H 1.08002 * 119.98243 * 0.02562 * 6 5 2 28 28 H 1.08004 * 119.97990 * 180.24970 * 9 7 6 29 29 H 1.08004 * 120.01862 * 179.70258 * 10 9 7 30 30 H 1.08993 * 109.47311 * 300.00246 * 13 12 11 31 31 H 1.08996 * 109.46831 * 60.00498 * 13 12 11 32 32 H 1.08993 * 109.47197 * 300.00140 * 14 13 12 33 33 H 1.08998 * 109.46840 * 60.00052 * 14 13 12 34 34 H 0.96996 * 119.99634 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0323 -0.7103 1.2305 6 6 2.3612 -2.0510 1.1688 7 6 2.8168 -2.7053 2.3005 8 9 3.1322 -4.0175 2.2402 9 6 2.9546 -2.0146 3.4928 10 6 2.6266 -0.6745 3.5573 11 6 2.1644 -0.0189 2.4254 12 8 1.8418 1.3003 2.4874 13 6 2.0020 1.9487 3.7507 14 6 1.5919 3.4175 3.6257 15 6 1.7615 4.1014 4.9577 16 1 2.1257 3.5444 5.8083 17 6 1.4516 5.4384 5.0906 18 7 1.6001 6.0354 6.2530 19 14 0.8223 6.4020 3.6193 20 1 -0.6595 6.3187 3.5701 21 1 1.2343 7.8231 3.7454 22 1 1.3918 5.8302 2.3728 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.9703 -0.7114 -1.2331 27 1 2.2585 -2.5896 0.2384 28 1 3.3141 -2.5254 4.3740 29 1 2.7296 -0.1372 4.4886 30 1 1.3728 1.4581 4.4933 31 1 3.0451 1.8875 4.0607 32 1 2.2207 3.9083 2.8830 33 1 0.5487 3.4783 3.3158 34 1 1.3824 6.9760 6.3464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087111717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:07 Heat of formation + Delta-G solvation = -142.802245 kcal Electronic energy + Delta-G solvation = -18370.975736 eV Core-core repulsion = 15182.438338 eV Total energy + Delta-G solvation = -3188.537398 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.84150 -41.40178 -38.92095 -37.56417 -35.40021 -33.33296 -32.60716 -31.06081 -29.82952 -27.15164 -25.06704 -23.68678 -22.51456 -21.86110 -19.59251 -18.86042 -18.44242 -18.07434 -17.31101 -17.08035 -16.49508 -16.31355 -15.82090 -15.65213 -15.14933 -15.09533 -14.58718 -14.30198 -13.97991 -13.78667 -13.36852 -13.18219 -13.09185 -12.92387 -12.58885 -12.46164 -12.17766 -11.90024 -11.77062 -11.52553 -11.45769 -11.06131 -10.80580 -10.09122 -9.09374 -8.34033 -6.40737 0.05535 0.15669 1.37398 1.39139 1.50784 2.21050 2.33861 2.45911 3.01750 3.16870 3.31633 3.53916 3.79698 3.99859 4.09685 4.22456 4.23766 4.30640 4.35381 4.57114 4.67001 4.71513 4.88088 4.93553 5.08938 5.11254 5.13781 5.22837 5.29051 5.32249 5.52128 5.71399 6.16553 6.36197 6.65929 6.78590 7.24787 8.81664 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.026449 B = 0.005084 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.370261 B = 5505.865049 C = 6409.846443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.156 3.844 3 H 0.066 0.934 4 O -0.567 6.567 5 C -0.137 4.137 6 C -0.096 4.096 7 C 0.044 3.956 8 F -0.145 7.145 9 C -0.107 4.107 10 C -0.188 4.188 11 C 0.121 3.879 12 O -0.321 6.321 13 C 0.083 3.917 14 C -0.006 4.006 15 C -0.536 4.536 16 H 0.043 0.957 17 C 0.014 3.986 18 N -0.944 5.944 19 Si 0.947 3.053 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.247 1.247 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.393 0.607 27 H 0.160 0.840 28 H 0.157 0.843 29 H 0.144 0.856 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.306 -15.529 -12.233 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.097 3.903 3 H 0.084 0.916 4 O -0.375 6.375 5 C -0.139 4.139 6 C -0.114 4.114 7 C 0.025 3.975 8 F -0.124 7.124 9 C -0.126 4.126 10 C -0.207 4.207 11 C 0.075 3.925 12 O -0.235 6.235 13 C 0.009 3.991 14 C -0.043 4.043 15 C -0.574 4.574 16 H 0.061 0.939 17 C -0.184 4.184 18 N -0.584 5.584 19 Si 0.770 3.230 20 H -0.190 1.190 21 H -0.208 1.208 22 H -0.171 1.171 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.243 0.757 27 H 0.178 0.822 28 H 0.175 0.825 29 H 0.162 0.838 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.592 -15.340 -12.399 19.733 hybrid contribution 0.566 0.522 0.556 0.950 sum 1.157 -14.818 -11.843 19.005 Atomic orbital electron populations 1.21717 0.92095 1.02917 1.02866 1.20386 0.95493 0.93817 0.80566 0.91577 1.86462 1.28465 1.79937 1.42662 1.19895 1.05145 0.93924 0.94901 1.20865 0.98652 0.93197 0.98734 1.17618 1.05730 0.78651 0.95526 1.91470 1.91145 1.32676 1.97126 1.21156 0.99726 0.93889 0.97780 1.21332 1.04865 0.95606 0.98904 1.19150 0.95218 0.83825 0.94314 1.86064 1.81485 1.19809 1.36109 1.22758 1.00771 0.93287 0.82301 1.19434 0.97561 0.91022 0.96323 1.21129 1.45004 0.95611 0.95650 0.93909 1.25864 0.94987 0.98727 0.98832 1.70027 1.49941 1.12278 1.26106 0.85710 0.79448 0.77623 0.80251 1.19019 1.20822 1.17093 0.91428 0.90850 0.91704 0.75737 0.82227 0.82534 0.83791 0.91982 0.91990 0.95297 0.95343 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.54 71.98 0.69 -2.46 16 2 C 0.16 3.65 3.52 29.85 0.10 3.76 16 3 H 0.07 1.67 7.69 -2.38 -0.02 1.66 16 4 O -0.57 -11.41 12.17 -148.98 -1.81 -13.23 16 5 C -0.14 -3.41 5.05 -19.77 -0.10 -3.51 16 6 C -0.10 -2.13 9.31 22.30 0.21 -1.92 16 7 C 0.04 1.02 7.30 22.37 0.16 1.19 16 8 F -0.15 -3.42 17.27 44.97 0.78 -2.64 16 9 C -0.11 -2.44 10.02 22.30 0.22 -2.22 16 10 C -0.19 -4.94 9.04 22.36 0.20 -4.74 16 11 C 0.12 3.49 6.66 22.49 0.15 3.64 16 12 O -0.32 -10.76 9.27 -92.94 -0.86 -11.62 16 13 C 0.08 3.08 4.68 71.98 0.34 3.42 16 14 C -0.01 -0.27 4.41 29.85 0.13 -0.13 16 15 C -0.54 -29.40 9.66 25.60 0.25 -29.16 16 16 H 0.04 2.54 7.99 -2.91 -0.02 2.52 16 17 C 0.01 0.79 5.47 84.65 0.46 1.25 16 18 N -0.94 -57.11 13.96 21.45 0.30 -56.81 16 19 Si 0.95 42.63 27.47 68.60 1.88 44.52 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16 23 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.39 5.13 9.06 -74.06 -0.67 4.46 16 27 H 0.16 3.01 7.35 -2.91 -0.02 2.99 16 28 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 29 H 0.14 3.70 6.30 -2.91 -0.02 3.68 16 30 H 0.06 2.23 7.66 -2.39 -0.02 2.21 16 31 H 0.06 2.23 7.66 -2.39 -0.02 2.21 16 32 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 33 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 34 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -62.57 294.80 3.49 -59.08 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.39 Total: 11.60 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 2.82 Total: -30.90 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.30 Total: -56.81 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -2.67 Total: -24.85 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.52 kcal Total: -62.57 3.49 -59.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087111717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.727 kcal (2) G-P(sol) polarization free energy of solvation -62.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds