Wall clock time and date at job start Mon Mar 30 2020 06:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 O 1.42903 * 109.46459 * 119.99893 * 2 1 3 5 5 C 1.50696 * 109.47222 * 239.99559 * 2 1 3 6 6 C 1.38168 * 120.01874 * 264.72446 * 5 2 1 7 7 C 1.38436 * 120.03461 * 179.79525 * 6 5 2 8 8 F 1.35096 * 119.97185 * 180.23557 * 7 6 5 9 9 C 1.38479 * 120.05525 * 0.45864 * 7 6 5 10 10 C 1.38127 * 120.03057 * 359.79891 * 9 7 6 11 11 C 1.38682 * 120.01191 * 85.00478 * 5 2 1 12 12 O 1.35943 * 120.03426 * 359.95336 * 11 5 2 13 13 C 1.42898 * 117.00240 * 179.97438 * 12 11 5 14 14 C 1.52997 * 109.47039 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47361 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99608 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00625 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99785 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00553 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46737 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47296 * 119.99841 * 19 17 15 22 22 H 1.48506 * 109.47022 * 240.00260 * 19 17 15 23 23 H 1.08997 * 109.47258 * 300.00172 * 1 2 3 24 24 H 1.08997 * 109.46943 * 60.00345 * 1 2 3 25 25 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 26 26 H 0.96700 * 114.00311 * 60.00313 * 4 2 1 27 27 H 1.08004 * 119.98500 * 0.02562 * 6 5 2 28 28 H 1.07995 * 119.98385 * 179.77085 * 9 7 6 29 29 H 1.07998 * 120.01611 * 179.97438 * 10 9 7 30 30 H 1.08990 * 109.47530 * 300.00077 * 13 12 11 31 31 H 1.09010 * 109.46826 * 60.00445 * 13 12 11 32 32 H 1.09001 * 109.47319 * 300.00066 * 14 13 12 33 33 H 1.09001 * 109.47337 * 60.00325 * 14 13 12 34 34 H 0.96992 * 120.00221 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.0324 -0.7105 -1.2304 6 6 2.3665 -2.0497 -1.1672 7 6 2.8240 -2.7037 -2.2983 8 9 3.1458 -4.0143 -2.2363 9 6 2.9564 -2.0145 -3.4921 10 6 2.6281 -0.6744 -3.5568 11 6 2.1650 -0.0189 -2.4251 12 8 1.8412 1.2999 -2.4876 13 6 2.0032 1.9487 -3.7504 14 6 1.5914 3.4169 -3.6260 15 6 1.7616 4.1010 -4.9579 16 1 2.1274 3.5443 -5.8081 17 6 1.4514 5.4378 -5.0911 18 7 1.0064 6.1159 -4.0557 19 14 1.6631 6.2860 -6.7419 20 1 2.1751 5.3103 -7.7375 21 1 0.3533 6.8172 -7.1971 22 1 2.6299 7.4047 -6.6033 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.7209 -1.5952 1.2330 27 1 2.2672 -2.5874 -0.2359 28 1 3.3169 -2.5250 -4.3729 29 1 2.7319 -0.1371 -4.4878 30 1 3.0469 1.8886 -4.0586 31 1 1.3757 1.4575 -4.4943 32 1 0.5474 3.4767 -3.3181 33 1 2.2183 3.9084 -2.8820 34 1 0.7886 7.0564 -4.1492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087111718.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:10 Heat of formation + Delta-G solvation = -126.979282 kcal Electronic energy + Delta-G solvation = -18316.423846 eV Core-core repulsion = 15128.572583 eV Total energy + Delta-G solvation = -3187.851263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.80621 -40.23078 -37.80851 -36.51541 -33.45906 -32.06556 -30.51607 -29.92329 -28.54278 -25.22884 -24.13195 -22.47808 -21.46254 -20.63256 -18.36920 -17.41152 -16.79851 -16.17704 -16.03315 -15.70995 -15.29068 -14.82812 -14.66639 -14.59978 -14.16676 -13.78960 -13.10350 -12.92991 -12.49427 -12.32932 -12.32250 -11.91883 -11.55588 -11.37144 -11.15000 -10.92715 -10.81131 -10.65657 -10.17164 -9.93719 -9.74526 -9.35945 -9.04937 -8.51192 -7.89531 -6.16357 -4.21404 1.10555 1.27276 3.22758 3.30020 3.33050 3.54038 3.61331 4.19982 4.35386 4.39274 4.56181 4.71404 4.98405 5.20418 5.20502 5.23420 5.27508 5.57577 5.67320 5.80736 5.89479 5.90878 5.92912 6.12556 6.18576 6.19313 6.39486 6.55683 6.74029 7.38720 7.53254 7.55044 7.68973 7.90321 8.15978 8.84197 9.43580 10.95117 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.027419 B = 0.004674 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.946820 B = 5989.431048 C = 6866.068296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.153 3.847 3 H 0.120 0.880 4 O -0.558 6.558 5 C -0.132 4.132 6 C -0.110 4.110 7 C 0.047 3.953 8 F -0.146 7.146 9 C -0.111 4.111 10 C -0.182 4.182 11 C 0.146 3.854 12 O -0.309 6.309 13 C 0.063 3.937 14 C 0.026 3.974 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.369 0.631 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.143 0.857 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.028 0.972 33 H 0.029 0.971 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.917 -15.572 4.936 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.094 3.906 3 H 0.137 0.863 4 O -0.363 6.363 5 C -0.133 4.133 6 C -0.129 4.129 7 C 0.028 3.972 8 F -0.125 7.125 9 C -0.130 4.130 10 C -0.201 4.201 11 C 0.099 3.901 12 O -0.222 6.222 13 C -0.011 4.011 14 C -0.011 4.011 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.526 5.526 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.216 0.784 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.160 0.840 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.062 -14.705 5.245 15.648 hybrid contribution -0.009 -0.315 -1.399 1.434 sum 1.053 -15.019 3.847 15.540 Atomic orbital electron populations 1.22428 0.95086 1.02264 1.03642 1.20664 0.93263 0.96333 0.80352 0.86277 1.86656 1.77302 1.28790 1.43595 1.19738 1.05037 0.93402 0.95151 1.20546 1.00802 0.93782 0.97783 1.17396 1.06046 0.78641 0.95159 1.91459 1.91063 1.32867 1.97120 1.20920 1.00734 0.94451 0.96905 1.21251 1.04754 0.94920 0.99176 1.18921 0.93342 0.84953 0.92928 1.86184 1.80251 1.18077 1.37657 1.23424 1.00042 0.96456 0.81193 1.19132 0.98089 0.85683 0.98239 1.20987 1.45366 0.95039 0.95218 0.92309 1.24983 0.94816 0.97335 0.96970 1.69978 1.43826 1.09115 1.29706 0.86435 0.77913 0.79549 0.83519 1.19640 1.20808 1.20802 0.91378 0.90587 0.92627 0.78362 0.84641 0.84734 0.83954 0.92881 0.92885 0.95320 0.95297 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 9.52 37.16 0.35 -1.74 16 2 C 0.15 2.04 3.55 -27.88 -0.10 1.94 16 3 H 0.12 1.81 7.69 -51.93 -0.40 1.41 16 4 O -0.56 -6.84 12.98 -35.23 -0.46 -7.29 16 5 C -0.13 -1.85 5.08 -104.49 -0.53 -2.38 16 6 C -0.11 -1.37 9.28 -39.53 -0.37 -1.73 16 7 C 0.05 0.61 7.30 -39.42 -0.29 0.32 16 8 F -0.15 -1.90 17.27 2.25 0.04 -1.86 16 9 C -0.11 -1.42 10.02 -39.53 -0.40 -1.82 16 10 C -0.18 -2.61 9.04 -39.44 -0.36 -2.97 16 11 C 0.15 2.32 6.66 -39.23 -0.26 2.06 16 12 O -0.31 -5.72 9.27 -19.56 -0.18 -5.90 16 13 C 0.06 1.24 4.68 37.16 0.17 1.41 16 14 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 15 C -0.53 -14.20 9.11 -34.44 -0.31 -14.51 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 19 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.37 3.04 7.33 45.56 0.33 3.37 16 27 H 0.14 1.29 6.40 -52.48 -0.34 0.96 16 28 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.14 1.94 6.30 -52.49 -0.33 1.61 16 30 H 0.05 1.00 7.66 -51.93 -0.40 0.60 16 31 H 0.05 0.99 7.66 -51.92 -0.40 0.59 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 296.55 15.07 4.47 4.47 Total: -1.00 -29.49 296.55 -6.35 -35.85 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.61 Total: 1.35 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -2.33 Total: -17.34 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.74 Total: -25.03 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.64 Total: -13.19 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.49 -6.35 -35.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087111718.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.133 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds