Wall clock time and date at job start Mon Mar 30 2020 06:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 O 1.42903 * 109.46459 * 119.99893 * 2 1 3 5 5 C 1.50696 * 109.47222 * 239.99559 * 2 1 3 6 6 C 1.38168 * 120.01874 * 264.72446 * 5 2 1 7 7 C 1.38436 * 120.03461 * 179.79525 * 6 5 2 8 8 F 1.35096 * 119.97185 * 180.23557 * 7 6 5 9 9 C 1.38479 * 120.05525 * 0.45864 * 7 6 5 10 10 C 1.38127 * 120.03057 * 359.79891 * 9 7 6 11 11 C 1.38682 * 120.01191 * 85.00478 * 5 2 1 12 12 O 1.35943 * 120.03426 * 359.95336 * 11 5 2 13 13 C 1.42898 * 117.00240 * 179.97438 * 12 11 5 14 14 C 1.52997 * 109.47039 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47361 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99608 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00625 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99785 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00553 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46737 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47296 * 119.99841 * 19 17 15 22 22 H 1.48506 * 109.47022 * 240.00260 * 19 17 15 23 23 H 1.08997 * 109.47258 * 300.00172 * 1 2 3 24 24 H 1.08997 * 109.46943 * 60.00345 * 1 2 3 25 25 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 26 26 H 0.96700 * 114.00311 * 60.00313 * 4 2 1 27 27 H 1.08004 * 119.98500 * 0.02562 * 6 5 2 28 28 H 1.07995 * 119.98385 * 179.77085 * 9 7 6 29 29 H 1.07998 * 120.01611 * 179.97438 * 10 9 7 30 30 H 1.08990 * 109.47530 * 300.00077 * 13 12 11 31 31 H 1.09010 * 109.46826 * 60.00445 * 13 12 11 32 32 H 1.09001 * 109.47319 * 300.00066 * 14 13 12 33 33 H 1.09001 * 109.47337 * 60.00325 * 14 13 12 34 34 H 0.96992 * 120.00221 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.0324 -0.7105 -1.2304 6 6 2.3665 -2.0497 -1.1672 7 6 2.8240 -2.7037 -2.2983 8 9 3.1458 -4.0143 -2.2363 9 6 2.9564 -2.0145 -3.4921 10 6 2.6281 -0.6744 -3.5568 11 6 2.1650 -0.0189 -2.4251 12 8 1.8412 1.2999 -2.4876 13 6 2.0032 1.9487 -3.7504 14 6 1.5914 3.4169 -3.6260 15 6 1.7616 4.1010 -4.9579 16 1 2.1274 3.5443 -5.8081 17 6 1.4514 5.4378 -5.0911 18 7 1.0064 6.1159 -4.0557 19 14 1.6631 6.2860 -6.7419 20 1 2.1751 5.3103 -7.7375 21 1 0.3533 6.8172 -7.1971 22 1 2.6299 7.4047 -6.6033 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.7209 -1.5952 1.2330 27 1 2.2672 -2.5874 -0.2359 28 1 3.3169 -2.5250 -4.3729 29 1 2.7319 -0.1371 -4.4878 30 1 3.0469 1.8886 -4.0586 31 1 1.3757 1.4575 -4.4943 32 1 0.5474 3.4767 -3.3181 33 1 2.2183 3.9084 -2.8820 34 1 0.7886 7.0564 -4.1492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087111718.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:10 Heat of formation + Delta-G solvation = -145.594389 kcal Electronic energy + Delta-G solvation = -18317.231058 eV Core-core repulsion = 15128.572583 eV Total energy + Delta-G solvation = -3188.658474 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.83353 -41.40710 -39.01806 -37.61339 -35.45337 -33.18692 -32.21560 -31.03784 -29.71723 -27.03688 -25.23191 -23.91023 -22.69224 -22.03930 -19.59421 -18.72522 -18.03018 -17.92753 -17.10725 -16.96644 -16.53394 -16.47269 -15.85705 -15.70776 -15.32474 -14.94322 -14.40971 -14.36443 -13.95017 -13.75544 -13.62623 -13.01740 -12.91987 -12.89694 -12.56048 -12.48963 -12.37086 -11.90911 -11.61071 -11.55391 -11.40104 -11.15314 -10.61517 -10.07953 -9.06786 -8.25993 -6.39005 0.06881 0.16940 1.42181 1.42392 1.55579 2.20680 2.46438 2.47202 3.09228 3.17778 3.40983 3.53673 3.72189 3.98493 4.10838 4.19391 4.24898 4.28762 4.35504 4.53888 4.66691 4.74431 4.84650 4.89098 5.07897 5.14814 5.22089 5.32081 5.36072 5.49335 5.64517 5.76504 6.07736 6.42164 6.76153 6.76898 7.31351 8.87065 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.027419 B = 0.004674 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.946820 B = 5989.431048 C = 6866.068296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.157 3.843 3 H 0.091 0.909 4 O -0.564 6.564 5 C -0.135 4.135 6 C -0.104 4.104 7 C 0.047 3.953 8 F -0.143 7.143 9 C -0.108 4.108 10 C -0.186 4.186 11 C 0.116 3.884 12 O -0.327 6.327 13 C 0.081 3.919 14 C 0.028 3.972 15 C -0.544 4.544 16 H 0.071 0.929 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.972 3.028 20 H -0.257 1.257 21 H -0.278 1.278 22 H -0.279 1.279 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.388 0.612 27 H 0.167 0.833 28 H 0.160 0.840 29 H 0.147 0.853 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.001 0.999 33 H -0.001 1.001 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 -17.489 4.085 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.098 3.902 3 H 0.109 0.891 4 O -0.373 6.373 5 C -0.136 4.136 6 C -0.122 4.122 7 C 0.028 3.972 8 F -0.122 7.122 9 C -0.127 4.127 10 C -0.205 4.205 11 C 0.069 3.931 12 O -0.241 6.241 13 C 0.007 3.993 14 C -0.009 4.009 15 C -0.582 4.582 16 H 0.089 0.911 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.796 3.204 20 H -0.181 1.181 21 H -0.204 1.204 22 H -0.205 1.205 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.239 0.761 27 H 0.184 0.816 28 H 0.178 0.822 29 H 0.165 0.835 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.530 -16.665 4.400 17.304 hybrid contribution -0.134 0.146 -1.028 1.047 sum 1.396 -16.520 3.372 16.918 Atomic orbital electron populations 1.22364 0.94038 1.03514 1.02899 1.20447 0.93968 0.95182 0.80651 0.89101 1.86625 1.77449 1.30379 1.42818 1.19863 1.05016 0.94059 0.94659 1.20824 0.99425 0.92995 0.98995 1.17539 1.05495 0.78746 0.95412 1.91475 1.90970 1.32635 1.97114 1.21163 0.99823 0.93777 0.97911 1.21342 1.04723 0.95652 0.98801 1.19221 0.95407 0.83893 0.94545 1.86113 1.81368 1.19993 1.36651 1.22949 1.00572 0.93581 0.82218 1.18955 0.95821 0.89203 0.96898 1.21433 1.44980 0.95638 0.96143 0.91079 1.25985 0.94337 0.98249 1.00954 1.70117 1.45032 1.09564 1.32234 0.85289 0.77933 0.78389 0.78769 1.18111 1.20362 1.20456 0.90812 0.92620 0.90344 0.76136 0.81564 0.82249 0.83525 0.91914 0.91652 0.98071 0.98306 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 9.52 71.98 0.69 -3.27 16 2 C 0.16 4.12 3.55 29.85 0.11 4.23 16 3 H 0.09 2.90 7.69 -2.39 -0.02 2.88 16 4 O -0.56 -12.88 12.98 -148.98 -1.93 -14.81 16 5 C -0.13 -3.64 5.08 -19.78 -0.10 -3.74 16 6 C -0.10 -2.30 9.28 22.30 0.21 -2.09 16 7 C 0.05 1.10 7.30 22.37 0.16 1.26 16 8 F -0.14 -3.26 17.27 44.97 0.78 -2.48 16 9 C -0.11 -2.50 10.02 22.30 0.22 -2.27 16 10 C -0.19 -5.09 9.04 22.36 0.20 -4.89 16 11 C 0.12 3.64 6.66 22.49 0.15 3.79 16 12 O -0.33 -12.49 9.27 -92.91 -0.86 -13.36 16 13 C 0.08 3.26 4.68 71.98 0.34 3.60 16 14 C 0.03 1.48 5.34 29.85 0.16 1.64 16 15 C -0.54 -29.62 9.11 25.60 0.23 -29.39 16 16 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 17 C 0.00 0.19 5.46 84.65 0.46 0.65 16 18 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 19 Si 0.97 42.54 29.54 68.60 2.03 44.57 16 20 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 23 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.39 5.24 7.33 -74.06 -0.54 4.70 16 27 H 0.17 2.54 6.40 -2.91 -0.02 2.52 16 28 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 29 H 0.15 3.80 6.30 -2.91 -0.02 3.78 16 30 H 0.06 2.37 7.66 -2.39 -0.02 2.35 16 31 H 0.07 2.44 7.66 -2.38 -0.02 2.42 16 32 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -64.21 296.55 3.69 -60.51 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.57 Total: 11.16 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 2.83 Total: -30.48 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.28 Total: -55.11 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -2.80 Total: -28.17 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -64.21 3.69 -60.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087111718.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.080 kcal (2) G-P(sol) polarization free energy of solvation -64.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds