Wall clock time and date at job start Mon Mar 30 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46869 * 2 1 4 4 N 1.46495 * 109.46787 * 119.99844 * 2 1 3 5 5 C 1.36934 * 120.00182 * 305.55245 * 4 2 1 6 6 H 1.08000 * 120.00222 * 321.35258 * 5 4 2 7 7 C 1.38816 * 119.99915 * 141.35640 * 5 4 2 8 8 N 1.31618 * 120.00235 * 340.50373 * 7 5 4 9 9 Si 1.86799 * 119.99939 * 160.50632 * 7 5 4 10 10 H 1.48501 * 109.47391 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47292 * 119.99861 * 9 7 5 12 12 H 1.48505 * 109.47202 * 239.99708 * 9 7 5 13 13 C 1.46500 * 119.99768 * 125.55440 * 4 2 1 14 14 C 1.50703 * 109.47189 * 95.49790 * 13 4 2 15 15 C 1.38653 * 120.79282 * 101.92417 * 14 13 4 16 16 C 1.38192 * 119.17418 * 180.02562 * 15 14 13 17 17 N 1.31876 * 120.79841 * 0.02562 * 16 15 14 18 18 C 1.31854 * 121.73512 * 359.97438 * 17 16 15 19 19 C 1.38347 * 120.74719 * 359.97438 * 18 17 16 20 20 Cl 1.73595 * 120.43657 * 179.97438 * 19 18 17 21 21 H 1.08997 * 109.47187 * 305.12545 * 1 2 3 22 22 H 1.09001 * 109.46593 * 65.12633 * 1 2 3 23 23 H 1.09004 * 109.46722 * 185.12076 * 1 2 3 24 24 H 1.08998 * 109.47115 * 239.99704 * 2 1 3 25 25 H 1.09002 * 109.46964 * 177.63436 * 3 2 1 26 26 H 1.09000 * 109.47489 * 297.63240 * 3 2 1 27 27 H 1.08997 * 109.47268 * 57.63466 * 3 2 1 28 28 H 0.96997 * 120.00395 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.47432 * 335.50005 * 13 4 2 30 30 H 1.09006 * 109.47080 * 215.49562 * 13 4 2 31 31 H 1.07998 * 120.41272 * 0.04734 * 15 14 13 32 32 H 1.08006 * 119.59643 * 179.72910 * 16 15 14 33 33 H 1.07996 * 119.62336 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5964 -0.2927 2.4366 6 1 1.4670 0.7577 2.6519 7 6 1.3351 -1.2395 3.4176 8 7 1.1151 -2.4926 3.0808 9 14 1.2956 -0.7349 5.2157 10 1 1.5730 0.7197 5.3280 11 1 -0.0449 -1.0288 5.7831 12 1 2.3280 -1.4945 5.9658 13 6 2.9580 -1.8068 1.0652 14 6 4.3670 -1.2999 1.2347 15 6 5.0480 -1.4818 2.4288 16 6 6.3388 -1.0028 2.5478 17 7 6.9229 -0.3790 1.5434 18 6 6.3069 -0.1876 0.3935 19 6 5.0139 -0.6400 0.1998 20 17 4.2102 -0.3831 -1.3173 21 1 -0.3633 0.5913 0.8405 22 1 -0.3632 0.4323 -0.9324 23 1 -0.3633 -1.0236 0.0917 24 1 1.8934 -0.5139 -0.8899 25 1 3.1292 1.4428 0.0424 26 1 1.7118 1.9440 -0.9104 27 1 1.6425 1.9684 0.8680 28 1 0.9321 -3.1542 3.7662 29 1 2.8506 -2.2584 0.0791 30 1 2.7455 -2.5525 1.8314 31 1 4.5756 -1.9917 3.2553 32 1 6.8740 -1.1369 3.4763 33 1 6.8175 0.3281 -0.4063 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088781587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:55 Heat of formation + Delta-G solvation = 43.273653 kcal Electronic energy + Delta-G solvation = -17374.400496 eV Core-core repulsion = 14654.561081 eV Total energy + Delta-G solvation = -2719.839415 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.68945 -36.68927 -36.00514 -32.98052 -32.12179 -30.52642 -29.35989 -26.18932 -26.10361 -23.60456 -22.94751 -21.26517 -19.62020 -16.76564 -16.19435 -15.84350 -15.39330 -14.95543 -14.43194 -13.77345 -13.55500 -13.44078 -12.92890 -12.68231 -11.98774 -11.87636 -11.45073 -11.40562 -11.22565 -11.18109 -10.81150 -10.80387 -10.47702 -10.30085 -10.03267 -9.96412 -9.53613 -9.09970 -8.85580 -8.60562 -8.43238 -6.65666 -5.87753 -3.47513 1.44344 1.74377 2.56892 3.27311 3.37744 3.41070 4.16122 4.41104 4.80321 5.19178 5.23249 5.40284 5.47136 5.56031 5.88754 5.99055 6.09810 6.23663 6.32995 6.40998 6.46626 6.57210 6.71856 6.79061 6.83824 6.92514 7.04703 7.22361 7.33522 7.49267 7.77336 8.26945 8.44233 9.08513 9.70513 10.29720 11.11117 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.011189 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.592068 B = 2501.847407 C = 3523.062249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.163 3.837 3 C -0.156 4.156 4 N -0.564 5.564 5 C -0.247 4.247 6 H 0.060 0.940 7 C 0.014 3.986 8 N -0.885 5.885 9 Si 0.891 3.109 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.287 1.287 13 C 0.167 3.833 14 C -0.019 4.019 15 C -0.145 4.145 16 C 0.087 3.913 17 N -0.491 5.491 18 C 0.097 3.903 19 C -0.086 4.086 20 Cl -0.064 7.064 21 H 0.053 0.947 22 H 0.030 0.970 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.034 0.966 27 H 0.048 0.952 28 H 0.255 0.745 29 H 0.046 0.954 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.152 0.848 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.796 1.820 -5.147 7.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.056 3.944 3 C -0.215 4.215 4 N -0.283 5.283 5 C -0.377 4.377 6 H 0.078 0.922 7 C -0.186 4.186 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.213 1.213 13 C 0.041 3.959 14 C -0.031 4.031 15 C -0.166 4.166 16 C -0.068 4.068 17 N -0.201 5.201 18 C -0.061 4.061 19 C -0.116 4.116 20 Cl -0.035 7.035 21 H 0.072 0.928 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.127 0.873 31 H 0.156 0.844 32 H 0.169 0.831 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.470 2.005 -5.081 8.467 hybrid contribution -0.934 0.066 0.901 1.299 sum 5.536 2.071 -4.180 7.239 Atomic orbital electron populations 1.22039 0.97640 1.01611 0.99068 1.20575 0.92322 0.91779 0.89697 1.22258 1.00908 0.98818 0.99536 1.43746 1.45576 1.37123 1.01853 1.18981 1.39443 0.91490 0.87817 0.92195 1.25176 0.98626 0.96021 0.98769 1.69931 1.48532 1.02045 1.32170 0.86410 0.77475 0.78464 0.85628 1.20083 1.21560 1.21301 1.20202 0.81200 0.92782 1.01752 1.21782 0.98507 0.92118 0.90700 1.22105 0.94878 1.01343 0.98238 1.22714 0.92974 0.94110 0.97045 1.67705 1.37060 1.15107 1.00214 1.22530 0.90581 0.97582 0.95376 1.21983 0.94908 1.05121 0.89569 1.98322 1.79545 1.95171 1.30462 0.92756 0.95125 0.92890 0.92726 0.93261 0.94662 0.93319 0.93455 0.93548 0.87277 0.84406 0.83093 0.83123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.98 37.16 0.33 -2.57 16 2 C 0.16 3.32 2.51 -67.93 -0.17 3.15 16 3 C -0.16 -2.96 8.63 37.16 0.32 -2.64 16 4 N -0.56 -13.01 2.35 -167.02 -0.39 -13.41 16 5 C -0.25 -6.28 8.12 -15.06 -0.12 -6.40 16 6 H 0.06 1.58 7.14 -52.49 -0.37 1.21 16 7 C 0.01 0.37 5.04 -17.43 -0.09 0.28 16 8 N -0.88 -23.52 11.36 55.49 0.63 -22.89 16 9 Si 0.89 20.53 29.60 -169.99 -5.03 15.50 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.17 3.67 5.04 -5.19 -0.03 3.64 16 14 C -0.02 -0.38 5.47 -104.28 -0.57 -0.95 16 15 C -0.14 -2.69 9.77 -39.45 -0.39 -3.08 16 16 C 0.09 1.46 11.18 -17.55 -0.20 1.26 16 17 N -0.49 -8.50 10.36 -13.22 -0.14 -8.64 16 18 C 0.10 1.62 10.99 -17.50 -0.19 1.42 16 19 C -0.09 -1.54 6.13 -39.36 -0.24 -1.78 16 20 Cl -0.06 -1.04 22.62 -51.86 -1.17 -2.22 16 21 H 0.05 1.14 7.73 -51.93 -0.40 0.74 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.05 1.07 5.61 -51.93 -0.29 0.78 16 25 H 0.05 0.95 6.42 -51.93 -0.33 0.62 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.98 7.31 -51.93 -0.38 0.60 16 28 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.05 0.98 7.18 -51.93 -0.37 0.61 16 30 H 0.11 2.67 5.38 -51.93 -0.28 2.39 16 31 H 0.14 2.59 8.06 -52.49 -0.42 2.16 16 32 H 0.15 2.04 8.06 -52.48 -0.42 1.62 16 33 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 283.14 15.07 4.27 4.27 Total: -1.00 -26.65 283.14 -7.28 -33.93 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.10 Total: 1.12 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -1.34 Total: -7.66 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.10 Total: -44.93 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.17 Total: -2.22 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.65 -7.28 -33.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088781587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.199 kcal (2) G-P(sol) polarization free energy of solvation -26.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds