Wall clock time and date at job start Mon Mar 30 2020 07:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36937 * 119.99944 * 2 1 4 4 H 1.07994 * 120.00045 * 203.06022 * 3 2 1 5 5 C 1.38813 * 119.99615 * 23.06056 * 3 2 1 6 6 N 1.31612 * 120.00403 * 13.01594 * 5 3 2 7 7 Si 1.86806 * 119.99764 * 193.01452 * 5 3 2 8 8 H 1.48499 * 109.46850 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47017 * 119.99931 * 7 5 3 10 10 H 1.48501 * 109.47227 * 240.00232 * 7 5 3 11 11 C 1.46497 * 120.00078 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47350 * 89.99808 * 11 2 1 13 13 N 1.29021 * 124.91629 * 90.28362 * 12 11 2 14 14 C 1.31783 * 117.12531 * 180.22544 * 13 12 11 15 15 C 1.50692 * 122.75043 * 179.74708 * 14 13 12 16 16 C 1.53005 * 109.47241 * 254.71055 * 15 14 13 17 17 C 1.53010 * 109.46952 * 134.71424 * 15 14 13 18 18 C 1.52997 * 109.47414 * 14.71366 * 15 14 13 19 19 C 1.33643 * 114.49756 * 359.48441 * 14 13 12 20 20 S 1.70976 * 124.91331 * 269.97344 * 12 11 2 21 21 H 1.08996 * 109.47170 * 275.12622 * 1 2 3 22 22 H 1.09001 * 109.47754 * 35.12665 * 1 2 3 23 23 H 1.09005 * 109.47187 * 155.12302 * 1 2 3 24 24 H 0.97003 * 120.00130 * 180.02562 * 6 5 3 25 25 H 1.09005 * 109.47003 * 329.99344 * 11 2 1 26 26 H 1.08996 * 109.46847 * 209.99919 * 11 2 1 27 27 H 1.09006 * 109.46827 * 300.00051 * 16 15 14 28 28 H 1.08989 * 109.47280 * 60.00072 * 16 15 14 29 29 H 1.09000 * 109.46904 * 180.02562 * 16 15 14 30 30 H 1.08998 * 109.46822 * 180.02562 * 17 15 14 31 31 H 1.09000 * 109.46540 * 299.99994 * 17 15 14 32 32 H 1.08999 * 109.46966 * 59.99737 * 17 15 14 33 33 H 1.09003 * 109.46819 * 299.99587 * 18 15 14 34 34 H 1.09000 * 109.47225 * 59.99304 * 18 15 14 35 35 H 1.08998 * 109.47565 * 180.02562 * 18 15 14 36 36 H 1.07997 * 126.03777 * 180.26701 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1649 1.2233 -0.3663 5 6 1.5387 2.3400 0.4709 6 7 0.4129 2.2594 1.1478 7 14 2.3145 4.0075 0.1438 8 1 3.5670 3.8269 -0.6333 9 1 1.3688 4.8500 -0.6313 10 1 2.6243 4.6713 1.4356 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7032 -1.4216 13 7 3.4904 -1.3914 -2.1159 14 6 3.5507 -1.8526 -3.3490 15 6 4.7055 -1.5620 -4.2725 16 6 4.2761 -0.5293 -5.3166 17 6 5.1327 -2.8516 -4.9764 18 6 5.8801 -1.0100 -3.4623 19 6 2.5065 -2.6038 -3.7113 20 16 1.3979 -2.6868 -2.3443 21 1 -0.3633 0.0918 1.0235 22 1 -0.3634 0.8405 -0.5913 23 1 -0.3634 -0.9323 -0.4323 24 1 -0.0142 3.0659 1.4765 25 1 1.6084 -2.0286 0.5131 26 1 3.1499 -1.1385 0.5133 27 1 3.4393 -0.9226 -5.8939 28 1 3.9718 0.3894 -4.8153 29 1 5.1113 -0.3194 -5.9849 30 1 5.9682 -2.6415 -5.6440 31 1 5.4385 -3.5873 -4.2325 32 1 4.2958 -3.2448 -5.5535 33 1 5.5758 -0.0912 -2.9609 34 1 6.1860 -1.7457 -2.7184 35 1 6.7152 -0.7994 -4.1303 36 1 2.3668 -3.0765 -4.6723 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094940916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:18 Heat of formation + Delta-G solvation = 53.942645 kcal Electronic energy + Delta-G solvation = -17023.525264 eV Core-core repulsion = 14442.025292 eV Total energy + Delta-G solvation = -2581.499972 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.75556 -36.31620 -35.18027 -31.60677 -29.54165 -27.66407 -27.17090 -26.30806 -25.84401 -23.72137 -21.64260 -19.82787 -18.60912 -16.95553 -16.53352 -15.38146 -15.07622 -14.41674 -14.01569 -13.83497 -13.66244 -13.44274 -12.85994 -12.77059 -12.15378 -11.99454 -11.91206 -11.60438 -11.52383 -11.26753 -10.90404 -10.80624 -10.75979 -10.64978 -10.49827 -10.43510 -9.97346 -9.91792 -9.02866 -8.81833 -8.58571 -8.19131 -6.86553 -5.76199 -3.23564 1.29757 1.96346 2.34540 3.35870 3.38787 3.45712 3.50173 4.47288 4.53528 4.94642 5.11830 5.17793 5.41553 5.47969 5.59313 5.63657 5.66530 5.74846 5.83763 5.92500 5.98729 6.08217 6.12595 6.18679 6.28202 6.43564 6.53176 6.60848 6.67107 6.77398 7.30474 7.66285 7.85966 8.33565 8.43485 9.18880 9.78661 10.25320 11.28944 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.007207 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.973800 B = 3884.130324 C = 4759.848634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.581 5.581 3 C -0.254 4.254 4 H 0.075 0.925 5 C 0.005 3.995 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.276 1.276 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.213 3.787 12 C 0.080 3.920 13 N -0.470 5.470 14 C 0.087 3.913 15 C 0.005 3.995 16 C -0.136 4.136 17 C -0.136 4.136 18 C -0.127 4.127 19 C -0.284 4.284 20 S 0.072 5.928 21 H 0.039 0.961 22 H 0.043 0.957 23 H 0.000 1.000 24 H 0.253 0.747 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.257 -10.383 -10.081 15.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.301 5.301 3 C -0.384 4.384 4 H 0.093 0.907 5 C -0.193 4.193 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.201 1.201 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.081 3.919 12 C -0.203 4.203 13 N -0.184 5.184 14 C -0.046 4.046 15 C 0.002 3.998 16 C -0.194 4.194 17 C -0.193 4.193 18 C -0.185 4.185 19 C -0.423 4.423 20 S 0.326 5.674 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.018 0.982 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.534 -10.370 -9.509 14.782 hybrid contribution 0.809 1.183 -0.942 1.715 sum 5.343 -9.187 -10.451 14.906 Atomic orbital electron populations 1.20925 0.82137 0.95719 0.99955 1.43955 1.01950 1.00180 1.84038 1.19320 0.98491 0.85099 1.35453 0.90746 1.25009 0.97761 0.98565 0.98010 1.70077 1.19494 1.27246 1.38326 0.86168 0.78711 0.84051 0.77577 1.20130 1.21635 1.21590 1.19509 0.98270 0.89186 0.84965 1.29584 0.90960 0.95603 1.04109 1.66106 1.24052 1.22900 1.05296 1.20137 0.96277 0.96643 0.91588 1.19113 0.91925 0.95760 0.92972 1.21864 1.00925 0.98886 0.97716 1.21894 1.01006 0.96429 1.00010 1.21682 0.95640 1.02152 0.99033 1.26464 0.99472 1.12171 1.04182 1.83873 1.27596 1.49158 1.06724 0.94245 0.93866 0.98183 0.93716 0.91992 0.89954 0.92774 0.92101 0.92286 0.92229 0.92544 0.92661 0.91399 0.92654 0.93291 0.81953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.84 8.98 59.85 0.54 4.38 16 2 N -0.58 -14.63 2.91 -182.50 -0.53 -15.16 16 3 C -0.25 -7.08 9.65 -15.06 -0.15 -7.23 16 4 H 0.07 2.11 7.86 -52.49 -0.41 1.70 16 5 C 0.00 0.14 5.10 -17.43 -0.09 0.05 16 6 N -0.91 -26.38 10.71 55.49 0.59 -25.78 16 7 Si 0.91 22.30 29.57 -169.99 -5.03 17.27 16 8 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 C 0.21 4.47 6.22 -5.20 -0.03 4.44 16 12 C 0.08 1.58 6.97 -13.46 -0.09 1.49 16 13 N -0.47 -9.37 9.55 -8.06 -0.08 -9.45 16 14 C 0.09 1.47 5.41 -84.23 -0.46 1.01 16 15 C 0.01 0.07 0.90 -155.66 -0.14 -0.07 16 16 C -0.14 -1.77 8.43 37.16 0.31 -1.45 16 17 C -0.14 -1.49 8.13 37.16 0.30 -1.19 16 18 C -0.13 -1.81 7.91 37.16 0.29 -1.51 16 19 C -0.28 -4.41 10.40 29.12 0.30 -4.10 16 20 S 0.07 1.19 23.18 -107.50 -2.49 -1.30 16 21 H 0.04 1.02 7.34 -51.93 -0.38 0.64 16 22 H 0.04 1.15 7.35 -51.93 -0.38 0.77 16 23 H 0.00 -0.01 8.03 -51.93 -0.42 -0.43 16 24 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 26 H 0.08 1.74 8.04 -51.93 -0.42 1.32 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.92 8.14 -51.94 -0.42 0.49 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.56 7.15 -51.93 -0.37 0.19 16 33 H 0.07 1.13 7.98 -51.93 -0.41 0.71 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.16 2.06 7.31 -52.49 -0.38 1.68 16 LS Contribution 309.78 15.07 4.67 4.67 Total: -1.00 -30.07 309.78 -7.76 -37.83 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -5.69 Total: -3.89 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 0.79 Total: -4.20 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.01 Total: -50.38 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.49 Total: -1.30 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.07 -7.76 -37.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094940916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.776 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds