Wall clock time and date at job start Mon Mar 30 2020 07:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36937 * 119.99944 * 2 1 4 4 H 1.07994 * 120.00045 * 203.06022 * 3 2 1 5 5 C 1.38813 * 119.99615 * 23.06056 * 3 2 1 6 6 N 1.31612 * 120.00403 * 13.01594 * 5 3 2 7 7 Si 1.86806 * 119.99764 * 193.01452 * 5 3 2 8 8 H 1.48499 * 109.46850 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47017 * 119.99931 * 7 5 3 10 10 H 1.48501 * 109.47227 * 240.00232 * 7 5 3 11 11 C 1.46497 * 120.00078 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47350 * 89.99808 * 11 2 1 13 13 N 1.29021 * 124.91629 * 90.28362 * 12 11 2 14 14 C 1.31783 * 117.12531 * 180.22544 * 13 12 11 15 15 C 1.50692 * 122.75043 * 179.74708 * 14 13 12 16 16 C 1.53005 * 109.47241 * 254.71055 * 15 14 13 17 17 C 1.53010 * 109.46952 * 134.71424 * 15 14 13 18 18 C 1.52997 * 109.47414 * 14.71366 * 15 14 13 19 19 C 1.33643 * 114.49756 * 359.48441 * 14 13 12 20 20 S 1.70976 * 124.91331 * 269.97344 * 12 11 2 21 21 H 1.08996 * 109.47170 * 275.12622 * 1 2 3 22 22 H 1.09001 * 109.47754 * 35.12665 * 1 2 3 23 23 H 1.09005 * 109.47187 * 155.12302 * 1 2 3 24 24 H 0.97003 * 120.00130 * 180.02562 * 6 5 3 25 25 H 1.09005 * 109.47003 * 329.99344 * 11 2 1 26 26 H 1.08996 * 109.46847 * 209.99919 * 11 2 1 27 27 H 1.09006 * 109.46827 * 300.00051 * 16 15 14 28 28 H 1.08989 * 109.47280 * 60.00072 * 16 15 14 29 29 H 1.09000 * 109.46904 * 180.02562 * 16 15 14 30 30 H 1.08998 * 109.46822 * 180.02562 * 17 15 14 31 31 H 1.09000 * 109.46540 * 299.99994 * 17 15 14 32 32 H 1.08999 * 109.46966 * 59.99737 * 17 15 14 33 33 H 1.09003 * 109.46819 * 299.99587 * 18 15 14 34 34 H 1.09000 * 109.47225 * 59.99304 * 18 15 14 35 35 H 1.08998 * 109.47565 * 180.02562 * 18 15 14 36 36 H 1.07997 * 126.03777 * 180.26701 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1649 1.2233 -0.3663 5 6 1.5387 2.3400 0.4709 6 7 0.4129 2.2594 1.1478 7 14 2.3145 4.0075 0.1438 8 1 3.5670 3.8269 -0.6333 9 1 1.3688 4.8500 -0.6313 10 1 2.6243 4.6713 1.4356 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7032 -1.4216 13 7 3.4904 -1.3914 -2.1159 14 6 3.5507 -1.8526 -3.3490 15 6 4.7055 -1.5620 -4.2725 16 6 4.2761 -0.5293 -5.3166 17 6 5.1327 -2.8516 -4.9764 18 6 5.8801 -1.0100 -3.4623 19 6 2.5065 -2.6038 -3.7113 20 16 1.3979 -2.6868 -2.3443 21 1 -0.3633 0.0918 1.0235 22 1 -0.3634 0.8405 -0.5913 23 1 -0.3634 -0.9323 -0.4323 24 1 -0.0142 3.0659 1.4765 25 1 1.6084 -2.0286 0.5131 26 1 3.1499 -1.1385 0.5133 27 1 3.4393 -0.9226 -5.8939 28 1 3.9718 0.3894 -4.8153 29 1 5.1113 -0.3194 -5.9849 30 1 5.9682 -2.6415 -5.6440 31 1 5.4385 -3.5873 -4.2325 32 1 4.2958 -3.2448 -5.5535 33 1 5.5758 -0.0912 -2.9609 34 1 6.1860 -1.7457 -2.7184 35 1 6.7152 -0.7994 -4.1303 36 1 2.3668 -3.0765 -4.6723 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094940916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:18 Heat of formation + Delta-G solvation = 36.648063 kcal Electronic energy + Delta-G solvation = -17024.275213 eV Core-core repulsion = 14442.025292 eV Total energy + Delta-G solvation = -2582.249921 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.06932 -37.86613 -36.71112 -33.56885 -31.06209 -29.03133 -28.13259 -27.97260 -27.53927 -25.20026 -23.38693 -21.26685 -19.94264 -18.73435 -18.07611 -17.03988 -16.61478 -15.85873 -15.48479 -15.44602 -15.14575 -14.75424 -14.37872 -14.25989 -13.56132 -13.19849 -13.12798 -13.06311 -12.88987 -12.81582 -12.61315 -12.54406 -12.35375 -12.05742 -11.95154 -11.84565 -11.75797 -11.61556 -10.76714 -10.37729 -10.18624 -9.53308 -8.89226 -7.88613 -5.38415 -0.07860 0.62523 0.97240 1.40949 1.42607 1.53758 1.99586 2.48062 3.18887 3.33179 3.71511 3.88901 4.01951 4.10092 4.37981 4.43809 4.46089 4.65194 4.75653 4.77807 4.83996 4.87569 4.89673 4.99959 5.02135 5.11134 5.20196 5.26250 5.42600 5.45766 5.52962 5.61553 5.67180 6.27019 7.05081 7.11237 7.76044 8.18517 9.14513 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.007207 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.973800 B = 3884.130324 C = 4759.848634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.599 5.599 3 C -0.257 4.257 4 H 0.061 0.939 5 C -0.045 4.045 6 N -0.933 5.933 7 Si 0.963 3.037 8 H -0.275 1.275 9 H -0.289 1.289 10 H -0.285 1.285 11 C 0.216 3.784 12 C 0.041 3.959 13 N -0.495 5.495 14 C 0.063 3.937 15 C 0.002 3.998 16 C -0.132 4.132 17 C -0.129 4.129 18 C -0.123 4.123 19 C -0.268 4.268 20 S 0.115 5.885 21 H 0.018 0.982 22 H 0.013 0.987 23 H 0.033 0.967 24 H 0.250 0.750 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.029 0.971 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.785 -11.813 -12.396 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.321 5.321 3 C -0.388 4.388 4 H 0.079 0.921 5 C -0.240 4.240 6 N -0.579 5.579 7 Si 0.792 3.208 8 H -0.200 1.200 9 H -0.216 1.216 10 H -0.212 1.212 11 C 0.085 3.915 12 C -0.240 4.240 13 N -0.210 5.210 14 C -0.070 4.070 15 C -0.001 4.001 16 C -0.190 4.190 17 C -0.186 4.186 18 C -0.181 4.181 19 C -0.407 4.407 20 S 0.370 5.630 21 H 0.036 0.964 22 H 0.032 0.968 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.082 -11.835 -11.832 17.490 hybrid contribution 0.684 1.484 -0.301 1.661 sum 5.766 -10.351 -12.133 16.959 Atomic orbital electron populations 1.20635 0.82011 0.96046 0.98323 1.44063 1.02234 1.00911 1.84917 1.19389 0.98151 0.86599 1.34622 0.92144 1.25679 0.98531 1.01457 0.98366 1.70202 1.20584 1.27681 1.39463 0.85265 0.77845 0.80363 0.77359 1.19974 1.21558 1.21174 1.19503 0.97566 0.88105 0.86299 1.28824 0.92780 0.98410 1.04026 1.66101 1.24767 1.23237 1.06861 1.20643 0.98019 0.97156 0.91150 1.19293 0.90556 0.97582 0.92667 1.21847 1.02352 0.97204 0.97607 1.21853 1.02338 0.94435 1.00012 1.21630 0.96913 1.00220 0.99300 1.26937 0.98137 1.10648 1.04939 1.83585 1.26086 1.47192 1.06159 0.96392 0.96790 0.94897 0.94018 0.89676 0.91343 0.91668 0.95216 0.89746 0.90076 0.93024 0.91219 0.94824 0.93588 0.90618 0.78421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.64 8.98 127.77 1.15 9.78 16 2 N -0.60 -30.71 2.91 -731.32 -2.12 -32.83 16 3 C -0.26 -14.72 9.65 84.03 0.81 -13.91 16 4 H 0.06 3.55 7.86 -2.91 -0.02 3.53 16 5 C -0.04 -2.58 5.10 84.86 0.43 -2.15 16 6 N -0.93 -55.51 10.71 21.65 0.23 -55.28 16 7 Si 0.96 46.78 29.57 68.60 2.03 48.81 16 8 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 9 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 11 C 0.22 9.13 6.22 85.63 0.53 9.66 16 12 C 0.04 1.59 6.97 88.52 0.62 2.21 16 13 N -0.49 -19.69 9.55 -179.41 -1.71 -21.40 16 14 C 0.06 2.02 5.41 41.52 0.22 2.24 16 15 C 0.00 0.05 0.90 -52.93 -0.05 0.00 16 16 C -0.13 -3.13 8.43 71.98 0.61 -2.52 16 17 C -0.13 -2.35 8.13 71.99 0.59 -1.76 16 18 C -0.12 -3.39 7.91 71.98 0.57 -2.82 16 19 C -0.27 -7.47 10.40 66.78 0.69 -6.78 16 20 S 0.12 3.56 23.18 -56.49 -1.31 2.25 16 21 H 0.02 0.95 7.34 -2.39 -0.02 0.93 16 22 H 0.01 0.73 7.35 -2.39 -0.02 0.72 16 23 H 0.03 1.37 8.03 -2.38 -0.02 1.35 16 24 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 25 H 0.09 3.11 8.07 -2.38 -0.02 3.09 16 26 H 0.07 3.00 8.04 -2.39 -0.02 2.98 16 27 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.07 7.15 -2.39 -0.02 1.06 16 33 H 0.03 1.13 7.98 -2.39 -0.02 1.11 16 34 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.20 4.03 7.31 -2.91 -0.02 4.01 16 Total: -1.00 -66.15 309.78 4.33 -61.83 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: 1.04 Total: 2.67 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 6.17 Total: -6.03 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -3.61 Total: -109.52 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.31 Total: 2.25 kcal Total: -66.15 4.33 -61.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094940916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.473 kcal (2) G-P(sol) polarization free energy of solvation -66.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds