Wall clock time and date at job start Mon Mar 30 2020 07:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47100 * 2 1 4 4 C 1.33636 * 126.04029 * 90.04503 * 3 2 1 5 5 N 1.31783 * 114.50108 * 179.71759 * 4 3 2 6 6 C 1.29023 * 117.12308 * 0.47507 * 5 4 3 7 7 C 1.50704 * 124.91515 * 179.81611 * 6 5 4 8 8 H 1.09000 * 109.47067 * 164.69110 * 7 6 5 9 9 C 1.53002 * 109.46851 * 284.69104 * 7 6 5 10 10 N 1.46902 * 109.47116 * 44.68864 * 7 6 5 11 11 C 1.46907 * 110.99466 * 85.12092 * 10 7 6 12 12 H 1.08992 * 109.47600 * 326.39200 * 11 10 7 13 13 C 1.52997 * 109.46705 * 86.39764 * 11 10 7 14 14 C 1.50704 * 109.47002 * 206.39265 * 11 10 7 15 15 H 1.08006 * 119.99802 * 359.97438 * 14 11 10 16 16 C 1.37866 * 120.00210 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99976 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 120.00346 * 179.97438 * 16 14 11 19 19 H 1.48508 * 109.46713 * 89.99881 * 18 16 14 20 20 H 1.48494 * 109.47321 * 209.99917 * 18 16 14 21 21 H 1.48493 * 109.46842 * 330.00349 * 18 16 14 22 22 S 1.70979 * 110.16809 * 359.54439 * 6 5 4 23 23 H 1.09003 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46589 * 299.99773 * 1 2 3 25 25 H 1.08995 * 109.47271 * 60.00077 * 1 2 3 26 26 H 1.09005 * 109.46536 * 239.99685 * 2 1 3 27 27 H 1.09002 * 109.47130 * 120.00306 * 2 1 3 28 28 H 1.08008 * 122.74690 * 359.95984 * 4 3 2 29 29 H 1.08998 * 109.47234 * 295.44886 * 9 7 6 30 30 H 1.09003 * 109.47064 * 55.45060 * 9 7 6 31 31 H 1.09001 * 109.46844 * 175.44514 * 9 7 6 32 32 H 1.00899 * 110.99792 * 209.07503 * 10 7 6 33 33 H 1.09001 * 109.46973 * 185.84920 * 13 11 10 34 34 H 1.09000 * 109.47475 * 305.84807 * 13 11 10 35 35 H 1.09003 * 109.47589 * 65.84723 * 13 11 10 36 36 H 0.97001 * 119.99936 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2953 2.1618 1.0806 5 7 2.7310 3.3772 0.8170 6 6 2.8414 3.7059 -0.4258 7 6 3.3164 5.0463 -0.9247 8 1 3.5718 4.9709 -1.9816 9 6 2.2051 6.0818 -0.7411 10 7 4.5021 5.4602 -0.1626 11 6 5.7252 4.8859 -0.7391 12 1 5.5051 3.9010 -1.1509 13 6 6.2426 5.7999 -1.8516 14 6 6.7748 4.7581 0.3348 15 1 6.5553 5.0726 1.3445 16 6 8.0154 4.2408 0.0283 17 7 8.2828 3.8583 -1.2013 18 14 9.3166 4.0831 1.3593 19 1 9.1987 2.7542 2.0117 20 1 10.6649 4.2186 0.7520 21 1 9.1203 5.1510 2.3722 22 16 2.3779 2.3981 -1.4248 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.1651 1.7933 2.0875 29 1 1.3547 5.8174 -1.3695 30 1 1.8936 6.0992 0.3034 31 1 2.5754 7.0665 -1.0262 32 1 4.5650 6.4659 -0.1097 33 1 7.0884 5.3246 -2.3484 34 1 5.4477 5.9761 -2.5763 35 1 6.5603 6.7503 -1.4227 36 1 9.1556 3.4940 -1.4169 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125165532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:28 Heat of formation + Delta-G solvation = 31.994492 kcal Electronic energy + Delta-G solvation = -16744.856173 eV Core-core repulsion = 14162.404458 eV Total energy + Delta-G solvation = -2582.451715 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.34111 -36.60431 -34.20585 -33.03425 -30.71322 -28.28812 -26.84192 -25.33605 -25.06880 -22.87150 -21.63552 -20.33243 -18.29459 -17.71248 -16.24525 -15.21503 -14.90364 -14.69461 -14.21970 -13.98685 -13.67720 -13.66387 -13.26866 -12.42664 -12.19378 -12.11560 -11.85769 -11.56985 -11.45970 -11.36524 -11.27972 -10.87637 -10.73613 -10.67649 -10.49114 -10.09709 -9.81790 -9.06680 -8.91693 -8.78750 -8.35588 -8.30459 -7.27138 -5.94298 -3.95782 1.14386 1.74124 2.17110 3.36093 3.36664 3.41977 3.47034 4.48185 4.63048 4.91235 5.01159 5.15004 5.23755 5.38004 5.39459 5.54125 5.59327 5.68157 5.73961 5.78532 6.02277 6.06901 6.11301 6.15564 6.40607 6.63631 6.66925 6.82866 7.07472 7.34499 7.73355 7.92450 8.25366 8.36374 8.54902 8.63128 9.11279 9.68817 11.13500 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.021830 B = 0.006399 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.346729 B = 4374.957430 C = 5026.170424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C -0.235 4.235 4 C 0.039 3.961 5 N -0.442 5.442 6 C 0.092 3.908 7 C 0.157 3.843 8 H 0.054 0.946 9 C -0.143 4.143 10 N -0.662 5.662 11 C 0.212 3.788 12 H 0.029 0.971 13 C -0.167 4.167 14 C -0.488 4.488 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.900 5.900 18 Si 0.897 3.103 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.274 1.274 22 S 0.082 5.918 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.167 0.833 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.334 0.666 33 H 0.086 0.914 34 H 0.004 0.996 35 H 0.032 0.968 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.572 -3.536 -1.250 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 C -0.356 4.356 4 C -0.112 4.112 5 N -0.154 5.154 6 C -0.188 4.188 7 C 0.042 3.958 8 H 0.072 0.928 9 C -0.202 4.202 10 N -0.295 5.295 11 C 0.105 3.895 12 H 0.047 0.953 13 C -0.227 4.227 14 C -0.527 4.527 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.540 5.540 18 Si 0.725 3.275 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.199 1.199 22 S 0.338 5.662 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.184 0.816 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.153 0.847 33 H 0.105 0.895 34 H 0.023 0.977 35 H 0.051 0.949 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.378 -3.850 -1.549 14.965 hybrid contribution 0.974 -0.034 0.707 1.204 sum -13.404 -3.884 -0.842 13.981 Atomic orbital electron populations 1.21791 0.94668 1.01602 1.02316 1.19906 0.95704 0.89390 1.03131 1.25798 1.12589 1.02143 0.95102 1.21743 1.00526 0.89342 0.99621 1.66157 1.13926 1.16649 1.18652 1.27204 1.00855 1.00080 0.90678 1.19944 0.92963 0.87735 0.95146 0.92778 1.21926 0.97464 0.97817 1.03039 1.60560 1.01516 1.14053 1.53329 1.19225 0.85372 0.92955 0.91972 0.95267 1.22440 1.01017 1.00035 0.99173 1.21122 0.95870 1.40155 0.95580 0.91879 1.24934 0.98403 0.95758 0.95472 1.69897 1.22397 1.43646 1.18025 0.86516 0.80675 0.78430 0.81875 1.20899 1.21455 1.19895 1.83792 1.61636 1.08143 1.12641 0.92276 0.92396 0.92635 0.90938 0.90064 0.81626 0.92635 0.91198 0.91804 0.84736 0.89529 0.97720 0.94866 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.90 37.16 0.37 -0.99 16 2 C -0.04 -0.46 6.47 -27.88 -0.18 -0.64 16 3 C -0.24 -3.53 5.85 -35.92 -0.21 -3.74 16 4 C 0.04 0.66 11.25 -19.19 -0.22 0.44 16 5 N -0.44 -8.77 10.50 -11.86 -0.12 -8.90 16 6 C 0.09 1.74 5.92 -13.46 -0.08 1.66 16 7 C 0.16 2.88 2.92 -68.86 -0.20 2.68 16 8 H 0.05 1.00 7.20 -51.93 -0.37 0.63 16 9 C -0.14 -2.07 9.21 37.16 0.34 -1.73 16 10 N -0.66 -14.35 6.00 -102.16 -0.61 -14.97 16 11 C 0.21 5.41 2.37 -68.86 -0.16 5.25 16 12 H 0.03 0.84 7.63 -51.93 -0.40 0.44 16 13 C -0.17 -4.00 8.84 37.16 0.33 -3.67 16 14 C -0.49 -13.89 8.84 -34.44 -0.30 -14.20 16 15 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 16 C 0.05 1.55 5.30 -17.82 -0.09 1.45 16 17 N -0.90 -26.21 11.39 55.43 0.63 -25.58 16 18 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 S 0.08 1.33 23.18 -107.50 -2.49 -1.16 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.17 2.35 8.06 -52.48 -0.42 1.93 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.82 8.03 -51.93 -0.42 0.40 16 32 H 0.33 6.68 8.01 -39.29 -0.31 6.36 16 33 H 0.09 2.30 6.25 -51.93 -0.32 1.98 16 34 H 0.00 0.08 7.48 -51.93 -0.39 -0.31 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 312.71 15.07 4.71 4.71 Total: -1.00 -30.90 312.71 -8.88 -39.78 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.56 Total: 2.46 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -0.41 Total: -13.49 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -0.11 Total: -49.44 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.49 Total: -1.16 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.90 -8.88 -39.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125165532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.775 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds