Wall clock time and date at job start Mon Mar 30 2020 07:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47100 * 2 1 4 4 C 1.33636 * 126.04029 * 90.04503 * 3 2 1 5 5 N 1.31783 * 114.50108 * 179.71759 * 4 3 2 6 6 C 1.29023 * 117.12308 * 0.47507 * 5 4 3 7 7 C 1.50704 * 124.91515 * 179.81611 * 6 5 4 8 8 H 1.09000 * 109.47067 * 164.69110 * 7 6 5 9 9 C 1.53002 * 109.46851 * 284.69104 * 7 6 5 10 10 N 1.46902 * 109.47116 * 44.68864 * 7 6 5 11 11 C 1.46907 * 110.99466 * 85.12092 * 10 7 6 12 12 H 1.08992 * 109.47600 * 326.39200 * 11 10 7 13 13 C 1.52997 * 109.46705 * 86.39764 * 11 10 7 14 14 C 1.50704 * 109.47002 * 206.39265 * 11 10 7 15 15 H 1.08006 * 119.99802 * 359.97438 * 14 11 10 16 16 C 1.37866 * 120.00210 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99976 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 120.00346 * 179.97438 * 16 14 11 19 19 H 1.48508 * 109.46713 * 89.99881 * 18 16 14 20 20 H 1.48494 * 109.47321 * 209.99917 * 18 16 14 21 21 H 1.48493 * 109.46842 * 330.00349 * 18 16 14 22 22 S 1.70979 * 110.16809 * 359.54439 * 6 5 4 23 23 H 1.09003 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46589 * 299.99773 * 1 2 3 25 25 H 1.08995 * 109.47271 * 60.00077 * 1 2 3 26 26 H 1.09005 * 109.46536 * 239.99685 * 2 1 3 27 27 H 1.09002 * 109.47130 * 120.00306 * 2 1 3 28 28 H 1.08008 * 122.74690 * 359.95984 * 4 3 2 29 29 H 1.08998 * 109.47234 * 295.44886 * 9 7 6 30 30 H 1.09003 * 109.47064 * 55.45060 * 9 7 6 31 31 H 1.09001 * 109.46844 * 175.44514 * 9 7 6 32 32 H 1.00899 * 110.99792 * 209.07503 * 10 7 6 33 33 H 1.09001 * 109.46973 * 185.84920 * 13 11 10 34 34 H 1.09000 * 109.47475 * 305.84807 * 13 11 10 35 35 H 1.09003 * 109.47589 * 65.84723 * 13 11 10 36 36 H 0.97001 * 119.99936 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2953 2.1618 1.0806 5 7 2.7310 3.3772 0.8170 6 6 2.8414 3.7059 -0.4258 7 6 3.3164 5.0463 -0.9247 8 1 3.5718 4.9709 -1.9816 9 6 2.2051 6.0818 -0.7411 10 7 4.5021 5.4602 -0.1626 11 6 5.7252 4.8859 -0.7391 12 1 5.5051 3.9010 -1.1509 13 6 6.2426 5.7999 -1.8516 14 6 6.7748 4.7581 0.3348 15 1 6.5553 5.0726 1.3445 16 6 8.0154 4.2408 0.0283 17 7 8.2828 3.8583 -1.2013 18 14 9.3166 4.0831 1.3593 19 1 9.1987 2.7542 2.0117 20 1 10.6649 4.2186 0.7520 21 1 9.1203 5.1510 2.3722 22 16 2.3779 2.3981 -1.4248 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.1651 1.7933 2.0875 29 1 1.3547 5.8174 -1.3695 30 1 1.8936 6.0992 0.3034 31 1 2.5754 7.0665 -1.0262 32 1 4.5650 6.4659 -0.1097 33 1 7.0884 5.3246 -2.3484 34 1 5.4477 5.9761 -2.5763 35 1 6.5603 6.7503 -1.4227 36 1 9.1556 3.4940 -1.4169 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125165532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:27 Heat of formation + Delta-G solvation = 11.991443 kcal Electronic energy + Delta-G solvation = -16745.723571 eV Core-core repulsion = 14162.404458 eV Total energy + Delta-G solvation = -2583.319113 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.67377 -38.24450 -35.53038 -34.66497 -32.50294 -29.47468 -28.52342 -27.20886 -26.55507 -23.95379 -22.93927 -22.25032 -19.64388 -19.03043 -18.31717 -16.79803 -16.47580 -16.28839 -15.51446 -15.28574 -15.14555 -14.81495 -14.61842 -14.16022 -13.80801 -13.31191 -13.18362 -13.06142 -12.90914 -12.84749 -12.58943 -12.41239 -12.33905 -12.29661 -12.11025 -11.78770 -11.71622 -11.05432 -10.50440 -10.35195 -10.09138 -9.60309 -9.00419 -8.10564 -6.19878 -0.15141 0.47738 0.86625 1.39641 1.40255 1.51497 2.03194 2.42774 3.18049 3.35708 3.60788 3.91665 4.07268 4.15293 4.23625 4.37715 4.41900 4.63584 4.72326 4.78629 4.84673 4.88115 4.92210 5.03617 5.06223 5.15444 5.23694 5.32101 5.38813 5.42515 5.69805 5.81493 6.26171 6.62770 6.81237 6.94886 7.04182 7.49324 8.95358 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.021830 B = 0.006399 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.346729 B = 4374.957430 C = 5026.170424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 C -0.217 4.217 4 C 0.011 3.989 5 N -0.474 5.474 6 C 0.058 3.942 7 C 0.154 3.846 8 H 0.051 0.949 9 C -0.133 4.133 10 N -0.671 5.671 11 C 0.223 3.777 12 H -0.007 1.007 13 C -0.153 4.153 14 C -0.509 4.509 15 H 0.048 0.952 16 C 0.010 3.990 17 N -0.922 5.922 18 Si 0.956 3.044 19 H -0.282 1.282 20 H -0.280 1.280 21 H -0.269 1.269 22 S 0.099 5.901 23 H 0.082 0.918 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.186 0.814 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.341 0.659 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.035 0.965 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.521 -4.091 -1.103 16.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 C -0.339 4.339 4 C -0.140 4.140 5 N -0.187 5.187 6 C -0.221 4.221 7 C 0.040 3.960 8 H 0.069 0.931 9 C -0.192 4.192 10 N -0.303 5.303 11 C 0.114 3.886 12 H 0.011 0.989 13 C -0.213 4.213 14 C -0.548 4.548 15 H 0.067 0.933 16 C -0.188 4.188 17 N -0.562 5.562 18 Si 0.783 3.217 19 H -0.209 1.209 20 H -0.205 1.205 21 H -0.194 1.194 22 S 0.354 5.646 23 H 0.101 0.899 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.203 0.797 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.161 0.839 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.344 -4.390 -1.402 16.021 hybrid contribution 1.201 0.051 0.643 1.364 sum -14.143 -4.340 -0.758 14.813 Atomic orbital electron populations 1.21758 0.92882 1.03102 1.02102 1.20125 0.97123 0.86898 1.04230 1.26333 1.10229 1.03360 0.93942 1.22082 1.01758 0.89019 1.01112 1.66121 1.14637 1.18396 1.19557 1.27261 1.02509 1.01133 0.91238 1.20069 0.92629 0.88956 0.94353 0.93076 1.21861 0.96849 0.97483 1.02965 1.60378 1.01315 1.14484 1.54140 1.18895 0.86392 0.91752 0.91531 0.98943 1.22226 1.00694 0.99345 0.99029 1.21394 0.97175 1.40555 0.95693 0.93337 1.25661 1.00279 0.95405 0.97478 1.70015 1.22852 1.43925 1.19440 0.85581 0.78446 0.78263 0.79459 1.20864 1.20507 1.19395 1.83633 1.61000 1.07305 1.12661 0.89938 0.92455 0.93042 0.90205 0.88539 0.79737 0.90438 0.92139 0.90055 0.83882 0.92332 0.95012 0.94557 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.90 71.98 0.71 -1.53 16 2 C -0.04 -0.88 6.47 29.85 0.19 -0.69 16 3 C -0.22 -6.26 5.85 24.64 0.14 -6.12 16 4 C 0.01 0.35 11.25 83.66 0.94 1.29 16 5 N -0.47 -18.93 10.50 -191.44 -2.01 -20.94 16 6 C 0.06 2.19 5.92 88.52 0.52 2.72 16 7 C 0.15 5.62 2.92 44.17 0.13 5.75 16 8 H 0.05 1.88 7.20 -2.39 -0.02 1.86 16 9 C -0.13 -3.66 9.21 71.98 0.66 -3.00 16 10 N -0.67 -29.26 6.00 -477.14 -2.86 -32.12 16 11 C 0.22 11.55 2.37 44.17 0.10 11.66 16 12 H -0.01 -0.43 7.63 -2.39 -0.02 -0.45 16 13 C -0.15 -7.36 8.84 71.98 0.64 -6.72 16 14 C -0.51 -29.45 8.84 25.60 0.23 -29.22 16 15 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 16 C 0.01 0.56 5.30 84.65 0.45 1.01 16 17 N -0.92 -54.32 11.39 21.44 0.24 -54.07 16 18 Si 0.96 45.65 29.54 68.60 2.03 47.68 16 19 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 22 S 0.10 3.13 23.18 -56.49 -1.31 1.82 16 23 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 26 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.19 5.09 8.06 -2.91 -0.02 5.07 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.93 8.03 -2.39 -0.02 1.91 16 32 H 0.34 13.59 8.01 -89.69 -0.72 12.87 16 33 H 0.06 3.14 6.25 -2.39 -0.01 3.13 16 34 H 0.03 1.30 7.48 -2.39 -0.02 1.28 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -66.94 312.71 1.15 -65.78 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.34 Total: 16.70 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 4.72 Total: -24.85 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -4.63 Total: -107.14 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.31 Total: 1.82 kcal Total: -66.94 1.15 -65.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125165532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.775 kcal (2) G-P(sol) polarization free energy of solvation -66.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds