Wall clock time and date at job start Mon Mar 30 2020 07:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.33638 * 126.03636 * 89.68699 * 3 2 1 5 5 N 1.31784 * 114.49622 * 179.79098 * 4 3 2 6 6 C 1.29029 * 117.12462 * 0.52058 * 5 4 3 7 7 C 1.50706 * 124.91752 * 179.68088 * 6 5 4 8 8 H 1.09000 * 109.46747 * 195.04208 * 7 6 5 9 9 C 1.52993 * 109.47236 * 75.04134 * 7 6 5 10 10 N 1.46898 * 109.46721 * 315.04193 * 7 6 5 11 11 C 1.46901 * 110.99912 * 205.00112 * 10 7 6 12 12 H 1.09001 * 109.47200 * 324.99873 * 11 10 7 13 13 C 1.53004 * 109.47182 * 84.99900 * 11 10 7 14 14 C 1.50697 * 109.47487 * 204.99876 * 11 10 7 15 15 H 1.08006 * 119.99989 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00098 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00572 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99622 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47524 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46817 * 120.00358 * 18 16 14 21 21 H 1.48507 * 109.46981 * 239.99727 * 18 16 14 22 22 S 1.70981 * 110.16760 * 359.71470 * 6 5 4 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 28 28 H 1.07994 * 122.75344 * 359.97438 * 4 3 2 29 29 H 1.08995 * 109.47289 * 180.02562 * 9 7 6 30 30 H 1.09000 * 109.47095 * 300.00235 * 9 7 6 31 31 H 1.08999 * 109.47365 * 60.00083 * 9 7 6 32 32 H 1.00903 * 111.00530 * 328.95084 * 10 7 6 33 33 H 1.08997 * 109.46991 * 60.00412 * 13 11 10 34 34 H 1.09002 * 109.47145 * 180.02562 * 13 11 10 35 35 H 1.08999 * 109.47164 * 299.99621 * 13 11 10 36 36 H 0.96996 * 120.00332 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2889 2.1641 1.0806 5 7 2.7248 3.3795 0.8170 6 6 2.8404 3.7063 -0.4258 7 6 3.3137 5.0473 -0.9247 8 1 3.0672 5.1494 -1.9815 9 6 4.8290 5.1536 -0.7419 10 7 2.6524 6.1146 -0.1622 11 6 2.5955 7.3595 -0.9399 12 1 3.4954 7.4493 -1.5483 13 6 1.3652 7.3369 -1.8493 14 6 2.5046 8.5347 -0.0010 15 1 2.4909 8.3731 1.0668 16 6 2.4399 9.8164 -0.5051 17 7 2.4570 10.0134 -1.8053 18 14 2.3279 11.2732 0.6589 19 1 2.3250 10.7868 2.0620 20 1 3.4946 12.1671 0.4467 21 1 1.0744 12.0239 0.3932 22 16 2.3779 2.3981 -1.4249 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.1531 1.7977 2.0874 29 1 5.1713 6.1236 -1.1023 30 1 5.0755 5.0514 0.3149 31 1 5.3197 4.3616 -1.3077 32 1 1.7304 5.8302 0.1330 33 1 0.4653 7.2472 -1.2409 34 1 1.3232 8.2605 -2.4267 35 1 1.4310 6.4870 -2.5285 36 1 2.4111 10.9151 -2.1598 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125165750.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:31 Heat of formation + Delta-G solvation = 31.143410 kcal Electronic energy + Delta-G solvation = -16502.179391 eV Core-core repulsion = 13919.690770 eV Total energy + Delta-G solvation = -2582.488621 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.65100 -36.63279 -34.40693 -32.98320 -30.67278 -28.37148 -27.00012 -25.48479 -25.06807 -23.04605 -21.81363 -20.08385 -18.58076 -17.97349 -16.39712 -15.35571 -14.89411 -14.71942 -14.55353 -14.26184 -13.78510 -13.53697 -12.99783 -12.60493 -12.44906 -11.87357 -11.83394 -11.74047 -11.50613 -11.41188 -11.15972 -10.94552 -10.91129 -10.63831 -10.47807 -10.09904 -9.90058 -9.27198 -9.10776 -8.98751 -8.61376 -8.34035 -7.24528 -5.96416 -3.98812 0.83696 1.44777 1.88645 3.03549 3.34328 3.41995 3.48499 4.35421 4.47158 4.69860 4.82501 5.06578 5.14457 5.30785 5.35664 5.39054 5.52162 5.61450 5.72178 5.84168 5.88762 5.96791 6.17695 6.34699 6.43166 6.67117 6.78584 6.83215 7.08610 7.33401 7.74313 7.90190 8.00647 8.27828 8.52921 8.61490 9.09243 9.66390 11.10895 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.038258 B = 0.004578 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.705583 B = 6114.454836 C = 6169.430770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.041 4.041 3 C -0.233 4.233 4 C 0.038 3.962 5 N -0.451 5.451 6 C 0.067 3.933 7 C 0.161 3.839 8 H 0.054 0.946 9 C -0.128 4.128 10 N -0.661 5.661 11 C 0.209 3.791 12 H 0.038 0.962 13 C -0.171 4.171 14 C -0.490 4.490 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.286 1.286 22 S 0.095 5.905 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.170 0.830 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.330 0.670 33 H 0.028 0.972 34 H 0.091 0.909 35 H 0.003 0.997 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 -18.487 0.185 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.081 4.081 3 C -0.355 4.355 4 C -0.114 4.114 5 N -0.164 5.164 6 C -0.211 4.211 7 C 0.047 3.953 8 H 0.071 0.929 9 C -0.188 4.188 10 N -0.292 5.292 11 C 0.101 3.899 12 H 0.056 0.944 13 C -0.230 4.230 14 C -0.529 4.529 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.213 1.213 22 S 0.351 5.649 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.187 0.813 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.148 0.852 33 H 0.047 0.953 34 H 0.109 0.891 35 H 0.022 0.978 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.556 -17.903 -0.277 17.913 hybrid contribution -0.963 0.328 0.720 1.247 sum -1.519 -17.574 0.443 17.645 Atomic orbital electron populations 1.21806 0.94373 1.01827 1.02632 1.19927 0.96020 0.89101 1.03073 1.25925 1.11875 1.02440 0.95214 1.21771 1.00866 0.88912 0.99814 1.66258 1.15172 1.16385 1.18554 1.27518 1.01606 1.01063 0.90961 1.20172 0.96255 0.83520 0.95371 0.92877 1.21753 0.92801 1.01596 1.02644 1.60940 1.24866 1.02355 1.41083 1.19307 0.93826 0.85551 0.91202 0.94446 1.22466 0.99597 1.01009 0.99937 1.21170 1.48573 0.89631 0.93546 0.91748 1.24939 0.95586 0.98885 0.95133 1.69886 1.51743 1.21201 1.11042 0.86450 0.77361 0.82375 0.81276 1.19696 1.21156 1.21276 1.83949 1.61324 1.07394 1.12223 0.92091 0.92476 0.92220 0.90001 0.90901 0.81301 0.91049 0.91512 0.93708 0.85209 0.95311 0.89069 0.97764 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.84 16 2 C -0.04 -0.36 6.47 -27.88 -0.18 -0.54 16 3 C -0.23 -2.84 5.85 -35.92 -0.21 -3.05 16 4 C 0.04 0.52 11.25 -19.18 -0.22 0.31 16 5 N -0.45 -7.76 10.50 -11.86 -0.12 -7.88 16 6 C 0.07 1.13 5.90 -13.45 -0.08 1.05 16 7 C 0.16 2.99 2.93 -68.87 -0.20 2.79 16 8 H 0.05 0.99 7.11 -51.93 -0.37 0.62 16 9 C -0.13 -2.25 9.38 37.15 0.35 -1.90 16 10 N -0.66 -14.53 6.00 -102.17 -0.61 -15.15 16 11 C 0.21 5.24 2.38 -68.86 -0.16 5.08 16 12 H 0.04 1.01 7.11 -51.93 -0.37 0.64 16 13 C -0.17 -4.12 8.92 37.16 0.33 -3.79 16 14 C -0.49 -13.67 8.84 -34.44 -0.30 -13.97 16 15 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 16 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 17 N -0.90 -25.65 11.32 55.43 0.63 -25.02 16 18 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 S 0.10 1.29 23.18 -107.50 -2.49 -1.20 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 29 H 0.07 1.32 7.43 -51.93 -0.39 0.94 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.33 7.28 8.09 -39.29 -0.32 6.96 16 33 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 35 H 0.00 0.07 7.43 -51.93 -0.39 -0.31 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 311.52 15.07 4.69 4.69 Total: -1.00 -29.27 311.52 -8.82 -38.09 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.49 Total: 3.22 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -0.40 Total: -13.43 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.11 Total: -48.05 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.49 Total: -1.20 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.27 -8.82 -38.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125165750.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.234 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds