Wall clock time and date at job start Mon Mar 30 2020 07:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.33638 * 126.03636 * 89.68699 * 3 2 1 5 5 N 1.31784 * 114.49622 * 179.79098 * 4 3 2 6 6 C 1.29029 * 117.12462 * 0.52058 * 5 4 3 7 7 C 1.50706 * 124.91752 * 179.68088 * 6 5 4 8 8 H 1.09000 * 109.46747 * 195.04208 * 7 6 5 9 9 C 1.52993 * 109.47236 * 75.04134 * 7 6 5 10 10 N 1.46898 * 109.46721 * 315.04193 * 7 6 5 11 11 C 1.46901 * 110.99912 * 205.00112 * 10 7 6 12 12 H 1.09001 * 109.47200 * 324.99873 * 11 10 7 13 13 C 1.53004 * 109.47182 * 84.99900 * 11 10 7 14 14 C 1.50697 * 109.47487 * 204.99876 * 11 10 7 15 15 H 1.08006 * 119.99989 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00098 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00572 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99622 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47524 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46817 * 120.00358 * 18 16 14 21 21 H 1.48507 * 109.46981 * 239.99727 * 18 16 14 22 22 S 1.70981 * 110.16760 * 359.71470 * 6 5 4 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 28 28 H 1.07994 * 122.75344 * 359.97438 * 4 3 2 29 29 H 1.08995 * 109.47289 * 180.02562 * 9 7 6 30 30 H 1.09000 * 109.47095 * 300.00235 * 9 7 6 31 31 H 1.08999 * 109.47365 * 60.00083 * 9 7 6 32 32 H 1.00903 * 111.00530 * 328.95084 * 10 7 6 33 33 H 1.08997 * 109.46991 * 60.00412 * 13 11 10 34 34 H 1.09002 * 109.47145 * 180.02562 * 13 11 10 35 35 H 1.08999 * 109.47164 * 299.99621 * 13 11 10 36 36 H 0.96996 * 120.00332 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2889 2.1641 1.0806 5 7 2.7248 3.3795 0.8170 6 6 2.8404 3.7063 -0.4258 7 6 3.3137 5.0473 -0.9247 8 1 3.0672 5.1494 -1.9815 9 6 4.8290 5.1536 -0.7419 10 7 2.6524 6.1146 -0.1622 11 6 2.5955 7.3595 -0.9399 12 1 3.4954 7.4493 -1.5483 13 6 1.3652 7.3369 -1.8493 14 6 2.5046 8.5347 -0.0010 15 1 2.4909 8.3731 1.0668 16 6 2.4399 9.8164 -0.5051 17 7 2.4570 10.0134 -1.8053 18 14 2.3279 11.2732 0.6589 19 1 2.3250 10.7868 2.0620 20 1 3.4946 12.1671 0.4467 21 1 1.0744 12.0239 0.3932 22 16 2.3779 2.3981 -1.4249 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.1531 1.7977 2.0874 29 1 5.1713 6.1236 -1.1023 30 1 5.0755 5.0514 0.3149 31 1 5.3197 4.3616 -1.3077 32 1 1.7304 5.8302 0.1330 33 1 0.4653 7.2472 -1.2409 34 1 1.3232 8.2605 -2.4267 35 1 1.4310 6.4870 -2.5285 36 1 2.4111 10.9151 -2.1598 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125165750.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:30 Heat of formation + Delta-G solvation = 12.712701 kcal Electronic energy + Delta-G solvation = -16502.978606 eV Core-core repulsion = 13919.690770 eV Total energy + Delta-G solvation = -2583.287837 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.81003 -38.27444 -35.56502 -34.61899 -32.44277 -29.41794 -28.77019 -27.25894 -26.55047 -24.01251 -23.12202 -21.85761 -19.87489 -19.14277 -18.28339 -16.86896 -16.58976 -16.01442 -15.88222 -15.37721 -14.92897 -14.66841 -14.50118 -14.33324 -13.66917 -13.56767 -13.14644 -13.04551 -12.82803 -12.79954 -12.61652 -12.52905 -12.37876 -12.27408 -12.08469 -11.82766 -11.72285 -11.03997 -10.47587 -10.45779 -10.18994 -9.70436 -9.00741 -8.09139 -6.19164 -0.27059 0.36438 0.78745 1.42113 1.44074 1.56737 1.91171 2.45305 3.17121 3.19446 3.57624 3.88393 3.97166 4.15052 4.33626 4.39439 4.41437 4.59202 4.69645 4.77711 4.81961 4.86563 4.91630 5.03613 5.11199 5.14076 5.23718 5.32792 5.36948 5.42364 5.69254 5.81742 6.26732 6.61396 6.72448 6.90451 6.93868 7.50258 8.96759 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.038258 B = 0.004578 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.705583 B = 6114.454836 C = 6169.430770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 C -0.210 4.210 4 C 0.014 3.986 5 N -0.478 5.478 6 C 0.030 3.970 7 C 0.161 3.839 8 H 0.052 0.948 9 C -0.122 4.122 10 N -0.667 5.667 11 C 0.216 3.784 12 H 0.014 0.986 13 C -0.157 4.157 14 C -0.512 4.512 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.921 5.921 18 Si 0.959 3.041 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 S 0.131 5.869 23 H 0.083 0.917 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.191 0.809 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.328 0.672 33 H 0.027 0.973 34 H 0.066 0.934 35 H 0.025 0.975 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.732 -20.469 0.416 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 C -0.332 4.332 4 C -0.137 4.137 5 N -0.192 5.192 6 C -0.247 4.247 7 C 0.048 3.952 8 H 0.070 0.930 9 C -0.181 4.181 10 N -0.298 5.298 11 C 0.107 3.893 12 H 0.032 0.968 13 C -0.217 4.217 14 C -0.551 4.551 15 H 0.069 0.931 16 C -0.187 4.187 17 N -0.561 5.561 18 Si 0.785 3.215 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.205 1.205 22 S 0.386 5.614 23 H 0.102 0.898 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.208 0.792 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.145 0.855 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.058 -19.890 -0.049 19.919 hybrid contribution -0.823 0.784 0.635 1.302 sum -1.882 -19.106 0.586 19.208 Atomic orbital electron populations 1.21804 0.93724 1.03113 1.01868 1.20146 0.96384 0.86829 1.04863 1.26464 1.09090 1.03561 0.94038 1.22096 1.01926 0.88261 1.01369 1.66204 1.15444 1.18256 1.19270 1.27008 1.04382 1.01455 0.91892 1.20079 0.96344 0.83973 0.94831 0.93030 1.21677 0.92645 1.01592 1.02172 1.60779 1.24822 1.02650 1.41527 1.19047 0.93006 0.86475 0.90767 0.96845 1.22266 0.99104 1.00573 0.99723 1.21414 1.49159 0.91203 0.93301 0.93149 1.25656 0.95142 1.01263 0.96604 1.69995 1.51947 1.21839 1.12324 0.85492 0.77576 0.79198 0.79234 1.19689 1.20578 1.20544 1.83750 1.60160 1.05743 1.11721 0.89843 0.93475 0.92788 0.87813 0.89486 0.79208 0.92902 0.92706 0.90826 0.85455 0.95350 0.91552 0.95587 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.89 71.98 0.71 -1.20 16 2 C -0.04 -0.58 6.47 29.85 0.19 -0.39 16 3 C -0.21 -4.57 5.85 24.64 0.14 -4.43 16 4 C 0.01 0.36 11.25 83.66 0.94 1.30 16 5 N -0.48 -16.16 10.50 -191.44 -2.01 -18.17 16 6 C 0.03 1.00 5.90 88.52 0.52 1.52 16 7 C 0.16 6.05 2.93 44.17 0.13 6.18 16 8 H 0.05 1.93 7.11 -2.39 -0.02 1.92 16 9 C -0.12 -4.31 9.38 71.98 0.68 -3.63 16 10 N -0.67 -30.02 6.00 -477.16 -2.86 -32.89 16 11 C 0.22 11.11 2.38 44.17 0.11 11.22 16 12 H 0.01 0.76 7.11 -2.39 -0.02 0.74 16 13 C -0.16 -7.68 8.92 71.98 0.64 -7.04 16 14 C -0.51 -29.20 8.84 25.60 0.23 -28.97 16 15 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 16 C 0.01 0.65 5.30 84.65 0.45 1.10 16 17 N -0.92 -53.23 11.32 21.45 0.24 -52.99 16 18 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 S 0.13 3.29 23.18 -56.49 -1.31 1.98 16 23 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.19 3.90 8.06 -2.91 -0.02 3.88 16 29 H 0.05 2.02 7.43 -2.39 -0.02 2.01 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.33 14.77 8.09 -89.69 -0.73 14.05 16 33 H 0.03 1.33 8.13 -2.39 -0.02 1.31 16 34 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 35 H 0.03 1.11 7.43 -2.39 -0.02 1.09 16 36 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -63.33 311.52 1.16 -62.17 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.34 Total: 17.34 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 4.74 Total: -24.35 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -4.63 Total: -104.05 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.31 Total: 1.98 kcal Total: -63.33 1.16 -62.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125165750.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.884 kcal (2) G-P(sol) polarization free energy of solvation -63.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds